Wall clock time and date at job start Tue Mar 31 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99926 * 2 1 4 4 H 1.48501 * 109.46979 * 269.99537 * 3 2 1 5 5 H 1.48500 * 109.47050 * 29.99853 * 3 2 1 6 6 H 1.48502 * 109.47060 * 149.99704 * 3 2 1 7 7 C 1.37882 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00567 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99538 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46879 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.46978 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46929 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99764 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00158 * 354.88661 * 13 12 11 15 15 C 1.50699 * 119.99693 * 175.15780 * 13 12 11 16 16 H 1.09000 * 109.43851 * 335.28750 * 15 13 12 17 17 C 1.53075 * 109.43487 * 215.36823 * 15 13 12 18 18 C 1.53410 * 108.28825 * 191.74962 * 17 15 13 19 19 O 1.42828 * 108.37392 * 64.74874 * 18 17 15 20 20 C 1.35839 * 117.86137 * 310.84741 * 19 18 17 21 21 C 1.39145 * 118.50086 * 197.01694 * 20 19 18 22 22 C 1.37972 * 120.21718 * 180.18225 * 21 20 19 23 23 C 1.38290 * 119.95861 * 0.02562 * 22 21 20 24 24 C 1.38100 * 119.98090 * 359.92689 * 23 22 21 25 25 C 1.38319 * 121.79165 * 17.11788 * 20 19 18 26 26 H 0.96999 * 120.00199 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47283 * 60.00192 * 9 7 2 28 28 H 1.09000 * 109.47413 * 300.00163 * 9 7 2 29 29 H 1.08998 * 109.47224 * 60.00738 * 10 9 7 30 30 H 1.08994 * 109.47157 * 299.99924 * 10 9 7 31 31 H 1.08989 * 109.47007 * 59.99884 * 11 10 9 32 32 H 1.09002 * 109.46652 * 299.99446 * 11 10 9 33 33 H 0.96998 * 120.00046 * 0.02562 * 12 11 10 34 34 H 1.08998 * 109.70323 * 311.44739 * 17 15 13 35 35 H 1.08997 * 109.69801 * 72.05152 * 17 15 13 36 36 H 1.09002 * 109.67980 * 184.47285 * 18 17 15 37 37 H 1.09001 * 109.68642 * 304.98677 * 18 17 15 38 38 H 1.07996 * 119.89171 * 0.16446 * 21 20 19 39 39 H 1.07994 * 120.02027 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.00887 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.84031 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9832 -7.3713 0.0006 14 8 0.7947 -7.5943 0.0938 15 6 2.9582 -8.5152 -0.1089 16 1 3.8670 -8.1711 -0.6028 17 6 2.3289 -9.6441 -0.9290 18 6 3.2052 -10.8943 -0.7790 19 8 3.1651 -11.3111 0.5865 20 6 3.3856 -10.3725 1.5434 21 6 3.7065 -10.7976 2.8289 22 6 3.9339 -9.8747 3.8289 23 6 3.8426 -8.5224 3.5545 24 6 3.5253 -8.0969 2.2795 25 6 3.2971 -9.0193 1.2710 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.8541 -5.0446 -0.8902 32 1 0.8535 -5.0451 0.8897 33 1 3.3861 -5.9234 0.0016 34 1 1.3253 -9.8523 -0.5582 35 1 2.2805 -9.3530 -1.9783 36 1 2.8215 -11.6903 -1.4174 37 1 4.2314 -10.6595 -1.0619 38 1 3.7775 -11.8534 3.0446 39 1 4.1832 -10.2081 4.8254 40 1 4.0200 -7.7992 4.3368 41 1 3.4549 -7.0402 2.0676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:40 Heat of formation + Delta-G solvation = -71.299392 kcal Electronic energy + Delta-G solvation = -22266.067479 eV Core-core repulsion = 18917.131223 eV Total energy + Delta-G solvation = -3348.936256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24210 -39.28458 -37.70847 -35.54527 -34.40102 -33.32749 -31.29446 -30.81438 -30.42375 -27.46102 -26.01675 -24.05401 -23.25364 -22.56815 -20.93387 -20.56744 -19.67350 -18.15481 -17.05342 -16.93637 -16.44705 -16.30570 -15.57304 -15.19151 -15.12201 -14.50846 -14.41939 -14.12079 -13.86514 -13.80885 -13.46932 -13.20590 -12.69001 -12.31603 -12.15433 -11.88540 -11.78837 -11.71222 -11.26839 -11.12422 -10.93037 -10.85860 -10.77258 -10.62465 -9.96921 -9.90804 -9.43488 -9.15715 -8.98550 -8.84802 -8.39848 -8.37246 -6.04328 -4.07675 1.05763 1.22594 2.64521 3.00711 3.24409 3.28913 3.35516 3.38255 3.59994 4.24904 4.36972 4.41955 4.44217 4.66149 4.84590 4.88446 4.91783 5.00522 5.17987 5.24619 5.27848 5.31168 5.31500 5.59470 5.67706 5.72454 5.77444 5.86536 6.06039 6.11270 6.20890 6.33599 6.41661 6.54721 6.55313 6.77549 6.95877 7.19181 7.60292 7.61359 7.72530 7.94087 8.28750 8.35597 8.99005 9.56709 11.06940 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.002898 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.020093 B = 9659.220391 C =10281.701408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.725 5.725 13 C 0.520 3.480 14 O -0.534 6.534 15 C -0.064 4.064 16 H 0.101 0.899 17 C -0.148 4.148 18 C 0.064 3.936 19 O -0.316 6.316 20 C 0.140 3.860 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.149 4.149 24 C -0.081 4.081 25 C -0.150 4.150 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.398 0.602 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 -22.621 1.748 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.376 5.376 13 C 0.305 3.695 14 O -0.411 6.411 15 C -0.085 4.085 16 H 0.119 0.881 17 C -0.185 4.185 18 C -0.011 4.011 19 O -0.230 6.230 20 C 0.095 3.905 21 C -0.170 4.170 22 C -0.103 4.103 23 C -0.167 4.167 24 C -0.099 4.099 25 C -0.151 4.151 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.360 -22.838 1.810 24.748 hybrid contribution 0.880 1.409 -0.171 1.670 sum 10.240 -21.428 1.639 23.806 Atomic orbital electron populations 1.69962 1.06074 1.26732 1.50480 1.25032 0.94855 0.99323 0.95243 0.86581 0.79812 0.83416 0.78106 1.20652 1.21184 1.19871 1.21196 0.92983 0.90929 1.51040 0.92642 1.19028 0.93834 0.90848 0.97658 1.21892 0.99770 0.93304 1.00886 1.21683 0.91890 0.85076 1.02086 1.46324 1.10813 1.05842 1.74659 1.20172 0.89195 0.83714 0.76448 1.90703 1.16949 1.84546 1.48861 1.20182 0.99000 0.95138 0.94208 0.88112 1.22173 1.01271 0.93877 1.01223 1.22996 0.99959 0.97711 0.80414 1.85983 1.86490 1.35222 1.15282 1.18607 0.95722 0.86913 0.89239 1.20580 1.04936 1.00607 0.90857 1.20968 0.97901 0.92801 0.98613 1.21051 1.02874 0.96008 0.96759 1.21076 0.96860 0.99383 0.92590 1.19365 1.07492 0.92666 0.95572 0.92893 0.96308 0.96259 0.92701 0.92708 0.91735 0.91652 0.76770 0.88653 0.89237 0.87024 0.91588 0.85140 0.85291 0.85537 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.12 1.98 5.68 -4.03 -0.02 1.96 16 12 N -0.73 -10.01 4.83 -60.29 -0.29 -10.30 16 13 C 0.52 7.58 5.80 -10.99 -0.06 7.52 16 14 O -0.53 -10.05 16.07 5.56 0.09 -9.97 16 15 C -0.06 -0.71 2.70 -92.85 -0.25 -0.96 16 16 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 17 C -0.15 -1.46 5.35 -26.48 -0.14 -1.61 16 18 C 0.06 0.52 7.03 37.37 0.26 0.78 16 19 O -0.32 -3.50 10.27 -19.24 -0.20 -3.69 16 20 C 0.14 1.65 6.47 -39.22 -0.25 1.40 16 21 C -0.15 -1.57 9.94 -39.34 -0.39 -1.96 16 22 C -0.08 -0.80 10.04 -39.66 -0.40 -1.20 16 23 C -0.15 -1.55 10.04 -39.61 -0.40 -1.94 16 24 C -0.08 -0.95 9.10 -39.51 -0.36 -1.31 16 25 C -0.15 -1.79 5.42 -104.44 -0.57 -2.35 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.40 4.36 8.41 -40.82 -0.34 4.02 16 34 H 0.09 1.18 7.46 -51.93 -0.39 0.80 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.13 1.45 6.74 -52.48 -0.35 1.10 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -33.36 341.94 -8.93 -42.29 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.12 Total: 1.09 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -3.27 Total: -14.93 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.44 Total: -36.27 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.11 Total: -13.66 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.36 -8.93 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.010 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds