Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47367 * 120.00335 * 2 1 3 5 5 H 1.08999 * 109.62839 * 59.60725 * 4 2 1 6 6 C 1.53249 * 109.62875 * 180.02562 * 4 2 1 7 7 N 1.46470 * 109.85693 * 181.90817 * 6 4 2 8 8 C 1.46899 * 111.00179 * 162.23556 * 7 6 4 9 9 C 1.52997 * 109.47320 * 66.14570 * 8 7 6 10 10 C 1.53002 * 109.47241 * 182.44066 * 9 8 7 11 11 S 1.81003 * 109.47302 * 179.97438 * 10 9 8 12 12 C 1.76198 * 100.00000 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99731 * 0.02562 * 12 11 10 14 14 C 1.38795 * 119.99866 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00159 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99868 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47140 * 180.02562 * 16 14 12 18 18 H 1.48506 * 109.46838 * 299.99516 * 16 14 12 19 19 H 1.48497 * 109.47409 * 59.99720 * 16 14 12 20 20 C 1.46478 * 112.55684 * 287.33752 * 7 6 4 21 21 C 1.53246 * 109.85524 * 72.66151 * 20 7 6 22 22 S 1.81899 * 109.79215 * 299.10998 * 4 2 1 23 23 H 1.09005 * 109.46946 * 299.99509 * 1 2 3 24 24 H 1.08991 * 109.47402 * 59.99728 * 1 2 3 25 25 H 1.09001 * 109.46890 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46652 * 240.00325 * 2 1 3 27 27 H 1.08994 * 109.47309 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47144 * 300.00508 * 3 2 1 29 29 H 1.09003 * 109.46967 * 59.99892 * 3 2 1 30 30 H 1.08993 * 109.40810 * 61.78705 * 6 4 2 31 31 H 1.08997 * 109.34372 * 301.98069 * 6 4 2 32 32 H 1.09002 * 109.46589 * 306.14559 * 8 7 6 33 33 H 1.09002 * 109.47289 * 186.14817 * 8 7 6 34 34 H 1.08994 * 109.47331 * 62.44230 * 9 8 7 35 35 H 1.09003 * 109.47093 * 302.43563 * 9 8 7 36 36 H 1.09007 * 109.47076 * 59.99694 * 10 9 8 37 37 H 1.09001 * 109.47178 * 299.99811 * 10 9 8 38 38 H 0.97003 * 119.99786 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.40429 * 192.77460 * 20 7 6 40 40 H 1.08993 * 109.40451 * 312.54144 * 20 7 6 41 41 H 1.09006 * 109.62895 * 178.29391 * 21 20 7 42 42 H 1.08997 * 109.80230 * 57.79887 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6725 -1.7474 1.2552 6 6 3.5726 -0.7228 1.2531 7 7 4.0664 -1.4517 2.4236 8 6 5.4736 -1.8355 2.2498 9 6 6.3444 -0.5780 2.2127 10 6 7.8023 -0.9742 1.9708 11 16 8.8324 0.5135 1.9262 12 6 10.4112 -0.2159 1.6435 13 1 10.5023 -1.2883 1.5534 14 6 11.5378 0.5877 1.5366 15 7 11.4267 1.8948 1.6459 16 14 13.2116 -0.1856 1.2362 17 1 14.2432 0.8801 1.1627 18 1 13.5361 -1.1119 2.3507 19 1 13.1861 -0.9397 -0.0428 20 6 3.8756 -0.7073 3.6707 21 6 2.3916 -0.7034 4.0527 22 16 1.4604 0.1445 2.7402 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.9357 0.3043 1.2863 31 1 3.9355 -1.2061 0.3460 32 1 5.5877 -2.3841 1.3148 33 1 5.7834 -2.4676 3.0820 34 1 6.2640 -0.0522 3.1640 35 1 6.0067 0.0741 1.4072 36 1 7.8829 -1.5002 1.0194 37 1 8.1401 -1.6264 2.7762 38 1 12.2141 2.4564 1.5708 39 1 4.4530 -1.1789 4.4658 40 1 4.2177 0.3187 3.5359 41 1 2.2578 -0.1746 4.9965 42 1 2.0334 -1.7279 4.1530 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074991884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = -41.809235 kcal Electronic energy + Delta-G solvation = -18943.831834 eV Core-core repulsion = 16174.371190 eV Total energy + Delta-G solvation = -2769.460644 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.91738 -37.28490 -34.65846 -34.42531 -31.68137 -30.13914 -28.08359 -27.83648 -26.00158 -24.63278 -23.55794 -21.25850 -21.10982 -19.58391 -17.54873 -17.00769 -16.91159 -16.77284 -16.37494 -15.91188 -15.72555 -15.30486 -14.93777 -14.55076 -14.43292 -14.08844 -13.69137 -13.50539 -13.41351 -13.24975 -13.05062 -12.97891 -12.87114 -12.68139 -12.54250 -12.46711 -12.10808 -11.94552 -11.79575 -11.59656 -11.52236 -11.45424 -11.15038 -10.49909 -10.37648 -9.37676 -8.69688 -8.56157 -8.38982 -6.16033 0.84732 1.30047 1.39546 1.46507 1.62041 1.73489 2.26954 2.73627 2.95241 3.29319 3.70143 3.77354 3.90508 3.92621 4.03688 4.12846 4.17812 4.18906 4.33305 4.35805 4.48745 4.51032 4.60837 4.67723 4.70940 4.76677 4.80150 4.87054 4.89171 4.96565 5.02685 5.05276 5.08027 5.20802 5.25260 5.37540 5.41728 5.47001 5.91929 6.00773 6.16018 7.03055 8.70120 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.003069 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.674003 B = 9122.530436 C = 9483.161978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.152 4.152 4 C -0.025 4.025 5 H 0.095 0.905 6 C 0.054 3.946 7 N -0.545 5.545 8 C 0.074 3.926 9 C -0.119 4.119 10 C -0.084 4.084 11 S -0.205 6.205 12 C -0.538 4.538 13 H 0.074 0.926 14 C 0.015 3.985 15 N -0.908 5.908 16 Si 0.994 3.006 17 H -0.275 1.275 18 H -0.264 1.264 19 H -0.264 1.264 20 C 0.052 3.948 21 C -0.072 4.072 22 S -0.288 6.288 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.271 0.729 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.117 0.883 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.128 -7.283 -0.196 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 C -0.209 4.209 4 C -0.154 4.154 5 H 0.113 0.887 6 C -0.075 4.075 7 N -0.267 5.267 8 C -0.055 4.055 9 C -0.159 4.159 10 C -0.233 4.233 11 S 0.023 5.977 12 C -0.686 4.686 13 H 0.092 0.908 14 C -0.190 4.190 15 N -0.545 5.545 16 Si 0.815 3.185 17 H -0.200 1.200 18 H -0.189 1.189 19 H -0.188 1.188 20 C -0.077 4.077 21 C -0.220 4.220 22 S -0.061 6.061 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.135 0.865 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.362 -5.596 0.078 23.052 hybrid contribution 2.852 -1.472 -0.330 3.227 sum -19.510 -7.068 -0.252 20.752 Atomic orbital electron populations 1.21820 0.93740 1.02363 1.02123 1.20992 0.96900 0.96193 0.95420 1.21943 1.00814 0.95925 1.02226 1.23341 0.96476 1.01441 0.94189 0.88675 1.22397 0.93722 0.97482 0.93925 1.61508 1.18586 1.44242 1.02397 1.22197 0.84479 0.95166 1.03700 1.21857 0.92483 0.99763 1.01781 1.23121 0.97640 0.99590 1.02988 1.84683 1.04465 1.13702 1.94816 1.23006 0.93024 0.95392 1.57184 0.90819 1.26084 1.03642 0.95265 0.94020 1.70156 1.31719 1.04881 1.47714 0.85072 0.76055 0.78003 0.79338 1.20020 1.18862 1.18834 1.22243 0.95761 0.97115 0.92612 1.23536 0.95667 1.03925 0.98918 1.86907 1.61221 1.53575 1.04411 0.92808 0.91537 0.91975 0.88931 0.93270 0.91681 0.92486 0.94001 0.89288 0.89711 0.89459 0.92146 0.92454 0.91784 0.91687 0.91971 0.88839 0.94512 0.86516 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.97 71.98 0.65 -1.48 16 2 C -0.08 -1.24 2.76 -10.79 -0.03 -1.27 16 3 C -0.15 -2.84 8.60 71.98 0.62 -2.22 16 4 C -0.03 -0.48 2.56 30.68 0.08 -0.40 16 5 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 6 C 0.05 1.15 3.56 86.47 0.31 1.45 16 7 N -0.54 -11.74 4.59 -897.53 -4.12 -15.85 16 8 C 0.07 1.72 5.23 86.30 0.45 2.18 16 9 C -0.12 -3.64 4.62 30.59 0.14 -3.50 16 10 C -0.08 -3.27 5.67 71.98 0.41 -2.86 16 11 S -0.21 -10.92 21.44 -56.49 -1.21 -12.14 16 12 C -0.54 -31.09 9.50 67.95 0.65 -30.44 16 13 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 14 C 0.01 0.84 5.49 84.86 0.47 1.31 16 15 N -0.91 -55.10 13.22 21.65 0.29 -54.82 16 16 Si 0.99 43.80 29.55 68.60 2.03 45.82 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 C 0.05 1.09 4.45 86.47 0.38 1.47 16 21 C -0.07 -1.31 6.69 72.06 0.48 -0.83 16 22 S -0.29 -5.99 18.89 -56.49 -1.07 -7.05 16 23 H 0.05 0.93 6.98 -2.38 -0.02 0.91 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.02 6.48 -2.39 -0.02 1.01 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.19 6.90 -2.39 -0.02 1.18 16 30 H 0.04 1.04 5.51 -2.39 -0.01 1.03 16 31 H 0.09 1.79 7.82 -2.39 -0.02 1.77 16 32 H 0.08 1.88 7.93 -2.39 -0.02 1.86 16 33 H 0.09 1.91 8.07 -2.39 -0.02 1.89 16 34 H 0.06 1.94 6.95 -2.39 -0.02 1.92 16 35 H 0.06 1.86 6.86 -2.39 -0.02 1.84 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.09 1.80 7.91 -2.39 -0.02 1.78 16 40 H 0.04 0.91 7.16 -2.39 -0.02 0.89 16 41 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.19 345.08 1.49 -63.71 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.96 Total: 16.92 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 4.60 Total: -36.59 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -3.83 Total: -70.67 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -16.91 SS G_CDS: -2.28 Total: -19.19 kcal Total: -65.19 1.49 -63.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.899 kcal (2) G-P(sol) polarization free energy of solvation -65.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds