Wall clock time and date at job start Tue Mar 31 2020 06:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48502 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46622 * 299.99162 * 3 2 1 6 6 H 1.48499 * 109.47245 * 59.99546 * 3 2 1 7 7 C 1.37878 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47353 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47293 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47062 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00165 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99956 * 5.10957 * 13 12 11 15 15 C 1.50692 * 120.00315 * 185.11155 * 13 12 11 16 16 H 1.09002 * 109.43965 * 24.37986 * 15 13 12 17 17 C 1.53078 * 109.40860 * 144.27688 * 15 13 12 18 18 C 1.53408 * 108.28973 * 168.29718 * 17 15 13 19 19 O 1.42819 * 108.39866 * 295.30480 * 18 17 15 20 20 C 1.35841 * 117.87482 * 49.11854 * 19 18 17 21 21 C 1.39151 * 118.50442 * 162.87756 * 20 19 18 22 22 C 1.37964 * 120.21123 * 179.78790 * 21 20 19 23 23 C 1.38288 * 119.96818 * 359.97438 * 22 21 20 24 24 C 1.38107 * 119.97497 * 0.08822 * 23 22 21 25 25 C 1.38366 * 121.80365 * 342.81607 * 20 19 18 26 26 H 0.96996 * 119.99977 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47145 * 59.99439 * 9 7 2 28 28 H 1.08995 * 109.47288 * 299.99380 * 9 7 2 29 29 H 1.08992 * 109.47048 * 59.99905 * 10 9 7 30 30 H 1.09003 * 109.47022 * 299.99920 * 10 9 7 31 31 H 1.08992 * 109.47290 * 59.99883 * 11 10 9 32 32 H 1.09003 * 109.46882 * 299.99835 * 11 10 9 33 33 H 0.97001 * 120.00057 * 359.97438 * 12 11 10 34 34 H 1.08998 * 109.69964 * 288.00379 * 17 15 13 35 35 H 1.08997 * 109.69923 * 48.56367 * 17 15 13 36 36 H 1.08998 * 109.67779 * 175.57446 * 18 17 15 37 37 H 1.09001 * 109.67757 * 55.03351 * 18 17 15 38 38 H 1.07990 * 119.89211 * 359.77412 * 21 20 19 39 39 H 1.08005 * 120.01616 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.01435 * 180.02562 * 23 22 21 41 41 H 1.08010 * 119.83959 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1006 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7945 -7.5944 -0.0933 15 6 2.9573 -8.5149 0.1175 16 1 3.8659 -8.1686 0.6101 17 6 2.3263 -9.6382 0.9442 18 6 3.2021 -10.8898 0.8035 19 8 3.1649 -11.3152 -0.5594 20 6 3.3875 -10.3829 -1.5220 21 6 3.7133 -10.8163 -2.8035 22 6 3.9422 -9.8998 -3.8090 23 6 3.8475 -8.5458 -3.5443 24 6 3.5256 -8.1121 -2.2732 25 6 3.2971 -9.0275 -1.2591 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8904 30 1 2.8719 -3.6044 -0.8895 31 1 0.8539 -5.0446 -0.8902 32 1 0.8533 -5.0450 0.8897 33 1 3.3859 -5.9234 0.0008 34 1 2.2766 -9.3403 1.9915 35 1 1.3228 -9.8478 0.5738 36 1 2.8167 -11.6816 1.4458 37 1 4.2279 -10.6537 1.0865 38 1 3.7873 -11.8734 -3.0116 39 1 4.1953 -10.2397 -4.8025 40 1 4.0262 -7.8278 -4.3310 41 1 3.4527 -7.0541 -2.0688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:43 Heat of formation + Delta-G solvation = -92.367189 kcal Electronic energy + Delta-G solvation = -22263.904382 eV Core-core repulsion = 18914.054558 eV Total energy + Delta-G solvation = -3349.849824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11028 -40.41061 -38.46444 -37.05812 -35.36392 -35.16598 -33.00817 -31.62574 -31.21127 -28.99265 -27.24018 -25.12846 -24.56872 -23.55830 -22.36070 -21.81948 -20.69317 -19.00087 -18.57361 -18.04429 -17.72201 -17.17836 -16.86911 -16.50645 -16.43249 -15.92225 -15.45425 -15.09708 -15.03409 -14.72936 -14.36028 -14.23814 -14.18182 -13.76299 -13.55420 -13.38726 -12.94238 -12.78959 -12.56800 -12.51182 -12.35818 -12.08348 -11.85628 -11.70105 -11.66708 -11.58956 -11.24241 -10.88120 -10.57245 -10.17048 -9.81917 -9.16709 -8.20574 -6.32113 0.25957 0.41891 1.41400 1.41532 1.48645 1.54740 2.07077 2.35482 2.41868 2.76671 3.13444 3.40363 3.55235 3.66362 3.82976 4.05984 4.10016 4.17375 4.18675 4.19544 4.37078 4.49065 4.50075 4.51955 4.52560 4.65135 4.88013 4.91753 4.95659 4.99697 5.07206 5.15220 5.28252 5.38324 5.41808 5.51152 5.55452 5.68963 5.81339 5.83096 6.20890 6.43396 6.48285 6.85787 7.15185 7.37775 8.91784 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.002894 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.635233 B = 9671.493192 C =10292.144127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.712 5.712 13 C 0.521 3.479 14 O -0.582 6.582 15 C -0.057 4.057 16 H 0.132 0.868 17 C -0.147 4.147 18 C 0.064 3.936 19 O -0.329 6.329 20 C 0.125 3.875 21 C -0.160 4.160 22 C -0.082 4.082 23 C -0.158 4.158 24 C -0.100 4.100 25 C -0.166 4.166 26 H 0.263 0.737 27 H -0.010 1.010 28 H -0.008 1.008 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.416 0.584 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.180 -23.303 -1.698 26.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.364 5.364 13 C 0.308 3.692 14 O -0.462 6.462 15 C -0.078 4.078 16 H 0.150 0.850 17 C -0.185 4.185 18 C -0.011 4.011 19 O -0.243 6.243 20 C 0.080 3.920 21 C -0.178 4.178 22 C -0.099 4.099 23 C -0.176 4.176 24 C -0.118 4.118 25 C -0.167 4.167 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.010 0.990 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.105 0.895 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.158 -23.534 -1.748 26.547 hybrid contribution -0.022 1.572 0.129 1.577 sum 12.136 -21.963 -1.620 25.145 Atomic orbital electron populations 1.70117 1.07973 1.27741 1.51772 1.26032 0.95738 1.03596 0.94797 0.85365 0.79247 0.78617 0.77601 1.18099 1.20637 1.20595 1.21707 0.93770 0.91955 1.50312 0.91460 1.18946 0.94449 0.93039 0.95007 1.21595 0.98407 0.91640 1.02247 1.21251 0.91991 0.85592 1.00646 1.46087 1.11174 1.04922 1.74172 1.20832 0.89149 0.84361 0.74906 1.90687 1.19300 1.85224 1.50964 1.20228 0.99061 0.93796 0.94723 0.84987 1.22178 0.99926 0.94610 1.01774 1.23248 1.00856 0.97414 0.79541 1.85960 1.86513 1.35566 1.16280 1.18869 0.96108 0.87034 0.89995 1.20914 1.04489 1.01750 0.90651 1.21322 0.96625 0.92293 0.99692 1.21337 1.02529 0.96953 0.96751 1.21191 0.97845 0.99345 0.93400 1.19479 1.08275 0.93039 0.95925 0.92820 0.99122 0.98961 0.91109 0.91350 0.93535 0.93029 0.74700 0.87438 0.91782 0.84598 0.89457 0.83559 0.82415 0.84034 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 13.29 21.45 0.28 -56.79 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -29.86 9.11 25.60 0.23 -29.62 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.13 4.51 5.68 86.38 0.49 5.00 16 12 N -0.71 -19.11 4.85 -463.07 -2.25 -21.35 16 13 C 0.52 15.08 5.79 87.66 0.51 15.59 16 14 O -0.58 -22.59 16.07 -3.06 -0.05 -22.63 16 15 C -0.06 -1.19 2.70 -12.24 -0.03 -1.23 16 16 H 0.13 1.88 8.13 -2.39 -0.02 1.86 16 17 C -0.15 -2.75 5.35 30.76 0.16 -2.59 16 18 C 0.06 0.89 7.03 72.12 0.51 1.40 16 19 O -0.33 -6.81 10.27 -91.77 -0.94 -7.75 16 20 C 0.13 2.80 6.47 22.52 0.15 2.94 16 21 C -0.16 -3.05 9.94 22.42 0.22 -2.82 16 22 C -0.08 -1.38 10.04 22.22 0.22 -1.15 16 23 C -0.16 -3.05 10.05 22.25 0.22 -2.83 16 24 C -0.10 -2.25 9.10 22.30 0.20 -2.05 16 25 C -0.17 -3.80 5.42 -19.75 -0.11 -3.91 16 26 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 27 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.42 8.29 8.43 -92.71 -0.78 7.51 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.62 7.46 -2.39 -0.02 1.60 16 36 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.15 2.21 8.06 -2.92 -0.02 2.19 16 39 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 41 H 0.12 2.74 6.77 -2.91 -0.02 2.73 16 Total: -1.00 -74.15 341.99 2.87 -71.28 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.24 Total: 15.04 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.55 Total: -23.35 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.96 Total: -78.14 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.99 Total: -30.39 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.15 2.87 -71.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.091 kcal (2) G-P(sol) polarization free energy of solvation -74.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds