Wall clock time and date at job start Tue Mar 31 2020 05:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47367 * 120.00335 * 2 1 3 5 5 H 1.08999 * 109.62839 * 59.60725 * 4 2 1 6 6 C 1.53249 * 109.62875 * 180.02562 * 4 2 1 7 7 N 1.46470 * 109.85693 * 181.90817 * 6 4 2 8 8 C 1.46899 * 111.00179 * 162.23556 * 7 6 4 9 9 C 1.52997 * 109.47320 * 66.14570 * 8 7 6 10 10 C 1.53002 * 109.47241 * 182.44066 * 9 8 7 11 11 S 1.81003 * 109.47302 * 179.97438 * 10 9 8 12 12 C 1.76198 * 100.00000 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99731 * 0.02562 * 12 11 10 14 14 C 1.38795 * 119.99866 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00159 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99868 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47140 * 180.02562 * 16 14 12 18 18 H 1.48506 * 109.46838 * 299.99516 * 16 14 12 19 19 H 1.48497 * 109.47409 * 59.99720 * 16 14 12 20 20 C 1.46478 * 112.55684 * 287.33752 * 7 6 4 21 21 C 1.53246 * 109.85524 * 72.66151 * 20 7 6 22 22 S 1.81899 * 109.79215 * 299.10998 * 4 2 1 23 23 H 1.09005 * 109.46946 * 299.99509 * 1 2 3 24 24 H 1.08991 * 109.47402 * 59.99728 * 1 2 3 25 25 H 1.09001 * 109.46890 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46652 * 240.00325 * 2 1 3 27 27 H 1.08994 * 109.47309 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47144 * 300.00508 * 3 2 1 29 29 H 1.09003 * 109.46967 * 59.99892 * 3 2 1 30 30 H 1.08993 * 109.40810 * 61.78705 * 6 4 2 31 31 H 1.08997 * 109.34372 * 301.98069 * 6 4 2 32 32 H 1.09002 * 109.46589 * 306.14559 * 8 7 6 33 33 H 1.09002 * 109.47289 * 186.14817 * 8 7 6 34 34 H 1.08994 * 109.47331 * 62.44230 * 9 8 7 35 35 H 1.09003 * 109.47093 * 302.43563 * 9 8 7 36 36 H 1.09007 * 109.47076 * 59.99694 * 10 9 8 37 37 H 1.09001 * 109.47178 * 299.99811 * 10 9 8 38 38 H 0.97003 * 119.99786 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.40429 * 192.77460 * 20 7 6 40 40 H 1.08993 * 109.40451 * 312.54144 * 20 7 6 41 41 H 1.09006 * 109.62895 * 178.29391 * 21 20 7 42 42 H 1.08997 * 109.80230 * 57.79887 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6725 -1.7474 1.2552 6 6 3.5726 -0.7228 1.2531 7 7 4.0664 -1.4517 2.4236 8 6 5.4736 -1.8355 2.2498 9 6 6.3444 -0.5780 2.2127 10 6 7.8023 -0.9742 1.9708 11 16 8.8324 0.5135 1.9262 12 6 10.4112 -0.2159 1.6435 13 1 10.5023 -1.2883 1.5534 14 6 11.5378 0.5877 1.5366 15 7 11.4267 1.8948 1.6459 16 14 13.2116 -0.1856 1.2362 17 1 14.2432 0.8801 1.1627 18 1 13.5361 -1.1119 2.3507 19 1 13.1861 -0.9397 -0.0428 20 6 3.8756 -0.7073 3.6707 21 6 2.3916 -0.7034 4.0527 22 16 1.4604 0.1445 2.7402 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.9357 0.3043 1.2863 31 1 3.9355 -1.2061 0.3460 32 1 5.5877 -2.3841 1.3148 33 1 5.7834 -2.4676 3.0820 34 1 6.2640 -0.0522 3.1640 35 1 6.0067 0.0741 1.4072 36 1 7.8829 -1.5002 1.0194 37 1 8.1401 -1.6264 2.7762 38 1 12.2141 2.4564 1.5708 39 1 4.4530 -1.1789 4.4658 40 1 4.2177 0.3187 3.5359 41 1 2.2578 -0.1746 4.9965 42 1 2.0334 -1.7279 4.1530 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:49 Heat of formation + Delta-G solvation = -25.107997 kcal Electronic energy + Delta-G solvation = -18943.107614 eV Core-core repulsion = 16174.371190 eV Total energy + Delta-G solvation = -2768.736424 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.96188 -36.46874 -33.24676 -32.44743 -30.77954 -29.13412 -27.34620 -25.72996 -24.78238 -23.79306 -22.32942 -20.43377 -20.12300 -17.50647 -16.66667 -16.02477 -15.78373 -15.35924 -14.82551 -14.62357 -14.48860 -14.08397 -13.84000 -13.58634 -13.19870 -12.97958 -12.72812 -12.52345 -12.20165 -12.01564 -11.92659 -11.78621 -11.49116 -11.30645 -11.16976 -11.06415 -10.97461 -10.82869 -10.72498 -10.64872 -10.35708 -9.75502 -9.66255 -9.07507 -8.45001 -8.25064 -7.69995 -6.56396 -6.24937 -3.95908 1.66054 2.43162 3.19834 3.21431 3.26163 3.53169 3.68494 4.20154 4.52543 4.56676 4.77307 4.80451 4.98872 5.05699 5.08276 5.11227 5.21279 5.25292 5.28851 5.40265 5.45983 5.52711 5.54537 5.57966 5.63406 5.68370 5.75072 5.79038 5.82610 5.85284 5.93666 6.01616 6.11923 6.23411 6.26540 6.44427 6.65594 6.91141 6.96425 7.57878 8.34059 9.21191 10.83191 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.003069 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.674003 B = 9122.530436 C = 9483.161978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.154 4.154 4 C -0.036 4.036 5 H 0.092 0.908 6 C 0.054 3.946 7 N -0.550 5.550 8 C 0.063 3.937 9 C -0.133 4.133 10 C -0.109 4.109 11 S -0.136 6.136 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.283 1.283 18 H -0.274 1.274 19 H -0.274 1.274 20 C 0.053 3.947 21 C -0.080 4.080 22 S -0.263 6.263 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.268 0.732 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.745 -5.487 0.080 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 C -0.212 4.212 4 C -0.165 4.165 5 H 0.110 0.890 6 C -0.075 4.075 7 N -0.273 5.273 8 C -0.066 4.066 9 C -0.173 4.173 10 C -0.259 4.259 11 S 0.093 5.907 12 C -0.665 4.665 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.745 3.255 17 H -0.208 1.208 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.077 4.077 21 C -0.229 4.229 22 S -0.036 6.036 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.957 -3.798 0.351 22.286 hybrid contribution 2.824 -2.039 -0.431 3.510 sum -19.133 -5.837 -0.080 20.004 Atomic orbital electron populations 1.21867 0.94506 1.01943 1.02192 1.20964 0.96317 0.96843 0.95554 1.21982 1.01641 0.95246 1.02314 1.23373 0.97509 1.01376 0.94218 0.88959 1.22381 0.92859 0.98449 0.93854 1.61426 1.19711 1.44172 1.02037 1.22286 0.84590 0.96936 1.02742 1.21945 0.94634 0.98218 1.02491 1.23182 0.96937 1.03111 1.02650 1.84639 1.03120 1.08351 1.94635 1.22641 0.91876 0.95120 1.56891 0.91012 1.25018 0.99245 0.94808 0.94693 1.70015 1.30391 1.03285 1.46855 0.86225 0.81604 0.78742 0.78979 1.20788 1.19922 1.19910 1.22214 0.94710 0.98138 0.92600 1.23539 0.96941 1.03510 0.98884 1.86770 1.60860 1.52744 1.03243 0.91697 0.92520 0.92655 0.90086 0.92080 0.92671 0.91330 0.92367 0.89870 0.90580 0.90499 0.91522 0.91640 0.92167 0.92126 0.92233 0.89696 0.92753 0.87767 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.97 37.16 0.33 -0.88 16 2 C -0.08 -0.69 2.76 -90.62 -0.25 -0.94 16 3 C -0.15 -1.48 8.60 37.16 0.32 -1.16 16 4 C -0.04 -0.36 2.56 -26.60 -0.07 -0.43 16 5 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 6 C 0.05 0.60 3.56 -3.93 -0.01 0.59 16 7 N -0.55 -6.39 4.59 -235.04 -1.08 -7.46 16 8 C 0.06 0.80 5.23 -3.83 -0.02 0.78 16 9 C -0.13 -2.08 4.62 -26.73 -0.12 -2.21 16 10 C -0.11 -2.16 5.67 37.16 0.21 -1.95 16 11 S -0.14 -3.54 21.44 -107.50 -2.30 -5.84 16 12 C -0.52 -14.83 9.50 30.94 0.29 -14.53 16 13 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 16 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 C 0.05 0.58 4.45 -3.93 -0.02 0.57 16 21 C -0.08 -0.79 6.69 37.28 0.25 -0.54 16 22 S -0.26 -2.85 18.89 -107.50 -2.03 -4.88 16 23 H 0.06 0.59 6.98 -51.93 -0.36 0.23 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.63 6.48 -51.93 -0.34 0.30 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.72 6.90 -51.93 -0.36 0.36 16 30 H 0.06 0.73 5.51 -51.93 -0.29 0.44 16 31 H 0.08 0.90 7.82 -51.93 -0.41 0.50 16 32 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 33 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.07 1.08 6.95 -51.93 -0.36 0.72 16 35 H 0.06 1.06 6.86 -51.93 -0.36 0.71 16 36 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 40 H 0.05 0.68 7.16 -51.93 -0.37 0.30 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -30.22 345.08 -11.11 -41.34 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.43 Total: -0.77 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 0.82 Total: -18.77 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: -0.34 Total: -32.76 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -6.38 SS G_CDS: -4.34 Total: -10.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.22 -11.11 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.229 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds