Wall clock time and date at job start Tue Mar 31 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47298 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00283 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00337 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.69967 * 60.55371 * 15 13 12 17 17 C 1.53411 * 109.69900 * 299.99428 * 15 13 12 18 18 O 1.42820 * 108.39278 * 175.59828 * 17 15 13 19 19 C 1.35841 * 117.87447 * 49.11872 * 18 17 15 20 20 C 1.39153 * 118.50477 * 162.87525 * 19 18 17 21 21 C 1.37959 * 120.21686 * 179.78075 * 20 19 18 22 22 C 1.38291 * 119.96250 * 359.97438 * 21 20 19 23 23 C 1.38106 * 119.97838 * 0.09843 * 22 21 20 24 24 C 1.38368 * 121.80384 * 342.81364 * 19 18 17 25 25 C 1.50763 * 121.40866 * 0.54622 * 24 19 18 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 32 32 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 33 33 H 0.96997 * 119.99674 * 359.97438 * 12 11 10 34 34 H 1.09000 * 109.67805 * 295.32857 * 17 15 13 35 35 H 1.09002 * 109.67777 * 55.83655 * 17 15 13 36 36 H 1.08003 * 119.88858 * 359.77418 * 20 19 18 37 37 H 1.08002 * 120.02130 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.01412 * 180.08325 * 22 21 20 39 39 H 1.07999 * 119.84184 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.44168 * 222.01275 * 25 24 19 41 41 H 1.08998 * 109.44175 * 102.13141 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7906 -7.5929 -0.0024 15 6 2.9622 -8.5168 -0.0014 16 1 3.5839 -8.4687 0.8926 17 6 3.8479 -8.4400 -1.2517 18 8 4.8298 -9.4741 -1.1726 19 6 4.4060 -10.7313 -0.8808 20 6 5.2581 -11.7983 -1.1488 21 6 4.8655 -13.0894 -0.8622 22 6 3.6215 -13.3257 -0.3062 23 6 2.7726 -12.2693 -0.0402 24 6 3.1604 -10.9711 -0.3280 25 6 2.2024 -9.8453 -0.0318 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 0.8533 -5.0451 0.8886 32 1 0.8539 -5.0446 -0.8913 33 1 3.3858 -5.9234 -0.0002 34 1 3.2371 -8.5812 -2.1434 35 1 4.3399 -7.4683 -1.2939 36 1 6.2300 -11.6150 -1.5827 37 1 5.5292 -13.9152 -1.0719 38 1 3.3138 -14.3359 -0.0803 39 1 1.8018 -12.4563 0.3944 40 1 1.7306 -10.0156 0.9359 41 1 1.4365 -9.8075 -0.8065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:46 Heat of formation + Delta-G solvation = -74.348461 kcal Electronic energy + Delta-G solvation = -21767.494229 eV Core-core repulsion = 18418.425756 eV Total energy + Delta-G solvation = -3349.068473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20188 -39.50092 -37.71752 -35.61207 -34.40582 -33.39579 -31.62605 -30.70788 -30.50165 -26.97177 -25.97904 -24.69862 -23.05233 -22.73844 -21.06952 -20.63677 -19.60313 -18.15030 -17.54133 -16.73415 -16.40367 -15.90539 -15.61550 -15.40269 -14.98363 -14.71112 -14.47777 -14.27511 -13.95127 -13.65201 -13.57325 -13.26919 -13.12476 -12.32805 -12.07119 -11.91361 -11.80481 -11.75164 -11.41968 -11.15886 -10.93587 -10.88552 -10.78647 -10.62425 -9.97183 -9.92340 -9.43121 -9.15868 -9.08003 -8.90573 -8.45461 -8.40483 -6.05067 -4.08352 1.01742 1.12899 2.54825 2.91750 3.20911 3.28708 3.35307 3.38052 3.47458 4.18215 4.31313 4.41129 4.45262 4.53660 4.71058 4.78175 4.91393 5.02801 5.13344 5.18169 5.25732 5.30772 5.39117 5.63120 5.65238 5.67304 5.70505 5.81408 5.98609 6.08877 6.17612 6.23788 6.36535 6.46587 6.52950 6.74397 6.94086 7.12172 7.54890 7.59299 7.71192 7.93230 8.21239 8.34402 8.98250 9.56045 11.06164 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.044658 B = 0.002361 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.837028 B =11857.084436 C =12382.748451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.724 5.724 13 C 0.516 3.484 14 O -0.536 6.536 15 C -0.148 4.148 16 H 0.112 0.888 17 C 0.073 3.927 18 O -0.310 6.310 19 C 0.127 3.873 20 C -0.148 4.148 21 C -0.091 4.091 22 C -0.152 4.152 23 C -0.084 4.084 24 C -0.155 4.155 25 C -0.060 4.060 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.821 -25.418 -1.297 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.374 5.374 13 C 0.301 3.699 14 O -0.413 6.413 15 C -0.170 4.170 16 H 0.130 0.870 17 C -0.003 4.003 18 O -0.224 6.224 19 C 0.082 3.918 20 C -0.166 4.166 21 C -0.109 4.109 22 C -0.170 4.170 23 C -0.102 4.102 24 C -0.155 4.155 25 C -0.097 4.097 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.975 -25.357 -1.341 26.932 hybrid contribution 0.656 1.147 0.133 1.328 sum 9.631 -24.210 -1.207 26.084 Atomic orbital electron populations 1.69965 1.06065 1.26731 1.50474 1.25040 0.94874 0.99351 0.95246 0.86572 0.79792 0.83379 0.78113 1.20645 1.19882 1.21192 1.21193 0.92989 0.90914 1.51040 0.92630 1.19031 0.93837 0.90857 0.97669 1.21898 0.99795 0.93280 1.00944 1.21695 0.91853 0.85035 1.02149 1.46262 1.10953 1.05890 1.74327 1.20129 0.89208 0.83785 0.76767 1.90718 1.16571 1.84644 1.49376 1.22033 0.98164 0.95290 1.01470 0.87044 1.22952 0.90265 0.90553 0.96520 1.86024 1.35772 1.14834 1.85765 1.18746 0.93012 0.84456 0.95565 1.20605 1.00677 0.90722 1.04618 1.20931 0.96359 0.95855 0.97779 1.21036 0.94748 0.99032 1.02199 1.20928 0.99598 0.91216 0.98420 1.19898 0.95452 0.96016 1.04176 1.20310 0.96104 0.88937 1.04341 0.92898 0.96284 0.96257 0.92660 0.92663 0.91630 0.91592 0.76717 0.90867 0.86743 0.85207 0.85466 0.85858 0.85633 0.89275 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 11 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 12 N -0.72 -9.48 5.43 -60.30 -0.33 -9.81 16 13 C 0.52 6.97 7.16 -10.99 -0.08 6.89 16 14 O -0.54 -9.36 15.80 5.56 0.09 -9.27 16 15 C -0.15 -1.52 2.76 -91.52 -0.25 -1.77 16 16 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 17 C 0.07 0.68 6.25 37.37 0.23 0.91 16 18 O -0.31 -3.30 10.27 -19.24 -0.20 -3.50 16 19 C 0.13 1.35 6.47 -39.19 -0.25 1.09 16 20 C -0.15 -1.35 9.94 -39.34 -0.39 -1.75 16 21 C -0.09 -0.71 10.04 -39.66 -0.40 -1.11 16 22 C -0.15 -1.19 10.04 -39.61 -0.40 -1.59 16 23 C -0.08 -0.74 9.67 -39.53 -0.38 -1.12 16 24 C -0.15 -1.58 5.75 -104.44 -0.60 -2.18 16 25 C -0.06 -0.63 4.65 -27.81 -0.13 -0.76 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.40 4.09 7.87 -40.82 -0.32 3.77 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.85 7.50 -51.93 -0.39 0.46 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.04 7.71 -51.93 -0.40 0.64 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -32.42 343.51 -9.06 -41.48 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.15 Total: 0.17 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -3.36 Total: -14.67 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.41 Total: -35.66 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.11 Total: -12.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.42 -9.06 -41.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.870 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds