Wall clock time and date at job start Tue Mar 31 2020 06:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48502 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46622 * 299.99162 * 3 2 1 6 6 H 1.48499 * 109.47245 * 59.99546 * 3 2 1 7 7 C 1.37878 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47353 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47293 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47062 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00165 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99956 * 5.10957 * 13 12 11 15 15 C 1.50692 * 120.00315 * 185.11155 * 13 12 11 16 16 H 1.09002 * 109.43965 * 24.37986 * 15 13 12 17 17 C 1.53078 * 109.40860 * 144.27688 * 15 13 12 18 18 C 1.53408 * 108.28973 * 168.29718 * 17 15 13 19 19 O 1.42819 * 108.39866 * 295.30480 * 18 17 15 20 20 C 1.35841 * 117.87482 * 49.11854 * 19 18 17 21 21 C 1.39151 * 118.50442 * 162.87756 * 20 19 18 22 22 C 1.37964 * 120.21123 * 179.78790 * 21 20 19 23 23 C 1.38288 * 119.96818 * 359.97438 * 22 21 20 24 24 C 1.38107 * 119.97497 * 0.08822 * 23 22 21 25 25 C 1.38366 * 121.80365 * 342.81607 * 20 19 18 26 26 H 0.96996 * 119.99977 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47145 * 59.99439 * 9 7 2 28 28 H 1.08995 * 109.47288 * 299.99380 * 9 7 2 29 29 H 1.08992 * 109.47048 * 59.99905 * 10 9 7 30 30 H 1.09003 * 109.47022 * 299.99920 * 10 9 7 31 31 H 1.08992 * 109.47290 * 59.99883 * 11 10 9 32 32 H 1.09003 * 109.46882 * 299.99835 * 11 10 9 33 33 H 0.97001 * 120.00057 * 359.97438 * 12 11 10 34 34 H 1.08998 * 109.69964 * 288.00379 * 17 15 13 35 35 H 1.08997 * 109.69923 * 48.56367 * 17 15 13 36 36 H 1.08998 * 109.67779 * 175.57446 * 18 17 15 37 37 H 1.09001 * 109.67757 * 55.03351 * 18 17 15 38 38 H 1.07990 * 119.89211 * 359.77412 * 21 20 19 39 39 H 1.08005 * 120.01616 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.01435 * 180.02562 * 23 22 21 41 41 H 1.08010 * 119.83959 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1006 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7945 -7.5944 -0.0933 15 6 2.9573 -8.5149 0.1175 16 1 3.8659 -8.1686 0.6101 17 6 2.3263 -9.6382 0.9442 18 6 3.2021 -10.8898 0.8035 19 8 3.1649 -11.3152 -0.5594 20 6 3.3875 -10.3829 -1.5220 21 6 3.7133 -10.8163 -2.8035 22 6 3.9422 -9.8998 -3.8090 23 6 3.8475 -8.5458 -3.5443 24 6 3.5256 -8.1121 -2.2732 25 6 3.2971 -9.0275 -1.2591 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8904 30 1 2.8719 -3.6044 -0.8895 31 1 0.8539 -5.0446 -0.8902 32 1 0.8533 -5.0450 0.8897 33 1 3.3859 -5.9234 0.0008 34 1 2.2766 -9.3403 1.9915 35 1 1.3228 -9.8478 0.5738 36 1 2.8167 -11.6816 1.4458 37 1 4.2279 -10.6537 1.0865 38 1 3.7873 -11.8734 -3.0116 39 1 4.1953 -10.2397 -4.8025 40 1 4.0262 -7.8278 -4.3310 41 1 3.4527 -7.0541 -2.0688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:43 Heat of formation + Delta-G solvation = -71.378878 kcal Electronic energy + Delta-G solvation = -22262.994260 eV Core-core repulsion = 18914.054558 eV Total energy + Delta-G solvation = -3348.939703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24088 -39.28395 -37.71057 -35.54606 -34.40056 -33.32848 -31.29472 -30.81603 -30.42597 -27.46183 -26.01761 -24.05583 -23.25441 -22.56906 -20.93315 -20.56914 -19.67430 -18.15561 -17.05450 -16.93608 -16.44921 -16.30447 -15.57489 -15.19208 -15.12298 -14.50675 -14.41680 -14.12273 -13.86558 -13.80965 -13.47090 -13.20577 -12.69112 -12.32466 -12.15467 -11.88212 -11.78822 -11.71310 -11.26921 -11.12486 -10.94638 -10.85917 -10.77623 -10.60092 -9.96975 -9.91213 -9.43745 -9.14489 -8.98730 -8.84856 -8.40272 -8.37186 -6.04558 -4.07813 1.05813 1.22421 2.64393 3.00646 3.24437 3.28007 3.35699 3.39094 3.59910 4.24786 4.36985 4.41881 4.44071 4.66061 4.84517 4.88364 4.91749 5.00454 5.17977 5.24536 5.27788 5.31157 5.31396 5.59379 5.67693 5.72370 5.77389 5.86534 6.05958 6.11219 6.20872 6.33514 6.41613 6.54660 6.55244 6.77526 6.95820 7.19152 7.60424 7.61340 7.72412 7.94021 8.28706 8.35518 8.99109 9.56660 11.06761 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.002894 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.635233 B = 9671.493192 C =10292.144127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.725 5.725 13 C 0.520 3.480 14 O -0.534 6.534 15 C -0.064 4.064 16 H 0.101 0.899 17 C -0.148 4.148 18 C 0.064 3.936 19 O -0.316 6.316 20 C 0.140 3.860 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.149 4.149 24 C -0.081 4.081 25 C -0.149 4.149 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.456 -22.647 -1.705 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.376 5.376 13 C 0.305 3.695 14 O -0.411 6.411 15 C -0.085 4.085 16 H 0.119 0.881 17 C -0.185 4.185 18 C -0.011 4.011 19 O -0.230 6.230 20 C 0.095 3.905 21 C -0.170 4.170 22 C -0.103 4.103 23 C -0.167 4.167 24 C -0.099 4.099 25 C -0.151 4.151 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.381 -22.866 -1.760 24.778 hybrid contribution 0.866 1.414 0.157 1.666 sum 10.247 -21.452 -1.603 23.827 Atomic orbital electron populations 1.69973 1.06069 1.26614 1.50585 1.25035 0.94858 0.99337 0.95256 0.86527 0.80045 0.83742 0.77626 1.19744 1.20975 1.20990 1.21233 0.93019 0.90915 1.50893 0.92590 1.19033 0.93842 0.90865 0.97666 1.21890 0.99768 0.93304 1.00890 1.21680 0.91889 0.85075 1.02087 1.46324 1.10815 1.05841 1.74654 1.20173 0.89193 0.83713 0.76457 1.90706 1.16939 1.84544 1.48880 1.20184 0.98998 0.95127 0.94220 0.88111 1.22172 1.01264 0.93925 1.01187 1.22994 0.99963 0.97618 0.80498 1.85981 1.86472 1.35318 1.15205 1.18624 0.95700 0.86986 0.89179 1.20578 1.04909 1.00614 0.90883 1.20967 0.97905 0.92838 0.98572 1.21050 1.02867 0.95956 0.96821 1.21060 0.96858 0.99419 0.92563 1.19363 1.07473 0.92657 0.95582 0.92954 0.96266 0.96288 0.92702 0.92707 0.91643 0.91744 0.76770 0.89236 0.88651 0.87020 0.91590 0.85142 0.85293 0.85537 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.12 1.98 5.68 -4.04 -0.02 1.96 16 12 N -0.73 -10.01 4.85 -60.30 -0.29 -10.30 16 13 C 0.52 7.58 5.79 -10.99 -0.06 7.52 16 14 O -0.53 -10.05 16.07 5.55 0.09 -9.97 16 15 C -0.06 -0.71 2.70 -92.85 -0.25 -0.96 16 16 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 17 C -0.15 -1.46 5.35 -26.48 -0.14 -1.61 16 18 C 0.06 0.52 7.03 37.37 0.26 0.78 16 19 O -0.32 -3.49 10.27 -19.24 -0.20 -3.69 16 20 C 0.14 1.65 6.47 -39.20 -0.25 1.40 16 21 C -0.15 -1.57 9.94 -39.34 -0.39 -1.96 16 22 C -0.08 -0.80 10.04 -39.66 -0.40 -1.20 16 23 C -0.15 -1.54 10.05 -39.61 -0.40 -1.94 16 24 C -0.08 -0.95 9.10 -39.53 -0.36 -1.31 16 25 C -0.15 -1.79 5.42 -104.44 -0.57 -2.35 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.40 4.36 8.43 -40.82 -0.34 4.02 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.18 7.46 -51.93 -0.39 0.80 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.13 1.45 6.77 -52.48 -0.36 1.10 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -33.38 341.99 -8.93 -42.31 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.12 Total: 1.05 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -3.27 Total: -14.91 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.44 Total: -36.25 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.11 Total: -13.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.38 -8.93 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.072 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds