Wall clock time and date at job start Tue Mar 31 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33404 * 120.00125 * 2 1 4 4 C 1.46326 * 120.00176 * 179.97438 * 3 2 1 5 5 C 1.35200 * 120.00541 * 180.02562 * 4 3 2 6 6 C 1.46217 * 120.00294 * 180.02562 * 5 4 3 7 7 O 1.21736 * 120.00128 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00118 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99745 * 5.58078 * 8 6 5 10 10 C 1.50703 * 109.47150 * 270.00213 * 9 8 6 11 11 H 1.08004 * 119.99725 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00241 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00619 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99937 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47084 * 89.99579 * 14 12 10 16 16 H 1.48493 * 109.47551 * 209.99831 * 14 12 10 17 17 H 1.48509 * 109.46883 * 329.99858 * 14 12 10 18 18 C 1.39917 * 120.00297 * 185.58851 * 8 6 5 19 19 C 1.38880 * 120.04625 * 236.08482 * 18 8 6 20 20 C 1.38110 * 119.95211 * 179.72563 * 19 18 8 21 21 C 1.38478 * 120.04662 * 0.25375 * 20 19 18 22 22 F 1.35099 * 119.95308 * 180.02562 * 21 20 19 23 23 C 1.38485 * 120.09524 * 359.97438 * 21 20 19 24 24 C 1.38107 * 120.04713 * 359.97438 * 23 21 20 25 25 H 1.08992 * 109.47154 * 300.00396 * 1 2 3 26 26 H 1.08999 * 109.46600 * 59.99890 * 1 2 3 27 27 H 1.08994 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99377 * 179.97438 * 2 1 3 29 29 H 1.08011 * 120.00238 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.00094 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.99412 * 359.97438 * 5 4 3 32 32 H 1.08995 * 109.47047 * 30.00492 * 9 8 6 33 33 H 1.08994 * 109.46898 * 150.00805 * 9 8 6 34 34 H 0.96995 * 120.00272 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.02250 * 359.97438 * 19 18 8 36 36 H 1.07994 * 119.97693 * 180.27386 * 20 19 18 37 37 H 1.08004 * 119.97235 * 180.02562 * 23 21 20 38 38 H 1.08002 * 120.01737 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.1553 0.0000 4 6 3.6374 1.1553 0.0006 5 6 4.3135 2.3261 0.0011 6 6 5.7757 2.3261 0.0011 7 8 6.3843 1.2718 0.0011 8 7 6.4496 3.4933 0.0021 9 6 5.7223 4.7589 0.1267 10 6 5.3532 5.2632 -1.2447 11 1 5.6321 4.6973 -2.1213 12 6 4.6586 6.4464 -1.3802 13 7 4.3369 6.8869 -2.5770 14 14 4.1756 7.4249 0.1360 15 1 5.2570 8.3863 0.4700 16 1 2.9186 8.1680 -0.1340 17 1 3.9672 6.4981 1.2776 18 6 7.8438 3.4962 -0.1159 19 6 8.6222 4.1182 0.8516 20 6 9.9985 4.1151 0.7362 21 6 10.6021 3.4969 -0.3460 22 9 11.9485 3.4945 -0.4568 23 6 9.8276 2.8802 -1.3144 24 6 8.4510 2.8801 -1.2023 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.0470 -0.9354 0.0004 29 1 1.6341 2.0907 -0.0004 30 1 4.1774 0.2200 0.0014 31 1 3.7734 3.2615 0.0007 32 1 4.8164 4.6013 0.7118 33 1 6.3542 5.4934 0.6259 34 1 3.8486 7.7195 -2.6723 35 1 8.1518 4.6005 1.6957 36 1 10.6043 4.5947 1.4905 37 1 10.3004 2.3983 -2.1574 38 1 7.8475 2.3986 -1.9575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073753755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:12 Heat of formation + Delta-G solvation = -35.559890 kcal Electronic energy + Delta-G solvation = -21884.257843 eV Core-core repulsion = 18413.411063 eV Total energy + Delta-G solvation = -3470.846780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.87813 -41.54976 -39.39297 -36.87222 -36.64688 -34.59127 -33.27624 -32.20208 -31.06988 -29.48886 -28.04992 -25.01116 -24.51019 -23.75895 -22.29805 -20.61854 -19.84336 -19.11772 -18.79466 -18.35564 -17.83487 -17.25145 -16.56069 -16.28304 -15.85224 -15.68646 -15.40554 -15.23284 -14.63803 -14.57286 -14.24287 -14.21564 -14.10769 -13.88490 -13.72411 -13.31857 -13.12666 -12.92683 -12.60272 -12.49549 -12.19917 -12.11411 -12.01254 -11.75574 -11.72458 -11.04662 -10.79148 -10.35314 -10.12809 -9.33319 -9.00450 -8.30810 -6.39396 -0.25327 0.13128 0.22568 1.40675 1.40849 1.50860 1.58427 2.06349 2.33487 2.40673 2.61988 3.02947 3.24288 3.64236 3.76336 3.87897 4.03132 4.20507 4.22022 4.32753 4.35801 4.38369 4.57625 4.73241 4.76118 4.81684 4.85532 4.87686 5.02146 5.07271 5.11040 5.19808 5.31688 5.38896 5.48278 5.61817 5.67829 5.82707 5.97690 6.12772 6.43348 6.65205 7.13802 7.26622 8.85613 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.005431 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.813385 B = 5154.621646 C = 7170.310264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.175 4.175 4 C -0.021 4.021 5 C -0.224 4.224 6 C 0.548 3.452 7 O -0.582 6.582 8 N -0.552 5.552 9 C 0.216 3.784 10 C -0.541 4.541 11 H 0.027 0.973 12 C 0.021 3.979 13 N -0.941 5.941 14 Si 0.939 3.061 15 H -0.264 1.264 16 H -0.283 1.283 17 H -0.232 1.232 18 C 0.134 3.866 19 C -0.108 4.108 20 C -0.128 4.128 21 C 0.075 3.925 22 F -0.140 7.140 23 C -0.138 4.138 24 C -0.103 4.103 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.153 0.847 36 H 0.171 0.829 37 H 0.154 0.846 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -8.276 9.285 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 C -0.193 4.193 4 C -0.041 4.041 5 C -0.245 4.245 6 C 0.343 3.657 7 O -0.465 6.465 8 N -0.276 5.276 9 C 0.096 3.904 10 C -0.579 4.579 11 H 0.045 0.955 12 C -0.178 4.178 13 N -0.580 5.580 14 Si 0.761 3.239 15 H -0.189 1.189 16 H -0.208 1.208 17 H -0.155 1.155 18 C 0.042 3.958 19 C -0.128 4.128 20 C -0.147 4.147 21 C 0.055 3.945 22 F -0.119 7.119 23 C -0.157 4.157 24 C -0.123 4.123 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.171 0.829 36 H 0.188 0.812 37 H 0.172 0.828 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.143 -8.648 9.195 12.624 hybrid contribution 0.001 0.824 -0.417 0.924 sum -0.142 -7.823 8.778 11.759 Atomic orbital electron populations 1.20994 0.90868 1.03948 1.02950 1.24024 0.97676 0.97379 0.92916 1.21829 0.91633 0.99839 1.06012 1.22630 0.94497 0.97249 0.89726 1.22995 0.91828 1.00562 1.09071 1.18750 0.89415 0.82404 0.75167 1.90715 1.71383 1.31577 1.52875 1.45520 1.04234 1.07994 1.69900 1.19871 0.93161 0.80887 0.96506 1.21400 1.36875 1.07387 0.92233 0.95466 1.25776 0.94794 0.97945 0.99292 1.70049 1.40452 1.22623 1.24904 0.85841 0.78413 0.79652 0.79981 1.18908 1.20817 1.15500 1.18044 0.83499 0.99403 0.94813 1.21194 0.93138 1.00254 0.98210 1.21213 0.94445 1.00690 0.98312 1.17698 0.76904 1.02302 0.97556 1.91472 1.29205 1.95073 1.96165 1.21100 0.92713 1.01560 1.00301 1.20989 0.94714 1.00046 0.96536 0.90315 0.90857 0.90012 0.85734 0.86091 0.85766 0.84757 0.92330 0.93161 0.92177 0.82946 0.81167 0.82783 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 10.19 71.24 0.73 -1.13 16 2 C -0.10 -1.96 9.98 24.59 0.25 -1.71 16 3 C -0.18 -4.40 9.48 23.28 0.22 -4.18 16 4 C -0.02 -0.66 9.37 23.67 0.22 -0.44 16 5 C -0.22 -8.41 8.85 23.64 0.21 -8.20 16 6 C 0.55 23.34 7.37 86.32 0.64 23.98 16 7 O -0.58 -26.51 15.59 -4.46 -0.07 -26.58 16 8 N -0.55 -23.45 2.56 -640.18 -1.64 -25.09 16 9 C 0.22 9.37 3.75 85.63 0.32 9.69 16 10 C -0.54 -28.97 9.85 25.60 0.25 -28.72 16 11 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 12 C 0.02 1.13 5.47 84.65 0.46 1.59 16 13 N -0.94 -55.70 13.96 21.44 0.30 -55.40 16 14 Si 0.94 38.99 27.47 68.60 1.88 40.88 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 17 H -0.23 -8.43 6.54 99.48 0.65 -7.78 16 18 C 0.13 5.33 5.18 38.16 0.20 5.52 16 19 C -0.11 -3.49 9.30 22.39 0.21 -3.29 16 20 C -0.13 -3.54 10.02 22.30 0.22 -3.32 16 21 C 0.07 2.25 7.30 22.39 0.16 2.41 16 22 F -0.14 -3.98 17.26 44.97 0.78 -3.20 16 23 C -0.14 -4.44 10.02 22.30 0.22 -4.22 16 24 C -0.10 -3.99 8.93 22.39 0.20 -3.79 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.12 2.10 8.05 -2.91 -0.02 2.07 16 29 H 0.12 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.12 3.83 7.52 -2.91 -0.02 3.81 16 31 H 0.13 5.15 6.30 -2.91 -0.02 5.13 16 32 H 0.06 2.36 5.41 -2.39 -0.01 2.35 16 33 H 0.05 2.03 6.73 -2.39 -0.02 2.01 16 34 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.15 4.21 7.78 -2.91 -0.02 4.19 16 36 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 38 H 0.11 4.62 8.04 -2.91 -0.02 4.60 16 Total: -1.00 -67.36 337.47 6.76 -60.59 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 1.00 Total: 24.60 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 4.51 Total: -15.80 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -1.34 Total: -80.49 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.07 Total: -26.58 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.88 Total: 40.88 kcal Total: -67.36 6.76 -60.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073753755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.032 kcal (2) G-P(sol) polarization free energy of solvation -67.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds