Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33404 * 120.00125 * 2 1 4 4 C 1.46326 * 120.00176 * 179.97438 * 3 2 1 5 5 C 1.35200 * 120.00541 * 180.02562 * 4 3 2 6 6 C 1.46217 * 120.00294 * 180.02562 * 5 4 3 7 7 O 1.21736 * 120.00128 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00118 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99745 * 5.58078 * 8 6 5 10 10 C 1.50703 * 109.47150 * 270.00213 * 9 8 6 11 11 H 1.08004 * 119.99725 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00241 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00619 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99937 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47084 * 89.99579 * 14 12 10 16 16 H 1.48493 * 109.47551 * 209.99831 * 14 12 10 17 17 H 1.48509 * 109.46883 * 329.99858 * 14 12 10 18 18 C 1.39917 * 120.00297 * 185.58851 * 8 6 5 19 19 C 1.38880 * 120.04625 * 236.08482 * 18 8 6 20 20 C 1.38110 * 119.95211 * 179.72563 * 19 18 8 21 21 C 1.38478 * 120.04662 * 0.25375 * 20 19 18 22 22 F 1.35099 * 119.95308 * 180.02562 * 21 20 19 23 23 C 1.38485 * 120.09524 * 359.97438 * 21 20 19 24 24 C 1.38107 * 120.04713 * 359.97438 * 23 21 20 25 25 H 1.08992 * 109.47154 * 300.00396 * 1 2 3 26 26 H 1.08999 * 109.46600 * 59.99890 * 1 2 3 27 27 H 1.08994 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99377 * 179.97438 * 2 1 3 29 29 H 1.08011 * 120.00238 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.00094 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.99412 * 359.97438 * 5 4 3 32 32 H 1.08995 * 109.47047 * 30.00492 * 9 8 6 33 33 H 1.08994 * 109.46898 * 150.00805 * 9 8 6 34 34 H 0.96995 * 120.00272 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.02250 * 359.97438 * 19 18 8 36 36 H 1.07994 * 119.97693 * 180.27386 * 20 19 18 37 37 H 1.08004 * 119.97235 * 180.02562 * 23 21 20 38 38 H 1.08002 * 120.01737 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.1553 0.0000 4 6 3.6374 1.1553 0.0006 5 6 4.3135 2.3261 0.0011 6 6 5.7757 2.3261 0.0011 7 8 6.3843 1.2718 0.0011 8 7 6.4496 3.4933 0.0021 9 6 5.7223 4.7589 0.1267 10 6 5.3532 5.2632 -1.2447 11 1 5.6321 4.6973 -2.1213 12 6 4.6586 6.4464 -1.3802 13 7 4.3369 6.8869 -2.5770 14 14 4.1756 7.4249 0.1360 15 1 5.2570 8.3863 0.4700 16 1 2.9186 8.1680 -0.1340 17 1 3.9672 6.4981 1.2776 18 6 7.8438 3.4962 -0.1159 19 6 8.6222 4.1182 0.8516 20 6 9.9985 4.1151 0.7362 21 6 10.6021 3.4969 -0.3460 22 9 11.9485 3.4945 -0.4568 23 6 9.8276 2.8802 -1.3144 24 6 8.4510 2.8801 -1.2023 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.0470 -0.9354 0.0004 29 1 1.6341 2.0907 -0.0004 30 1 4.1774 0.2200 0.0014 31 1 3.7734 3.2615 0.0007 32 1 4.8164 4.6013 0.7118 33 1 6.3542 5.4934 0.6259 34 1 3.8486 7.7195 -2.6723 35 1 8.1518 4.6005 1.6957 36 1 10.6043 4.5947 1.4905 37 1 10.3004 2.3983 -2.1574 38 1 7.8475 2.3986 -1.9575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073753755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = -20.645806 kcal Electronic energy + Delta-G solvation = -21883.611120 eV Core-core repulsion = 18413.411063 eV Total energy + Delta-G solvation = -3470.200056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.63152 -40.07363 -38.00954 -35.67940 -35.15342 -32.66634 -32.10537 -30.89993 -29.59199 -27.83831 -26.95693 -23.51235 -23.08238 -22.25304 -21.02177 -19.56117 -18.41891 -17.46853 -17.16592 -16.95655 -16.31603 -15.85051 -15.31522 -14.59483 -14.54926 -14.44489 -13.95029 -13.85349 -13.39092 -13.30460 -13.14143 -12.90403 -12.78810 -12.33155 -12.22561 -11.98611 -11.77572 -11.63092 -11.30636 -11.10478 -10.86217 -10.72943 -10.59735 -10.40934 -9.75797 -9.47815 -8.84176 -8.83423 -8.79779 -8.15383 -7.56766 -6.28547 -4.31369 0.99608 1.44760 1.52746 2.79201 3.11788 3.18027 3.20920 3.53306 3.76827 4.00672 4.19011 4.52960 4.82299 5.00273 5.02577 5.05340 5.08553 5.30206 5.42341 5.51088 5.53615 5.59737 5.65277 5.78437 5.85731 5.88087 6.13415 6.28123 6.33449 6.37959 6.45999 6.47641 6.59689 6.64851 6.79026 6.93796 6.95949 7.31026 7.41684 7.86094 8.27221 8.67274 8.78125 9.28595 10.83903 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.005431 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.813385 B = 5154.621646 C = 7170.310264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.143 4.143 3 C -0.135 4.135 4 C -0.060 4.060 5 C -0.178 4.178 6 C 0.553 3.447 7 O -0.556 6.556 8 N -0.547 5.547 9 C 0.207 3.793 10 C -0.542 4.542 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.887 5.887 14 Si 0.868 3.132 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.170 3.830 19 C -0.106 4.106 20 C -0.140 4.140 21 C 0.075 3.925 22 F -0.147 7.147 23 C -0.139 4.139 24 C -0.080 4.080 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.268 0.732 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -7.936 6.754 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.079 4.079 5 C -0.198 4.198 6 C 0.345 3.655 7 O -0.437 6.437 8 N -0.272 5.272 9 C 0.087 3.913 10 C -0.580 4.580 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.524 5.524 14 Si 0.695 3.305 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.188 1.188 18 C 0.077 3.923 19 C -0.125 4.125 20 C -0.160 4.160 21 C 0.056 3.944 22 F -0.126 7.126 23 C -0.158 4.158 24 C -0.100 4.100 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.160 0.840 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.327 -8.291 6.654 10.636 hybrid contribution -0.099 0.952 0.477 1.069 sum 0.229 -7.339 7.130 10.235 Atomic orbital electron populations 1.20867 0.92882 1.02301 1.02274 1.23586 0.96140 0.97773 0.98615 1.21868 0.93048 0.98627 1.01794 1.22418 0.93113 0.98223 0.94177 1.23217 0.93063 0.99917 1.03635 1.18368 0.88524 0.82700 0.75863 1.90761 1.70715 1.31036 1.51147 1.45546 1.03536 1.08405 1.69716 1.20040 0.92105 0.80114 0.99003 1.21294 1.37248 1.07803 0.91704 0.90188 1.24839 0.95022 0.96818 0.95833 1.69878 1.38799 1.21747 1.21929 0.86972 0.78900 0.81073 0.83602 1.19743 1.20686 1.18753 1.17622 0.83662 0.97590 0.93407 1.20949 0.92513 1.00747 0.98339 1.20851 0.94890 1.02043 0.98203 1.17607 0.76678 1.02627 0.97523 1.91452 1.29755 1.95158 1.96193 1.20926 0.93658 1.01832 0.99424 1.21014 0.93651 0.98832 0.96463 0.91441 0.91304 0.92054 0.87040 0.86281 0.85796 0.83982 0.93976 0.94726 0.92222 0.84928 0.84813 0.84827 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 10.19 36.01 0.37 -0.75 16 2 C -0.14 -1.57 9.98 -35.99 -0.36 -1.93 16 3 C -0.14 -1.78 9.48 -38.02 -0.36 -2.14 16 4 C -0.06 -0.93 9.37 -37.41 -0.35 -1.28 16 5 C -0.18 -3.22 8.85 -37.46 -0.33 -3.55 16 6 C 0.55 11.28 7.37 -13.06 -0.10 11.18 16 7 O -0.56 -12.13 15.59 5.16 0.08 -12.05 16 8 N -0.55 -11.26 2.56 -116.34 -0.30 -11.56 16 9 C 0.21 4.46 3.75 -5.19 -0.02 4.44 16 10 C -0.54 -13.95 9.85 -34.44 -0.34 -14.29 16 11 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 12 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 13 N -0.89 -25.24 13.96 55.43 0.77 -24.46 16 14 Si 0.87 19.13 27.47 -169.99 -4.67 14.46 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 17 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 18 C 0.17 3.30 5.18 -83.69 -0.43 2.86 16 19 C -0.11 -1.77 9.30 -39.39 -0.37 -2.14 16 20 C -0.14 -2.12 10.02 -39.54 -0.40 -2.51 16 21 C 0.08 1.19 7.30 -39.40 -0.29 0.90 16 22 F -0.15 -2.24 17.26 2.25 0.04 -2.20 16 23 C -0.14 -2.24 10.02 -39.54 -0.40 -2.64 16 24 C -0.08 -1.48 8.93 -39.39 -0.35 -1.83 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 1.13 8.05 -52.49 -0.42 0.70 16 29 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.12 1.91 7.52 -52.48 -0.39 1.52 16 31 H 0.14 2.61 6.30 -52.48 -0.33 2.28 16 32 H 0.04 0.87 5.41 -51.93 -0.28 0.58 16 33 H 0.03 0.72 6.73 -51.93 -0.35 0.37 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.13 1.99 7.78 -52.49 -0.41 1.58 16 36 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 38 H 0.13 2.48 8.04 -52.49 -0.42 2.06 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -29.44 337.47 -7.54 -36.98 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.74 Total: 5.43 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -3.82 Total: -11.68 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.48 Total: -36.02 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.44 -7.54 -36.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073753755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.333 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds