Wall clock time and date at job start Tue Mar 31 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48503 * 109.47072 * 270.00195 * 3 2 1 5 5 H 1.48500 * 109.47071 * 30.00324 * 3 2 1 6 6 H 1.48498 * 109.46909 * 150.00379 * 3 2 1 7 7 C 1.37876 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99687 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.47844 * 111.00162 * 74.82124 * 10 9 7 12 12 C 1.54909 * 104.79528 * 146.36088 * 11 10 9 13 13 C 1.55135 * 101.65663 * 322.93362 * 12 11 10 14 14 C 1.47442 * 110.99806 * 195.66892 * 10 9 7 15 15 H 1.09001 * 109.89008 * 117.17680 * 14 10 9 16 16 C 1.50695 * 109.89353 * 356.14421 * 14 10 9 17 17 C 1.38255 * 119.94536 * 295.31497 * 16 14 10 18 18 C 1.38190 * 120.11612 * 180.30779 * 17 16 14 19 19 C 1.38713 * 120.06470 * 359.41703 * 18 17 16 20 20 C 1.38973 * 119.81476 * 0.22015 * 19 18 17 21 21 C 1.38190 * 119.94304 * 115.02072 * 16 14 10 22 22 O 1.36108 * 120.77798 * 180.21488 * 20 19 18 23 23 C 1.43186 * 116.69956 * 342.71306 * 22 20 19 24 24 C 1.53466 * 108.23055 * 46.25399 * 23 22 20 25 25 O 1.36102 * 119.39450 * 180.02562 * 19 18 17 26 26 H 0.96997 * 120.00871 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47336 * 60.00372 * 9 7 2 28 28 H 1.09002 * 109.47046 * 299.99639 * 9 7 2 29 29 H 1.08990 * 110.37817 * 265.19662 * 11 10 9 30 30 H 1.09008 * 110.37304 * 27.54023 * 11 10 9 31 31 H 1.09001 * 110.98607 * 81.02468 * 12 11 10 32 32 H 1.08998 * 110.99148 * 204.80344 * 12 11 10 33 33 H 1.08996 * 110.70615 * 277.26943 * 13 12 11 34 34 H 1.09000 * 110.70674 * 154.03142 * 13 12 11 35 35 H 1.08001 * 119.94454 * 0.04144 * 17 16 14 36 36 H 1.07997 * 119.97070 * 179.68934 * 18 17 16 37 37 H 1.07998 * 119.97062 * 0.06190 * 21 16 14 38 38 H 1.09007 * 109.70703 * 286.57432 * 23 22 20 39 39 H 1.08992 * 109.74642 * 165.95979 * 23 22 20 40 40 H 1.09001 * 109.70522 * 180.57343 * 24 23 22 41 41 H 1.08993 * 109.74412 * 59.97300 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.8248 -3.7835 1.3315 12 6 3.0494 -5.3096 1.4739 13 6 1.7854 -5.8788 0.7774 14 6 1.5418 -4.8785 -0.3723 15 1 1.9688 -5.2633 -1.2984 16 6 0.0628 -4.6482 -0.5467 17 6 -0.7096 -4.2729 0.5368 18 6 -2.0673 -4.0669 0.3822 19 6 -2.6568 -4.2247 -0.8635 20 6 -1.8789 -4.5947 -1.9541 21 6 -0.5180 -4.8067 -1.7905 22 8 -2.4361 -4.7508 -3.1861 23 6 -3.8598 -4.8957 -3.2346 24 6 -4.4827 -3.8218 -2.3324 25 8 -3.9950 -4.0179 -1.0003 26 1 -0.4851 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8897 29 1 3.7763 -3.2540 1.3773 30 1 2.1520 -3.4248 2.1106 31 1 3.9554 -5.6211 0.9539 32 1 3.0834 -5.6031 2.5231 33 1 0.9391 -5.8901 1.4642 34 1 1.9782 -6.8773 0.3852 35 1 -0.2520 -4.1445 1.5065 36 1 -2.6694 -3.7786 1.2312 37 1 0.0882 -5.0964 -2.6361 38 1 -4.1409 -5.8858 -2.8756 39 1 -4.2087 -4.7632 -4.2586 40 1 -5.5685 -3.9170 -2.3437 41 1 -4.1969 -2.8317 -2.6873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085572112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:04 Heat of formation + Delta-G solvation = -33.221373 kcal Electronic energy + Delta-G solvation = -23789.074019 eV Core-core repulsion = 20441.788950 eV Total energy + Delta-G solvation = -3347.285069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97748 -39.28415 -36.94813 -36.49586 -33.01289 -31.41327 -30.73008 -30.52348 -28.89340 -26.76610 -26.21739 -24.44912 -22.64224 -22.29086 -21.10643 -20.30768 -19.20367 -18.17534 -16.99121 -16.74793 -16.35722 -15.23725 -15.19450 -14.89569 -14.73522 -14.19644 -14.15040 -13.86436 -13.61577 -13.47669 -13.18388 -12.85274 -12.42109 -12.08446 -11.76455 -11.64518 -11.37407 -11.02247 -10.98765 -10.90751 -10.62012 -10.57709 -10.37938 -10.35621 -10.16412 -10.07442 -9.70808 -9.10788 -8.36140 -8.16353 -7.50397 -7.16053 -5.93557 -3.94728 1.73647 1.80772 3.27397 3.36023 3.41764 3.45337 3.45571 4.12724 4.37879 4.48981 4.87358 4.94743 4.98515 5.05025 5.10017 5.20718 5.29318 5.38567 5.44698 5.52372 5.54227 5.66093 5.79466 5.84440 5.96734 6.02695 6.16752 6.25718 6.29103 6.50284 6.54526 6.59559 6.67037 6.70648 7.00627 7.12394 7.20198 7.29734 7.41449 7.76319 7.88528 8.14756 8.26408 8.61870 9.12822 9.68339 11.15846 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.006428 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.459958 B = 4354.626898 C = 5877.782363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.185 3.815 10 N -0.517 5.517 11 C 0.053 3.947 12 C -0.132 4.132 13 C -0.134 4.134 14 C 0.111 3.889 15 H 0.082 0.918 16 C -0.072 4.072 17 C -0.086 4.086 18 C -0.106 4.106 19 C 0.044 3.956 20 C 0.045 3.955 21 C -0.105 4.105 22 O -0.310 6.310 23 C 0.023 3.977 24 C 0.021 3.979 25 O -0.311 6.311 26 H 0.259 0.741 27 H 0.036 0.964 28 H 0.004 0.996 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 -12.555 -1.733 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.060 3.940 10 N -0.241 5.241 11 C -0.075 4.075 12 C -0.170 4.170 13 C -0.172 4.172 14 C 0.002 3.998 15 H 0.100 0.900 16 C -0.073 4.073 17 C -0.105 4.105 18 C -0.124 4.124 19 C 0.000 4.000 20 C 0.001 3.999 21 C -0.125 4.125 22 O -0.225 6.225 23 C -0.053 4.053 24 C -0.055 4.055 25 O -0.226 6.226 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.022 0.978 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.793 -12.287 -2.136 13.751 hybrid contribution -0.534 1.092 0.329 1.260 sum -6.327 -11.195 -1.807 12.985 Atomic orbital electron populations 1.69976 1.05878 1.26442 1.51030 1.24967 0.94820 0.99072 0.95677 0.86572 0.79764 0.83458 0.78040 1.20771 1.21434 1.19915 1.21205 0.93468 0.90129 1.49688 0.92163 1.20207 0.90139 0.87123 0.96553 1.64021 1.31921 1.02539 1.25616 1.22929 0.99851 0.93650 0.91062 1.22758 0.97784 0.96740 0.99746 1.22909 0.98260 0.98556 0.97504 1.21481 0.87790 0.91944 0.98564 0.90040 1.19891 0.96116 0.98978 0.92345 1.20669 0.92075 0.98636 0.99111 1.20250 0.94639 1.02442 0.95094 1.18745 0.82990 1.03611 0.94703 1.18726 0.93414 1.03784 0.83976 1.20170 0.91318 1.03395 0.97577 1.86286 1.21285 1.89052 1.25853 1.23526 0.80318 0.99128 1.02345 1.23554 1.00262 0.99418 0.82282 1.86263 1.20010 1.88072 1.28251 0.93154 0.94609 0.97796 0.90920 0.94044 0.91240 0.91670 0.91324 0.91441 0.85641 0.85358 0.85270 0.91013 0.86624 0.86662 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.48 8.98 -34.44 -0.31 -14.79 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.18 4.79 3.19 -4.97 -0.02 4.77 16 10 N -0.52 -11.17 5.11 -226.15 -1.16 -12.33 16 11 C 0.05 1.00 6.35 -2.30 -0.01 0.99 16 12 C -0.13 -1.92 7.08 -24.59 -0.17 -2.10 16 13 C -0.13 -1.97 6.33 -24.90 -0.16 -2.12 16 14 C 0.11 2.00 3.64 -67.87 -0.25 1.75 16 15 H 0.08 1.41 7.91 -51.93 -0.41 1.00 16 16 C -0.07 -1.36 2.99 -104.64 -0.31 -1.67 16 17 C -0.09 -1.65 6.31 -39.59 -0.25 -1.90 16 18 C -0.11 -1.99 9.96 -39.42 -0.39 -2.38 16 19 C 0.04 0.82 6.49 -39.13 -0.25 0.57 16 20 C 0.05 0.84 6.49 -39.14 -0.25 0.59 16 21 C -0.11 -1.96 9.45 -39.43 -0.37 -2.34 16 22 O -0.31 -5.13 10.42 -32.87 -0.34 -5.47 16 23 C 0.02 0.27 7.26 37.40 0.27 0.54 16 24 C 0.02 0.26 7.26 37.40 0.27 0.53 16 25 O -0.31 -5.22 10.42 -32.85 -0.34 -5.56 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.04 1.03 6.47 -51.93 -0.34 0.69 16 28 H 0.00 0.12 5.34 -51.93 -0.28 -0.16 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.04 0.82 7.53 -51.92 -0.39 0.43 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.00 6.59 -51.93 -0.34 0.65 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.13 2.35 6.75 -52.49 -0.35 1.99 16 36 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.13 2.21 7.96 -52.49 -0.42 1.79 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -32.67 325.20 -9.41 -42.08 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.88 Total: 1.51 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.31 Total: -16.05 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.42 Total: -38.50 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.68 Total: -11.03 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.67 -9.41 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085572112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.864 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds