Wall clock time and date at job start Tue Mar 31 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99926 * 2 1 4 4 H 1.48501 * 109.46979 * 269.99537 * 3 2 1 5 5 H 1.48500 * 109.47050 * 29.99853 * 3 2 1 6 6 H 1.48502 * 109.47060 * 149.99704 * 3 2 1 7 7 C 1.37882 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00567 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99538 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46879 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.46978 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46929 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99764 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00158 * 354.88661 * 13 12 11 15 15 C 1.50699 * 119.99693 * 175.15780 * 13 12 11 16 16 H 1.09000 * 109.43851 * 335.28750 * 15 13 12 17 17 C 1.53075 * 109.43487 * 215.36823 * 15 13 12 18 18 C 1.53410 * 108.28825 * 191.74962 * 17 15 13 19 19 O 1.42828 * 108.37392 * 64.74874 * 18 17 15 20 20 C 1.35839 * 117.86137 * 310.84741 * 19 18 17 21 21 C 1.39145 * 118.50086 * 197.01694 * 20 19 18 22 22 C 1.37972 * 120.21718 * 180.18225 * 21 20 19 23 23 C 1.38290 * 119.95861 * 0.02562 * 22 21 20 24 24 C 1.38100 * 119.98090 * 359.92689 * 23 22 21 25 25 C 1.38319 * 121.79165 * 17.11788 * 20 19 18 26 26 H 0.96999 * 120.00199 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47283 * 60.00192 * 9 7 2 28 28 H 1.09000 * 109.47413 * 300.00163 * 9 7 2 29 29 H 1.08998 * 109.47224 * 60.00738 * 10 9 7 30 30 H 1.08994 * 109.47157 * 299.99924 * 10 9 7 31 31 H 1.08989 * 109.47007 * 59.99884 * 11 10 9 32 32 H 1.09002 * 109.46652 * 299.99446 * 11 10 9 33 33 H 0.96998 * 120.00046 * 0.02562 * 12 11 10 34 34 H 1.08998 * 109.70323 * 311.44739 * 17 15 13 35 35 H 1.08997 * 109.69801 * 72.05152 * 17 15 13 36 36 H 1.09002 * 109.67980 * 184.47285 * 18 17 15 37 37 H 1.09001 * 109.68642 * 304.98677 * 18 17 15 38 38 H 1.07996 * 119.89171 * 0.16446 * 21 20 19 39 39 H 1.07994 * 120.02027 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.00887 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.84031 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9832 -7.3713 0.0006 14 8 0.7947 -7.5943 0.0938 15 6 2.9582 -8.5152 -0.1089 16 1 3.8670 -8.1711 -0.6028 17 6 2.3289 -9.6441 -0.9290 18 6 3.2052 -10.8943 -0.7790 19 8 3.1651 -11.3111 0.5865 20 6 3.3856 -10.3725 1.5434 21 6 3.7065 -10.7976 2.8289 22 6 3.9339 -9.8747 3.8289 23 6 3.8426 -8.5224 3.5545 24 6 3.5253 -8.0969 2.2795 25 6 3.2971 -9.0193 1.2710 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.8541 -5.0446 -0.8902 32 1 0.8535 -5.0451 0.8897 33 1 3.3861 -5.9234 0.0016 34 1 1.3253 -9.8523 -0.5582 35 1 2.2805 -9.3530 -1.9783 36 1 2.8215 -11.6903 -1.4174 37 1 4.2314 -10.6595 -1.0619 38 1 3.7775 -11.8534 3.0446 39 1 4.1832 -10.2081 4.8254 40 1 4.0200 -7.7992 4.3368 41 1 3.4549 -7.0402 2.0676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:39 Heat of formation + Delta-G solvation = -92.269634 kcal Electronic energy + Delta-G solvation = -22266.976817 eV Core-core repulsion = 18917.131223 eV Total energy + Delta-G solvation = -3349.845594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11204 -40.41163 -38.46316 -37.05773 -35.36484 -35.16502 -33.00807 -31.62516 -31.20997 -28.99155 -27.23991 -25.12738 -24.56736 -23.55890 -22.36079 -21.82008 -20.69219 -19.00105 -18.57096 -18.04332 -17.72243 -17.18013 -16.86839 -16.50681 -16.43528 -15.92175 -15.45574 -15.09508 -15.03389 -14.73067 -14.35409 -14.23629 -14.17890 -13.76846 -13.55321 -13.38689 -12.94228 -12.76025 -12.56589 -12.51404 -12.38903 -12.08300 -11.85612 -11.69641 -11.66670 -11.58721 -11.25930 -10.88230 -10.56401 -10.17041 -9.81747 -9.16859 -8.20387 -6.32053 0.25804 0.41961 1.41428 1.42707 1.48751 1.53702 2.07053 2.35486 2.41976 2.76653 3.13517 3.40463 3.55200 3.66451 3.83043 4.05999 4.10052 4.17344 4.18710 4.19519 4.37105 4.49105 4.49978 4.51954 4.52559 4.65131 4.88069 4.91760 4.95651 4.99694 5.07207 5.15204 5.28227 5.38293 5.41732 5.50976 5.55426 5.68989 5.81305 5.83028 6.20894 6.43360 6.48283 6.85645 7.15196 7.37791 8.91756 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.002898 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.020093 B = 9659.220391 C =10281.701408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.712 5.712 13 C 0.521 3.479 14 O -0.582 6.582 15 C -0.057 4.057 16 H 0.132 0.868 17 C -0.147 4.147 18 C 0.064 3.936 19 O -0.329 6.329 20 C 0.125 3.875 21 C -0.160 4.160 22 C -0.082 4.082 23 C -0.158 4.158 24 C -0.100 4.100 25 C -0.166 4.166 26 H 0.263 0.737 27 H -0.008 1.008 28 H -0.010 1.010 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.416 0.584 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.172 -23.274 1.742 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.364 5.364 13 C 0.308 3.692 14 O -0.462 6.462 15 C -0.078 4.078 16 H 0.150 0.850 17 C -0.185 4.185 18 C -0.011 4.011 19 O -0.243 6.243 20 C 0.080 3.920 21 C -0.178 4.178 22 C -0.099 4.099 23 C -0.176 4.176 24 C -0.118 4.118 25 C -0.167 4.167 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.154 0.846 37 H 0.105 0.895 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.145 -23.503 1.798 26.516 hybrid contribution -0.010 1.565 -0.144 1.572 sum 12.135 -21.938 1.654 25.125 Atomic orbital electron populations 1.70111 1.07982 1.27811 1.51694 1.26032 0.95733 1.03594 0.94773 0.85415 0.78707 0.78254 0.78474 1.19791 1.21113 1.18344 1.21681 0.93773 0.91968 1.50449 0.91452 1.18941 0.94444 0.93030 0.94997 1.21597 0.98407 0.91637 1.02244 1.21254 0.91992 0.85596 1.00643 1.46087 1.11172 1.04923 1.74175 1.20831 0.89153 0.84363 0.74897 1.90684 1.19309 1.85225 1.50945 1.20226 0.99061 0.93809 0.94709 0.84983 1.22178 0.99932 0.94549 1.01826 1.23250 1.00853 0.97524 0.79442 1.85962 1.86529 1.35458 1.16370 1.18853 0.96119 0.86965 0.90053 1.20915 1.04524 1.01745 0.90625 1.21323 0.96613 0.92248 0.99744 1.21336 1.02547 0.97011 0.96685 1.21208 0.97842 0.99309 0.93428 1.19481 1.08296 0.93043 0.95918 0.92813 0.98987 0.99118 0.91348 0.91109 0.93019 0.93548 0.74700 0.91784 0.87431 0.84598 0.89452 0.83559 0.82417 0.84041 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.81 5.27 30.60 0.16 -3.65 16 11 C 0.13 4.51 5.68 86.38 0.49 5.00 16 12 N -0.71 -19.11 4.83 -463.05 -2.24 -21.35 16 13 C 0.52 15.08 5.80 87.66 0.51 15.59 16 14 O -0.58 -22.58 16.07 -3.03 -0.05 -22.63 16 15 C -0.06 -1.19 2.70 -12.24 -0.03 -1.23 16 16 H 0.13 1.88 8.13 -2.39 -0.02 1.86 16 17 C -0.15 -2.75 5.35 30.76 0.16 -2.58 16 18 C 0.06 0.89 7.03 72.12 0.51 1.39 16 19 O -0.33 -6.81 10.27 -91.75 -0.94 -7.75 16 20 C 0.13 2.80 6.47 22.51 0.15 2.95 16 21 C -0.16 -3.05 9.94 22.42 0.22 -2.83 16 22 C -0.08 -1.38 10.04 22.22 0.22 -1.16 16 23 C -0.16 -3.06 10.04 22.25 0.22 -2.84 16 24 C -0.10 -2.26 9.10 22.32 0.20 -2.05 16 25 C -0.17 -3.81 5.42 -19.74 -0.11 -3.92 16 26 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.42 8.30 8.41 -92.71 -0.78 7.52 16 34 H 0.06 1.62 7.46 -2.39 -0.02 1.60 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 40 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.12 2.75 6.74 -2.91 -0.02 2.73 16 Total: -1.00 -74.14 341.94 2.88 -71.26 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.25 Total: 15.18 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.55 Total: -23.41 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.95 Total: -78.18 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.99 Total: -30.39 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.14 2.88 -71.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.010 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds