Wall clock time and date at job start Tue Mar 31 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47298 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00283 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00337 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.69967 * 60.55371 * 15 13 12 17 17 C 1.53411 * 109.69900 * 299.99428 * 15 13 12 18 18 O 1.42820 * 108.39278 * 175.59828 * 17 15 13 19 19 C 1.35841 * 117.87447 * 49.11872 * 18 17 15 20 20 C 1.39153 * 118.50477 * 162.87525 * 19 18 17 21 21 C 1.37959 * 120.21686 * 179.78075 * 20 19 18 22 22 C 1.38291 * 119.96250 * 359.97438 * 21 20 19 23 23 C 1.38106 * 119.97838 * 0.09843 * 22 21 20 24 24 C 1.38368 * 121.80384 * 342.81364 * 19 18 17 25 25 C 1.50763 * 121.40866 * 0.54622 * 24 19 18 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 32 32 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 33 33 H 0.96997 * 119.99674 * 359.97438 * 12 11 10 34 34 H 1.09000 * 109.67805 * 295.32857 * 17 15 13 35 35 H 1.09002 * 109.67777 * 55.83655 * 17 15 13 36 36 H 1.08003 * 119.88858 * 359.77418 * 20 19 18 37 37 H 1.08002 * 120.02130 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.01412 * 180.08325 * 22 21 20 39 39 H 1.07999 * 119.84184 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.44168 * 222.01275 * 25 24 19 41 41 H 1.08998 * 109.44175 * 102.13141 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7906 -7.5929 -0.0024 15 6 2.9622 -8.5168 -0.0014 16 1 3.5839 -8.4687 0.8926 17 6 3.8479 -8.4400 -1.2517 18 8 4.8298 -9.4741 -1.1726 19 6 4.4060 -10.7313 -0.8808 20 6 5.2581 -11.7983 -1.1488 21 6 4.8655 -13.0894 -0.8622 22 6 3.6215 -13.3257 -0.3062 23 6 2.7726 -12.2693 -0.0402 24 6 3.1604 -10.9711 -0.3280 25 6 2.2024 -9.8453 -0.0318 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 0.8533 -5.0451 0.8886 32 1 0.8539 -5.0446 -0.8913 33 1 3.3858 -5.9234 -0.0002 34 1 3.2371 -8.5812 -2.1434 35 1 4.3399 -7.4683 -1.2939 36 1 6.2300 -11.6150 -1.5827 37 1 5.5292 -13.9152 -1.0719 38 1 3.3138 -14.3359 -0.0803 39 1 1.8018 -12.4563 0.3944 40 1 1.7306 -10.0156 0.9359 41 1 1.4365 -9.8075 -0.8065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:45 Heat of formation + Delta-G solvation = -94.225286 kcal Electronic energy + Delta-G solvation = -21768.356153 eV Core-core repulsion = 18418.425756 eV Total energy + Delta-G solvation = -3349.930397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01147 -40.56088 -38.41368 -37.06811 -35.29479 -35.21029 -33.15300 -31.70934 -31.18120 -28.66612 -26.76048 -25.86961 -24.49563 -23.50019 -22.34813 -21.91609 -20.63151 -18.85885 -18.65492 -18.39270 -17.50735 -16.81680 -16.69439 -16.57466 -16.38095 -15.96626 -15.66747 -15.12893 -14.87659 -14.70246 -14.38852 -14.28886 -14.14561 -13.88693 -13.74410 -13.48007 -12.75975 -12.73060 -12.56010 -12.50934 -12.39244 -12.15365 -11.87477 -11.70817 -11.68092 -11.52777 -11.24581 -10.87941 -10.55821 -10.16945 -9.74541 -9.15228 -8.20069 -6.31371 0.35549 0.46015 1.41735 1.42805 1.45484 1.53774 2.01475 2.27863 2.42115 2.80675 3.13830 3.35466 3.50736 3.61828 3.83330 3.95344 4.05968 4.17970 4.20649 4.28430 4.35882 4.41487 4.51012 4.54482 4.60691 4.70683 4.85949 4.92904 4.93760 4.98174 5.09585 5.16675 5.34073 5.38084 5.51932 5.52350 5.60628 5.70354 5.83956 5.85042 6.21605 6.40119 6.47529 6.86407 7.13509 7.38278 8.91933 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.044658 B = 0.002361 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.837028 B =11857.084436 C =12382.748451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.285 1.285 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.711 5.711 13 C 0.520 3.480 14 O -0.579 6.579 15 C -0.135 4.135 16 H 0.128 0.872 17 C 0.073 3.927 18 O -0.317 6.317 19 C 0.105 3.895 20 C -0.158 4.158 21 C -0.089 4.089 22 C -0.152 4.152 23 C -0.094 4.094 24 C -0.169 4.169 25 C -0.057 4.057 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.008 1.008 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.417 0.583 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.087 0.913 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.373 -26.414 -1.293 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.184 1.184 6 H -0.211 1.211 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.005 3.995 12 N -0.363 5.363 13 C 0.306 3.694 14 O -0.458 6.458 15 C -0.156 4.156 16 H 0.146 0.854 17 C -0.002 4.002 18 O -0.231 6.231 19 C 0.060 3.940 20 C -0.177 4.177 21 C -0.107 4.107 22 C -0.170 4.170 23 C -0.112 4.112 24 C -0.170 4.170 25 C -0.095 4.095 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.011 0.989 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.254 0.746 34 H 0.087 0.913 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.105 0.895 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.577 -26.370 -1.337 28.831 hybrid contribution -0.167 1.359 0.131 1.375 sum 11.410 -25.011 -1.206 27.517 Atomic orbital electron populations 1.70112 1.07929 1.27771 1.51723 1.26035 0.95760 1.03588 0.94852 0.85417 0.78700 0.78310 0.78430 1.19869 1.18383 1.21120 1.21685 0.93767 0.91997 1.50350 0.91482 1.18951 0.94482 0.93021 0.95060 1.21603 0.98429 0.91714 1.02276 1.21265 0.91951 0.85443 1.00859 1.46007 1.11344 1.04953 1.73977 1.20635 0.89110 0.84261 0.75345 1.90706 1.18675 1.85230 1.51207 1.21951 0.97399 0.93428 1.02853 0.85432 1.23036 0.90217 0.91377 0.95576 1.86016 1.36016 1.15077 1.85985 1.19015 0.93594 0.84803 0.96566 1.20887 1.01043 0.91025 1.04721 1.21309 0.96677 0.96120 0.96575 1.21385 0.94524 0.99885 1.01225 1.21180 1.00444 0.91111 0.98491 1.19927 0.95461 0.96365 1.05215 1.20239 0.96001 0.89496 1.03721 0.92841 0.99036 0.98925 0.91128 0.91316 0.93165 0.92949 0.74608 0.91327 0.84561 0.84178 0.82705 0.83435 0.84583 0.89462 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 11 C 0.13 4.31 5.67 86.38 0.49 4.80 16 12 N -0.71 -17.79 5.43 -463.08 -2.52 -20.31 16 13 C 0.52 13.79 7.16 87.66 0.63 14.42 16 14 O -0.58 -20.59 15.80 -3.03 -0.05 -20.63 16 15 C -0.13 -2.64 2.76 -11.38 -0.03 -2.67 16 16 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 17 C 0.07 1.27 6.25 72.12 0.45 1.72 16 18 O -0.32 -6.33 10.27 -91.77 -0.94 -7.27 16 19 C 0.10 2.11 6.47 22.52 0.15 2.26 16 20 C -0.16 -2.63 9.94 22.42 0.22 -2.41 16 21 C -0.09 -1.16 10.04 22.22 0.22 -0.94 16 22 C -0.15 -2.04 10.04 22.25 0.22 -1.81 16 23 C -0.09 -1.56 9.67 22.30 0.22 -1.35 16 24 C -0.17 -3.33 5.75 -19.75 -0.11 -3.45 16 25 C -0.06 -1.20 4.65 29.89 0.14 -1.06 16 26 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 27 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.42 7.52 7.87 -92.71 -0.73 6.79 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.14 1.69 7.50 -2.39 -0.02 1.67 16 36 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 1.79 7.71 -2.39 -0.02 1.77 16 Total: -1.00 -71.00 343.51 2.70 -68.30 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.29 Total: 13.05 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 3.60 Total: -22.10 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -2.23 Total: -76.83 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.99 Total: -27.90 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.00 2.70 -68.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.924 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds