Wall clock time and date at job start Tue Mar 31 2020 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48501 * 109.47211 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.46920 * 30.00034 * 3 2 1 6 6 H 1.48494 * 109.47196 * 150.00192 * 3 2 1 7 7 C 1.37875 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99681 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00223 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.47436 * 110.99980 * 49.16411 * 10 9 7 12 12 C 1.54314 * 107.23541 * 123.25579 * 11 10 9 13 13 C 1.55139 * 103.02272 * 22.27935 * 12 11 10 14 14 C 1.47851 * 110.99446 * 170.00299 * 10 9 7 15 15 H 1.08999 * 110.37237 * 332.57585 * 14 10 9 16 16 C 1.50697 * 110.37258 * 94.80896 * 14 10 9 17 17 C 1.38238 * 119.96977 * 24.99561 * 16 14 10 18 18 C 1.38210 * 120.11753 * 180.02562 * 17 16 14 19 19 C 1.38246 * 120.11148 * 0.06598 * 18 17 16 20 20 C 1.38651 * 120.06254 * 0.23246 * 19 18 17 21 21 C 1.38669 * 119.96785 * 204.97641 * 16 14 10 22 22 O 1.36099 * 119.40335 * 359.62931 * 21 16 14 23 23 C 1.43482 * 116.57797 * 162.16235 * 22 21 16 24 24 C 1.53466 * 107.99396 * 46.76951 * 23 22 21 25 25 O 1.36113 * 119.40072 * 179.47289 * 20 19 18 26 26 H 0.97007 * 120.00117 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46795 * 60.00453 * 9 7 2 28 28 H 1.08997 * 109.47074 * 300.00297 * 9 7 2 29 29 H 1.09007 * 109.88332 * 242.66013 * 11 10 9 30 30 H 1.09001 * 109.89217 * 3.84275 * 11 10 9 31 31 H 1.09001 * 110.71013 * 140.66099 * 12 11 10 32 32 H 1.08996 * 110.70402 * 263.72447 * 12 11 10 33 33 H 1.08997 * 110.99759 * 206.25846 * 13 12 11 34 34 H 1.09001 * 110.99039 * 82.43624 * 13 12 11 35 35 H 1.08001 * 119.94204 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.94665 * 180.09130 * 18 17 16 37 37 H 1.08002 * 119.96548 * 179.97438 * 19 18 17 38 38 H 1.08997 * 110.13541 * 286.98687 * 23 22 21 39 39 H 1.09000 * 109.57250 * 166.22695 * 23 22 21 40 40 H 1.09000 * 109.71193 * 180.23547 * 24 23 22 41 41 H 1.09000 * 109.71031 * 59.60664 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 3.3282 -3.3774 -1.0420 12 6 4.4285 -3.9626 -1.9520 13 6 5.6864 -3.9303 -1.0446 14 6 5.4592 -2.6255 -0.2412 15 1 5.7757 -1.7597 -0.8229 16 6 6.2050 -2.6784 1.0672 17 6 5.5866 -3.1860 2.1946 18 6 6.2675 -3.2355 3.3963 19 6 7.5691 -2.7762 3.4753 20 6 8.1931 -2.2601 2.3498 21 6 7.5111 -2.2182 1.1392 22 8 8.1097 -1.7285 0.0192 23 6 9.2783 -0.9198 0.2172 24 6 10.1906 -1.6421 1.2178 25 8 9.4711 -1.8017 2.4455 26 1 -0.4851 0.8401 0.0004 27 1 3.8751 -0.6805 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 2.7602 -4.1852 -0.5803 30 1 2.6637 -2.7407 -1.6260 31 1 4.1870 -4.9859 -2.2396 32 1 4.5706 -3.3391 -2.8346 33 1 6.5967 -3.8682 -1.6409 34 1 5.7132 -4.7964 -0.3832 35 1 4.5693 -3.5438 2.1364 36 1 5.7822 -3.6340 4.2749 37 1 8.0988 -2.8155 4.4157 38 1 8.9968 0.0555 0.6141 39 1 9.8001 -0.7938 -0.7314 40 1 11.0878 -1.0482 1.3922 41 1 10.4672 -2.6199 0.8235 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066900057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:29 Heat of formation + Delta-G solvation = -56.260454 kcal Electronic energy + Delta-G solvation = -23691.104001 eV Core-core repulsion = 20342.819882 eV Total energy + Delta-G solvation = -3348.284118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22807 -40.21301 -38.31081 -38.10764 -35.12478 -32.95097 -32.53669 -32.05923 -29.30445 -28.83192 -28.54946 -25.62188 -24.50132 -23.43829 -21.98342 -21.81089 -20.82385 -19.41017 -18.73948 -18.30111 -18.06619 -16.88896 -16.56368 -16.29015 -16.16727 -15.87432 -15.48016 -15.26509 -14.95199 -14.70468 -14.57272 -14.48571 -14.07339 -13.75519 -13.71193 -13.13771 -12.91670 -12.73690 -12.57883 -12.31280 -12.12359 -12.09953 -11.98558 -11.75370 -11.71085 -11.50575 -11.42904 -11.20389 -10.83367 -9.36415 -9.10759 -9.00472 -8.31734 -6.33666 0.34098 0.41792 1.27930 1.30675 1.41754 2.11840 2.30192 2.35147 2.75801 3.00924 3.14189 3.39916 3.68767 3.84524 3.89776 3.96263 4.08072 4.16161 4.23272 4.30139 4.40765 4.44353 4.49378 4.59610 4.68317 4.73409 4.76683 4.87181 4.96067 4.98499 5.06511 5.11191 5.21523 5.23668 5.36324 5.44629 5.48311 5.66935 5.80498 5.95592 6.06316 6.29593 6.47045 6.59106 6.72476 7.29613 8.84143 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.005391 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.809454 B = 5192.821094 C = 5608.417628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.050 0.950 9 C 0.174 3.826 10 N -0.521 5.521 11 C 0.049 3.951 12 C -0.132 4.132 13 C -0.101 4.101 14 C 0.113 3.887 15 H 0.043 0.957 16 C -0.076 4.076 17 C -0.099 4.099 18 C -0.116 4.116 19 C -0.123 4.123 20 C 0.035 3.965 21 C 0.038 3.962 22 O -0.322 6.322 23 C 0.010 3.990 24 C 0.019 3.981 25 O -0.321 6.321 26 H 0.267 0.733 27 H 0.016 0.984 28 H -0.021 1.021 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.070 0.930 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.562 -5.791 1.306 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.554 4.554 8 H 0.068 0.932 9 C 0.047 3.953 10 N -0.244 5.244 11 C -0.078 4.078 12 C -0.170 4.170 13 C -0.139 4.139 14 C 0.004 3.996 15 H 0.061 0.939 16 C -0.078 4.078 17 C -0.117 4.117 18 C -0.134 4.134 19 C -0.142 4.142 20 C -0.010 4.010 21 C -0.008 4.008 22 O -0.238 6.238 23 C -0.065 4.065 24 C -0.055 4.055 25 O -0.236 6.236 26 H 0.076 0.924 27 H 0.034 0.966 28 H -0.004 1.004 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.088 0.912 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.339 -5.846 1.754 23.158 hybrid contribution -0.115 1.542 -0.867 1.773 sum 22.224 -4.304 0.886 22.654 Atomic orbital electron populations 1.70020 1.07761 1.28035 1.52396 1.25699 0.95496 1.02574 0.94427 0.85868 0.79315 0.79655 0.79066 1.19236 1.20198 1.18509 1.21286 0.90559 0.93712 1.49844 0.93173 1.20004 0.94317 0.87014 0.93987 1.63265 1.02422 1.11954 1.46808 1.22675 0.96668 0.96600 0.91895 1.22796 0.94339 1.02318 0.97582 1.22604 0.98193 0.95771 0.97320 1.21258 0.87728 0.98343 0.92243 0.93942 1.19228 0.90327 1.01439 0.96769 1.21037 1.00391 0.98765 0.91526 1.21228 0.93687 1.00229 0.98291 1.20691 0.95700 1.00211 0.97548 1.18955 0.85535 1.02299 0.94242 1.18748 0.92985 1.02272 0.86759 1.86366 1.43356 1.65582 1.28459 1.23991 0.85283 0.93293 1.03942 1.23899 0.95421 1.02838 0.83374 1.86260 1.22295 1.81733 1.33343 0.92350 0.96592 1.00386 0.91707 0.93813 0.88628 0.91627 0.89708 0.90280 0.85032 0.82719 0.82963 0.91181 0.83062 0.82837 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 2 C 0.02 0.95 5.47 84.65 0.46 1.42 16 3 Si 0.94 45.74 27.47 68.60 1.88 47.62 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 7 C -0.52 -30.24 8.47 25.60 0.22 -30.03 16 8 H 0.05 3.20 7.11 -2.91 -0.02 3.17 16 9 C 0.17 8.88 3.89 85.56 0.33 9.21 16 10 N -0.52 -22.48 3.75 -869.52 -3.26 -25.74 16 11 C 0.05 1.97 5.77 86.65 0.50 2.47 16 12 C -0.13 -3.96 6.94 31.77 0.22 -3.74 16 13 C -0.10 -2.97 6.48 31.98 0.21 -2.77 16 14 C 0.11 4.15 2.36 44.64 0.11 4.26 16 15 H 0.04 1.71 7.10 -2.39 -0.02 1.69 16 16 C -0.08 -2.67 5.10 -19.76 -0.10 -2.77 16 17 C -0.10 -3.30 9.34 22.26 0.21 -3.09 16 18 C -0.12 -3.17 10.04 22.27 0.22 -2.95 16 19 C -0.12 -3.23 9.96 22.37 0.22 -3.01 16 20 C 0.03 1.00 6.49 22.56 0.15 1.14 16 21 C 0.04 1.21 6.47 22.56 0.15 1.35 16 22 O -0.32 -9.32 9.50 -82.47 -0.78 -10.11 16 23 C 0.01 0.18 7.27 72.14 0.52 0.71 16 24 C 0.02 0.31 7.25 72.14 0.52 0.83 16 25 O -0.32 -7.90 10.42 -82.62 -0.86 -8.76 16 26 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 27 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 28 H -0.02 -1.10 7.25 -2.39 -0.02 -1.12 16 29 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.04 2.01 6.49 -2.39 -0.02 2.00 16 31 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 35 H 0.13 4.75 7.30 -2.91 -0.02 4.73 16 36 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -71.61 327.23 2.18 -69.43 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.96 Total: 13.33 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.94 Total: -26.96 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.96 Total: -84.56 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.64 Total: -18.87 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -71.61 2.18 -69.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066900057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.165 kcal (2) G-P(sol) polarization free energy of solvation -71.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds