Wall clock time and date at job start Tue Mar 31 2020 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48501 * 109.47211 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.46920 * 30.00034 * 3 2 1 6 6 H 1.48494 * 109.47196 * 150.00192 * 3 2 1 7 7 C 1.37875 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99681 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00223 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.47436 * 110.99980 * 49.16411 * 10 9 7 12 12 C 1.54314 * 107.23541 * 123.25579 * 11 10 9 13 13 C 1.55139 * 103.02272 * 22.27935 * 12 11 10 14 14 C 1.47851 * 110.99446 * 170.00299 * 10 9 7 15 15 H 1.08999 * 110.37237 * 332.57585 * 14 10 9 16 16 C 1.50697 * 110.37258 * 94.80896 * 14 10 9 17 17 C 1.38238 * 119.96977 * 24.99561 * 16 14 10 18 18 C 1.38210 * 120.11753 * 180.02562 * 17 16 14 19 19 C 1.38246 * 120.11148 * 0.06598 * 18 17 16 20 20 C 1.38651 * 120.06254 * 0.23246 * 19 18 17 21 21 C 1.38669 * 119.96785 * 204.97641 * 16 14 10 22 22 O 1.36099 * 119.40335 * 359.62931 * 21 16 14 23 23 C 1.43482 * 116.57797 * 162.16235 * 22 21 16 24 24 C 1.53466 * 107.99396 * 46.76951 * 23 22 21 25 25 O 1.36113 * 119.40072 * 179.47289 * 20 19 18 26 26 H 0.97007 * 120.00117 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46795 * 60.00453 * 9 7 2 28 28 H 1.08997 * 109.47074 * 300.00297 * 9 7 2 29 29 H 1.09007 * 109.88332 * 242.66013 * 11 10 9 30 30 H 1.09001 * 109.89217 * 3.84275 * 11 10 9 31 31 H 1.09001 * 110.71013 * 140.66099 * 12 11 10 32 32 H 1.08996 * 110.70402 * 263.72447 * 12 11 10 33 33 H 1.08997 * 110.99759 * 206.25846 * 13 12 11 34 34 H 1.09001 * 110.99039 * 82.43624 * 13 12 11 35 35 H 1.08001 * 119.94204 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.94665 * 180.09130 * 18 17 16 37 37 H 1.08002 * 119.96548 * 179.97438 * 19 18 17 38 38 H 1.08997 * 110.13541 * 286.98687 * 23 22 21 39 39 H 1.09000 * 109.57250 * 166.22695 * 23 22 21 40 40 H 1.09000 * 109.71193 * 180.23547 * 24 23 22 41 41 H 1.09000 * 109.71031 * 59.60664 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 3.3282 -3.3774 -1.0420 12 6 4.4285 -3.9626 -1.9520 13 6 5.6864 -3.9303 -1.0446 14 6 5.4592 -2.6255 -0.2412 15 1 5.7757 -1.7597 -0.8229 16 6 6.2050 -2.6784 1.0672 17 6 5.5866 -3.1860 2.1946 18 6 6.2675 -3.2355 3.3963 19 6 7.5691 -2.7762 3.4753 20 6 8.1931 -2.2601 2.3498 21 6 7.5111 -2.2182 1.1392 22 8 8.1097 -1.7285 0.0192 23 6 9.2783 -0.9198 0.2172 24 6 10.1906 -1.6421 1.2178 25 8 9.4711 -1.8017 2.4455 26 1 -0.4851 0.8401 0.0004 27 1 3.8751 -0.6805 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 2.7602 -4.1852 -0.5803 30 1 2.6637 -2.7407 -1.6260 31 1 4.1870 -4.9859 -2.2396 32 1 4.5706 -3.3391 -2.8346 33 1 6.5967 -3.8682 -1.6409 34 1 5.7132 -4.7964 -0.3832 35 1 4.5693 -3.5438 2.1364 36 1 5.7822 -3.6340 4.2749 37 1 8.0988 -2.8155 4.4157 38 1 8.9968 0.0555 0.6141 39 1 9.8001 -0.7938 -0.7314 40 1 11.0878 -1.0482 1.3922 41 1 10.4672 -2.6199 0.8235 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066900057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:29 Heat of formation + Delta-G solvation = -35.933205 kcal Electronic energy + Delta-G solvation = -23690.222545 eV Core-core repulsion = 20342.819882 eV Total energy + Delta-G solvation = -3347.402663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17252 -38.80906 -37.20136 -36.96529 -33.05898 -31.34514 -31.16775 -31.01192 -28.26528 -27.40480 -26.69262 -24.65656 -22.93366 -21.85668 -20.95685 -20.35200 -19.37578 -18.30397 -17.23392 -17.01214 -16.57068 -15.37484 -15.31508 -15.14427 -14.79964 -14.43534 -14.29820 -14.07701 -13.84433 -13.40835 -12.87983 -12.71631 -12.56537 -12.41124 -12.14262 -11.78639 -11.55714 -11.35175 -11.09292 -11.02721 -10.79867 -10.69925 -10.57333 -10.35668 -10.16191 -10.04619 -9.69783 -9.17621 -8.59700 -8.17367 -7.88838 -7.40399 -6.05959 -4.03011 1.51028 1.58432 3.08106 3.28212 3.28707 3.36577 3.41477 3.94163 4.18297 4.42876 4.57442 4.70210 4.77972 4.94862 5.10291 5.14675 5.24882 5.26279 5.33298 5.37040 5.45996 5.55537 5.63659 5.82772 5.87253 6.01850 6.10426 6.19323 6.25438 6.38319 6.43997 6.54778 6.70300 6.78589 6.85629 6.93511 6.93886 7.06198 7.13091 7.53535 7.58087 7.95970 8.06569 8.63104 9.00840 9.56379 11.06759 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.005391 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.809454 B = 5192.821094 C = 5608.417628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.158 3.842 10 N -0.514 5.514 11 C 0.052 3.948 12 C -0.144 4.144 13 C -0.113 4.113 14 C 0.112 3.888 15 H 0.061 0.939 16 C -0.053 4.053 17 C -0.080 4.080 18 C -0.121 4.121 19 C -0.123 4.123 20 C 0.039 3.961 21 C 0.047 3.953 22 O -0.303 6.303 23 C 0.019 3.981 24 C 0.023 3.977 25 O -0.312 6.312 26 H 0.263 0.737 27 H 0.029 0.971 28 H -0.017 1.017 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.413 -5.896 1.146 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.032 3.968 10 N -0.238 5.238 11 C -0.076 4.076 12 C -0.183 4.183 13 C -0.151 4.151 14 C 0.003 3.997 15 H 0.079 0.921 16 C -0.054 4.054 17 C -0.098 4.098 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.006 4.006 21 C 0.002 3.998 22 O -0.218 6.218 23 C -0.057 4.057 24 C -0.053 4.053 25 O -0.227 6.227 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.001 0.999 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.167 -5.939 1.602 20.129 hybrid contribution 0.809 1.621 -0.822 1.990 sum 19.976 -4.318 0.780 20.452 Atomic orbital electron populations 1.69892 1.06098 1.26845 1.50975 1.24875 0.94690 0.98798 0.94717 0.86901 0.80548 0.84142 0.78466 1.20393 1.21128 1.19083 1.21107 0.88722 0.94834 1.50535 0.89890 1.20339 0.96728 0.84724 0.95045 1.63340 1.00362 1.14261 1.45824 1.22714 0.95764 0.97323 0.91793 1.22863 0.96003 1.00962 0.98445 1.22642 0.97686 0.97137 0.97607 1.21251 0.89842 0.97509 0.91113 0.92133 1.19229 0.89401 0.99713 0.97069 1.21079 1.00793 0.97502 0.90443 1.20979 0.93563 1.01004 0.98412 1.20348 0.95821 1.01266 0.96769 1.18763 0.84676 1.02687 0.94447 1.18716 0.93143 1.02097 0.85846 1.86410 1.41765 1.65053 1.28556 1.23622 0.86302 0.94104 1.01677 1.23549 0.95057 1.01766 0.84937 1.86276 1.23126 1.82084 1.31178 0.92670 0.95330 0.99887 0.91605 0.90495 0.91478 0.92016 0.91609 0.91050 0.83334 0.85281 0.85478 0.90650 0.86466 0.86575 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.51 -14.48 8.47 -34.44 -0.29 -14.77 16 8 H 0.08 2.50 7.11 -52.48 -0.37 2.12 16 9 C 0.16 3.92 3.89 -4.98 -0.02 3.90 16 10 N -0.51 -10.79 3.75 -226.18 -0.85 -11.64 16 11 C 0.05 1.01 5.77 -2.84 -0.02 0.99 16 12 C -0.14 -2.25 6.94 -24.91 -0.17 -2.42 16 13 C -0.11 -1.74 6.48 -24.59 -0.16 -1.90 16 14 C 0.11 2.05 2.36 -67.33 -0.16 1.89 16 15 H 0.06 1.21 7.10 -51.93 -0.37 0.84 16 16 C -0.05 -0.93 5.10 -104.46 -0.53 -1.46 16 17 C -0.08 -1.33 9.34 -39.59 -0.37 -1.70 16 18 C -0.12 -1.73 10.04 -39.59 -0.40 -2.13 16 19 C -0.12 -1.75 9.96 -39.43 -0.39 -2.14 16 20 C 0.04 0.59 6.49 -39.14 -0.25 0.34 16 21 C 0.05 0.78 6.47 -39.13 -0.25 0.52 16 22 O -0.30 -4.60 9.50 -32.83 -0.31 -4.91 16 23 C 0.02 0.20 7.27 37.40 0.27 0.47 16 24 C 0.02 0.22 7.25 37.40 0.27 0.49 16 25 O -0.31 -4.24 10.42 -32.87 -0.34 -4.59 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 28 H -0.02 -0.42 7.25 -51.93 -0.38 -0.79 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.69 6.49 -51.93 -0.34 1.35 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.15 2.59 7.30 -52.49 -0.38 2.21 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 327.23 15.07 4.93 4.93 Total: -1.00 -32.05 327.23 -9.06 -41.11 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.02 Total: 0.50 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.57 Total: -15.95 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.08 Total: -38.34 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.65 Total: -9.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.05 -9.06 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066900057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.181 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds