Wall clock time and date at job start Tue Mar 31 2020 07:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86790 * 120.00050 * 2 1 4 4 H 1.48504 * 109.46977 * 90.00099 * 3 2 1 5 5 H 1.48502 * 109.47084 * 209.99919 * 3 2 1 6 6 H 1.48497 * 109.47583 * 330.00288 * 3 2 1 7 7 C 1.37880 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99566 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00395 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47121 * 175.32985 * 9 7 2 11 11 C 1.47899 * 110.99891 * 64.09835 * 10 9 7 12 12 C 1.53999 * 107.05813 * 214.15341 * 11 10 9 13 13 C 1.54591 * 105.13868 * 1.22454 * 12 11 10 14 14 C 1.48534 * 111.00224 * 306.70006 * 10 9 7 15 15 H 1.09006 * 110.66717 * 41.28477 * 14 10 9 16 16 C 1.50700 * 110.66713 * 278.15470 * 14 10 9 17 17 C 1.38233 * 119.96833 * 339.72913 * 16 14 10 18 18 C 1.38209 * 120.11839 * 179.73270 * 17 16 14 19 19 C 1.38244 * 120.10612 * 0.61473 * 18 17 16 20 20 C 1.38656 * 120.06525 * 359.70500 * 19 18 17 21 21 C 1.38660 * 119.96272 * 159.99834 * 16 14 10 22 22 O 1.36100 * 119.40825 * 359.63966 * 21 16 14 23 23 C 1.43172 * 116.71487 * 162.98003 * 22 21 16 24 24 C 1.53466 * 108.26395 * 46.17188 * 23 22 21 25 25 O 1.36114 * 119.39762 * 179.83901 * 20 19 18 26 26 H 0.97000 * 120.00111 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46955 * 295.33681 * 9 7 2 28 28 H 1.09004 * 109.46455 * 55.33454 * 9 7 2 29 29 H 1.09005 * 109.91642 * 333.50729 * 11 10 9 30 30 H 1.08997 * 109.92041 * 94.79867 * 11 10 9 31 31 H 1.09006 * 110.30253 * 120.14149 * 12 11 10 32 32 H 1.08994 * 110.30973 * 242.20703 * 12 11 10 33 33 H 1.09005 * 110.72022 * 140.31333 * 13 12 11 34 34 H 1.08992 * 110.72341 * 263.42069 * 13 12 11 35 35 H 1.08002 * 119.94062 * 0.02562 * 17 16 14 36 36 H 1.07996 * 119.94917 * 180.33046 * 18 17 16 37 37 H 1.08000 * 119.96764 * 179.68173 * 19 18 17 38 38 H 1.09004 * 109.69756 * 286.48343 * 23 22 21 39 39 H 1.08996 * 109.71009 * 165.86991 * 23 22 21 40 40 H 1.08999 * 109.71484 * 180.58533 * 24 23 22 41 41 H 1.09003 * 109.71310 * 59.95550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2016 -3.6134 -0.1139 11 6 3.0904 -3.6740 1.0666 12 6 4.4641 -4.1649 0.5731 13 6 4.3036 -4.3454 -0.9539 14 6 3.0963 -3.4328 -1.2857 15 1 3.4122 -2.3930 -1.3718 16 6 2.4157 -3.8899 -2.5501 17 6 1.3406 -4.7561 -2.4812 18 6 0.7105 -5.1730 -3.6385 19 6 1.1615 -4.7351 -4.8698 20 6 2.2435 -3.8714 -4.9463 21 6 2.8720 -3.4456 -3.7818 22 8 3.9304 -2.5915 -3.8339 23 6 4.5912 -2.4618 -5.0974 24 6 3.5212 -2.2943 -6.1847 25 8 2.6782 -3.4514 -6.1659 26 1 -0.4850 -0.8400 -0.0004 27 1 0.6889 -2.5942 0.9285 28 1 0.5628 -2.5213 -0.8456 29 1 3.1875 -2.6828 1.5096 30 1 2.6876 -4.3732 1.7993 31 1 5.2312 -3.4206 0.7876 32 1 4.7177 -5.1149 1.0433 33 1 5.1977 -4.0080 -1.4782 34 1 4.0838 -5.3845 -1.1984 35 1 0.9893 -5.1039 -1.5210 36 1 -0.1325 -5.8455 -3.5812 37 1 0.6707 -5.0663 -5.7731 38 1 5.1812 -3.3563 -5.2970 39 1 5.2416 -1.5873 -5.0839 40 1 3.9993 -2.2036 -7.1601 41 1 2.9270 -1.4033 -5.9817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066900056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:25 Heat of formation + Delta-G solvation = -62.808904 kcal Electronic energy + Delta-G solvation = -24132.826153 eV Core-core repulsion = 20784.258073 eV Total energy + Delta-G solvation = -3348.568081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24106 -40.25327 -38.32755 -38.11377 -35.42192 -32.59125 -32.53602 -32.04632 -29.31401 -28.65728 -27.61321 -25.64022 -25.05635 -23.64255 -22.06327 -21.57404 -21.10326 -19.58498 -18.77268 -18.33952 -17.90429 -17.00470 -16.38267 -16.20079 -15.94521 -15.67193 -15.50310 -15.36692 -15.15399 -14.97863 -14.54598 -14.32229 -14.08267 -13.65746 -13.27430 -12.94183 -12.77847 -12.69718 -12.37901 -12.36134 -12.22417 -12.04879 -12.01063 -11.96997 -11.83792 -11.44409 -11.23553 -11.18319 -10.58098 -9.36817 -9.09398 -9.01286 -8.65156 -6.40244 0.35065 0.40092 1.43801 1.52925 1.69936 2.10927 2.35376 2.49981 2.76545 3.12192 3.19145 3.41773 3.71821 3.87152 3.89287 3.94087 4.06976 4.16806 4.23309 4.34496 4.38443 4.46408 4.55512 4.57540 4.70481 4.71935 4.85221 4.92699 4.96142 5.03769 5.05016 5.07395 5.22030 5.25538 5.33327 5.43098 5.60908 5.77879 5.82597 5.92936 6.01571 6.27539 6.41800 6.48048 6.50098 7.40108 8.69150 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.006822 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.007563 B = 4103.275834 C = 4751.717806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.031 4.031 3 Si 1.110 2.890 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.621 4.621 8 H 0.049 0.951 9 C 0.183 3.817 10 N -0.508 5.508 11 C 0.033 3.967 12 C -0.117 4.117 13 C -0.101 4.101 14 C 0.114 3.886 15 H 0.047 0.953 16 C -0.072 4.072 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.126 4.126 20 C 0.032 3.968 21 C 0.037 3.963 22 O -0.326 6.326 23 C 0.012 3.988 24 C 0.016 3.984 25 O -0.318 6.318 26 H 0.256 0.744 27 H -0.002 1.002 28 H -0.002 1.002 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.994 -9.239 -10.550 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.230 4.230 3 Si 0.932 3.068 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.659 4.659 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.231 5.231 11 C -0.095 4.095 12 C -0.155 4.155 13 C -0.139 4.139 14 C 0.005 3.995 15 H 0.065 0.935 16 C -0.073 4.073 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.144 4.144 20 C -0.013 4.013 21 C -0.008 4.008 22 O -0.241 6.241 23 C -0.062 4.062 24 C -0.059 4.059 25 O -0.233 6.233 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.104 0.896 39 H 0.162 0.838 40 H 0.179 0.821 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.533 -8.050 -10.613 16.380 hybrid contribution 0.230 -0.389 0.229 0.506 sum 9.763 -8.439 -10.384 16.564 Atomic orbital electron populations 1.70878 1.07805 1.29859 1.48574 1.27171 0.96569 1.06371 0.92877 0.83024 0.74177 0.71744 0.77846 1.19549 1.19999 1.20802 1.22722 0.94383 0.93919 1.54923 0.93323 1.19561 0.92423 0.88460 0.94022 1.64876 1.14822 1.41078 1.02333 1.22799 0.93160 0.99740 0.93813 1.22344 0.95754 1.02157 0.95223 1.22396 0.96157 0.99352 0.96044 1.21321 0.91990 0.97888 0.88272 0.93474 1.19265 0.98351 0.97868 0.91825 1.21040 0.94773 0.96933 0.99734 1.21232 1.00667 1.00986 0.90619 1.20689 0.94735 0.99327 0.99681 1.18991 0.97361 1.01297 0.83647 1.18830 0.91733 0.96692 0.93554 1.86337 1.42594 1.60123 1.35053 1.23946 0.94796 1.05826 0.81656 1.23894 0.92069 0.86607 1.03317 1.86236 1.65809 1.46043 1.25188 0.93466 0.98425 0.98424 0.95036 0.90512 0.91538 0.88763 0.90892 0.90525 0.84826 0.82367 0.82795 0.89555 0.83763 0.82131 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.86 13.65 21.45 0.29 -58.56 16 2 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 3 Si 1.11 51.97 29.90 68.60 2.05 54.02 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.62 -35.79 6.92 25.60 0.18 -35.61 16 8 H 0.05 2.81 6.04 -2.91 -0.02 2.79 16 9 C 0.18 9.91 4.40 85.56 0.38 10.29 16 10 N -0.51 -22.61 3.93 -867.08 -3.41 -26.02 16 11 C 0.03 1.30 6.35 86.45 0.55 1.85 16 12 C -0.12 -3.64 6.93 31.47 0.22 -3.42 16 13 C -0.10 -3.37 6.48 31.80 0.21 -3.17 16 14 C 0.11 4.80 1.93 44.52 0.09 4.89 16 15 H 0.05 2.39 5.49 -2.38 -0.01 2.37 16 16 C -0.07 -2.90 4.94 -19.76 -0.10 -3.00 16 17 C -0.11 -3.91 9.20 22.26 0.20 -3.71 16 18 C -0.12 -3.55 10.04 22.26 0.22 -3.32 16 19 C -0.13 -3.78 9.96 22.37 0.22 -3.56 16 20 C 0.03 1.07 6.49 22.56 0.15 1.22 16 21 C 0.04 1.42 6.47 22.56 0.15 1.56 16 22 O -0.33 -11.68 9.57 -82.48 -0.79 -12.47 16 23 C 0.01 0.29 7.26 72.14 0.52 0.81 16 24 C 0.02 0.35 7.26 72.14 0.52 0.87 16 25 O -0.32 -9.24 10.42 -82.63 -0.86 -10.10 16 26 H 0.26 16.39 7.19 -92.71 -0.67 15.72 16 27 H 0.00 -0.13 8.13 -2.39 -0.02 -0.15 16 28 H 0.00 -0.14 7.66 -2.38 -0.02 -0.16 16 29 H 0.03 1.41 6.52 -2.38 -0.02 1.39 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.08 2.37 8.05 -2.39 -0.02 2.35 16 35 H 0.13 5.02 7.19 -2.91 -0.02 4.99 16 36 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -72.51 326.43 2.38 -70.13 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.13 Total: 18.66 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 3.97 Total: -35.66 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.12 Total: -84.59 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.65 Total: -22.56 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.05 Total: 54.02 kcal Total: -72.51 2.38 -70.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066900056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.322 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds