Wall clock time and date at job start Tue Mar 31 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86790 * 120.00050 * 2 1 4 4 H 1.48504 * 109.46977 * 90.00099 * 3 2 1 5 5 H 1.48502 * 109.47084 * 209.99919 * 3 2 1 6 6 H 1.48497 * 109.47583 * 330.00288 * 3 2 1 7 7 C 1.37880 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99566 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00395 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47121 * 175.32985 * 9 7 2 11 11 C 1.47899 * 110.99891 * 64.09835 * 10 9 7 12 12 C 1.53999 * 107.05813 * 214.15341 * 11 10 9 13 13 C 1.54591 * 105.13868 * 1.22454 * 12 11 10 14 14 C 1.48534 * 111.00224 * 306.70006 * 10 9 7 15 15 H 1.09006 * 110.66717 * 41.28477 * 14 10 9 16 16 C 1.50700 * 110.66713 * 278.15470 * 14 10 9 17 17 C 1.38233 * 119.96833 * 339.72913 * 16 14 10 18 18 C 1.38209 * 120.11839 * 179.73270 * 17 16 14 19 19 C 1.38244 * 120.10612 * 0.61473 * 18 17 16 20 20 C 1.38656 * 120.06525 * 359.70500 * 19 18 17 21 21 C 1.38660 * 119.96272 * 159.99834 * 16 14 10 22 22 O 1.36100 * 119.40825 * 359.63966 * 21 16 14 23 23 C 1.43172 * 116.71487 * 162.98003 * 22 21 16 24 24 C 1.53466 * 108.26395 * 46.17188 * 23 22 21 25 25 O 1.36114 * 119.39762 * 179.83901 * 20 19 18 26 26 H 0.97000 * 120.00111 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46955 * 295.33681 * 9 7 2 28 28 H 1.09004 * 109.46455 * 55.33454 * 9 7 2 29 29 H 1.09005 * 109.91642 * 333.50729 * 11 10 9 30 30 H 1.08997 * 109.92041 * 94.79867 * 11 10 9 31 31 H 1.09006 * 110.30253 * 120.14149 * 12 11 10 32 32 H 1.08994 * 110.30973 * 242.20703 * 12 11 10 33 33 H 1.09005 * 110.72022 * 140.31333 * 13 12 11 34 34 H 1.08992 * 110.72341 * 263.42069 * 13 12 11 35 35 H 1.08002 * 119.94062 * 0.02562 * 17 16 14 36 36 H 1.07996 * 119.94917 * 180.33046 * 18 17 16 37 37 H 1.08000 * 119.96764 * 179.68173 * 19 18 17 38 38 H 1.09004 * 109.69756 * 286.48343 * 23 22 21 39 39 H 1.08996 * 109.71009 * 165.86991 * 23 22 21 40 40 H 1.08999 * 109.71484 * 180.58533 * 24 23 22 41 41 H 1.09003 * 109.71310 * 59.95550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2016 -3.6134 -0.1139 11 6 3.0904 -3.6740 1.0666 12 6 4.4641 -4.1649 0.5731 13 6 4.3036 -4.3454 -0.9539 14 6 3.0963 -3.4328 -1.2857 15 1 3.4122 -2.3930 -1.3718 16 6 2.4157 -3.8899 -2.5501 17 6 1.3406 -4.7561 -2.4812 18 6 0.7105 -5.1730 -3.6385 19 6 1.1615 -4.7351 -4.8698 20 6 2.2435 -3.8714 -4.9463 21 6 2.8720 -3.4456 -3.7818 22 8 3.9304 -2.5915 -3.8339 23 6 4.5912 -2.4618 -5.0974 24 6 3.5212 -2.2943 -6.1847 25 8 2.6782 -3.4514 -6.1659 26 1 -0.4850 -0.8400 -0.0004 27 1 0.6889 -2.5942 0.9285 28 1 0.5628 -2.5213 -0.8456 29 1 3.1875 -2.6828 1.5096 30 1 2.6876 -4.3732 1.7993 31 1 5.2312 -3.4206 0.7876 32 1 4.7177 -5.1149 1.0433 33 1 5.1977 -4.0080 -1.4782 34 1 4.0838 -5.3845 -1.1984 35 1 0.9893 -5.1039 -1.5210 36 1 -0.1325 -5.8455 -3.5812 37 1 0.6707 -5.0663 -5.7731 38 1 5.1812 -3.3563 -5.2970 39 1 5.2416 -1.5873 -5.0839 40 1 3.9993 -2.2036 -7.1601 41 1 2.9270 -1.4033 -5.9817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066900056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:26 Heat of formation + Delta-G solvation = -42.757133 kcal Electronic energy + Delta-G solvation = -24131.956643 eV Core-core repulsion = 20784.258073 eV Total energy + Delta-G solvation = -3347.698571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01179 -38.71502 -37.05104 -36.82075 -33.33255 -31.19681 -31.02504 -30.65631 -28.10722 -27.20441 -25.57829 -24.49581 -23.16622 -22.08768 -20.81933 -20.13831 -19.52071 -18.23330 -17.10585 -17.06104 -16.35357 -15.41247 -15.15063 -14.91622 -14.54726 -14.29333 -14.04342 -13.84607 -13.72711 -13.27087 -12.98560 -12.88401 -12.72823 -11.89492 -11.75495 -11.45105 -11.26460 -11.14527 -10.92523 -10.83775 -10.73579 -10.66038 -10.36101 -10.25291 -10.13660 -10.04343 -9.87656 -9.12665 -8.34954 -8.00794 -7.72236 -7.20748 -6.36131 -4.08434 1.68090 1.72159 3.24510 3.40266 3.44048 3.46377 3.59323 4.09367 4.35619 4.52127 4.75342 4.87178 4.95122 5.12301 5.26913 5.29040 5.35373 5.40238 5.45823 5.51541 5.55046 5.70763 5.76179 5.92521 6.08647 6.14309 6.21965 6.33948 6.35924 6.55749 6.62363 6.64367 6.76735 6.86346 6.92290 7.06607 7.10075 7.25229 7.29103 7.72098 7.87747 8.03921 8.13710 8.52811 8.82402 9.63753 11.01462 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.006822 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.007563 B = 4103.275834 C = 4751.717806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 1.065 2.935 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.624 4.624 8 H 0.053 0.947 9 C 0.166 3.834 10 N -0.513 5.513 11 C 0.039 3.961 12 C -0.127 4.127 13 C -0.111 4.111 14 C 0.111 3.889 15 H 0.090 0.910 16 C -0.041 4.041 17 C -0.090 4.090 18 C -0.124 4.124 19 C -0.126 4.126 20 C 0.039 3.961 21 C 0.053 3.947 22 O -0.297 6.297 23 C 0.021 3.979 24 C 0.021 3.979 25 O -0.313 6.313 26 H 0.270 0.730 27 H 0.018 0.982 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 -8.532 -9.204 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.183 4.183 3 Si 0.893 3.107 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.663 4.663 8 H 0.071 0.929 9 C 0.040 3.960 10 N -0.236 5.236 11 C -0.089 4.089 12 C -0.165 4.165 13 C -0.149 4.149 14 C 0.002 3.998 15 H 0.108 0.892 16 C -0.042 4.042 17 C -0.109 4.109 18 C -0.142 4.142 19 C -0.145 4.145 20 C -0.005 4.005 21 C 0.008 3.992 22 O -0.211 6.211 23 C -0.055 4.055 24 C -0.055 4.055 25 O -0.228 6.228 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.840 -7.319 -9.265 14.173 hybrid contribution 0.723 -0.576 -0.109 0.931 sum 8.563 -7.896 -9.375 14.952 Atomic orbital electron populations 1.70750 1.06855 1.30699 1.46154 1.25705 0.96471 1.02496 0.93595 0.83606 0.74831 0.75510 0.76723 1.21470 1.21537 1.20979 1.22497 0.94495 0.92985 1.56302 0.92907 1.19935 0.92152 0.87480 0.96445 1.64900 1.14350 1.43613 1.00786 1.22696 0.91255 1.00705 0.94287 1.22367 0.97925 1.00436 0.95800 1.22432 0.97400 0.99553 0.95503 1.21448 0.90835 0.99369 0.88133 0.89212 1.19161 0.97088 0.96233 0.91740 1.20996 0.94529 0.96313 0.99026 1.20904 1.00446 1.01329 0.91511 1.20286 0.95307 1.00283 0.98613 1.18758 0.97137 1.01231 0.83395 1.18708 0.90943 0.96221 0.93305 1.86397 1.42555 1.60232 1.31947 1.23547 0.94631 1.03842 0.83507 1.23572 0.92645 0.88199 1.01111 1.86247 1.65291 1.44955 1.26275 0.91967 0.96375 0.95669 0.92127 0.92086 0.92182 0.92086 0.91978 0.91729 0.83947 0.85590 0.85608 0.90999 0.86505 0.86604 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.74 13.65 55.43 0.76 -26.98 16 2 C 0.02 0.65 5.46 -17.81 -0.10 0.55 16 3 Si 1.06 25.61 29.90 -169.99 -5.08 20.52 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.62 -17.36 6.92 -34.44 -0.24 -17.60 16 8 H 0.05 1.48 6.04 -52.49 -0.32 1.16 16 9 C 0.17 4.29 4.40 -4.98 -0.02 4.27 16 10 N -0.51 -11.09 3.93 -225.41 -0.89 -11.97 16 11 C 0.04 0.76 6.35 -2.75 -0.02 0.75 16 12 C -0.13 -2.09 6.93 -25.37 -0.18 -2.26 16 13 C -0.11 -1.90 6.48 -24.87 -0.16 -2.06 16 14 C 0.11 2.28 1.93 -66.94 -0.13 2.15 16 15 H 0.09 2.18 5.49 -51.93 -0.29 1.89 16 16 C -0.04 -0.81 4.94 -104.47 -0.52 -1.33 16 17 C -0.09 -1.64 9.20 -39.59 -0.36 -2.01 16 18 C -0.12 -1.94 10.04 -39.59 -0.40 -2.34 16 19 C -0.13 -2.00 9.96 -39.42 -0.39 -2.39 16 20 C 0.04 0.68 6.49 -39.14 -0.25 0.42 16 21 C 0.05 1.01 6.47 -39.14 -0.25 0.76 16 22 O -0.30 -5.32 9.57 -32.83 -0.31 -5.63 16 23 C 0.02 0.26 7.26 37.40 0.27 0.53 16 24 C 0.02 0.25 7.26 37.40 0.27 0.52 16 25 O -0.31 -4.83 10.42 -32.87 -0.34 -5.18 16 26 H 0.27 8.23 7.19 -40.82 -0.29 7.93 16 27 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.03 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.06 1.33 6.52 -51.93 -0.34 0.99 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 35 H 0.14 2.60 7.19 -52.49 -0.38 2.22 16 36 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -32.00 326.43 -9.30 -41.30 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.87 Total: 3.05 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -2.48 Total: -20.04 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.13 Total: -38.95 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.66 Total: -10.81 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.00 -9.30 -41.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066900056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.458 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds