Wall clock time and date at job start Tue Mar 31 2020 06:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48503 * 109.47072 * 270.00195 * 3 2 1 5 5 H 1.48500 * 109.47071 * 30.00324 * 3 2 1 6 6 H 1.48498 * 109.46909 * 150.00379 * 3 2 1 7 7 C 1.37876 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99687 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.47844 * 111.00162 * 74.82124 * 10 9 7 12 12 C 1.54909 * 104.79528 * 146.36088 * 11 10 9 13 13 C 1.55135 * 101.65663 * 322.93362 * 12 11 10 14 14 C 1.47442 * 110.99806 * 195.66892 * 10 9 7 15 15 H 1.09001 * 109.89008 * 117.17680 * 14 10 9 16 16 C 1.50695 * 109.89353 * 356.14421 * 14 10 9 17 17 C 1.38255 * 119.94536 * 295.31497 * 16 14 10 18 18 C 1.38190 * 120.11612 * 180.30779 * 17 16 14 19 19 C 1.38713 * 120.06470 * 359.41703 * 18 17 16 20 20 C 1.38973 * 119.81476 * 0.22015 * 19 18 17 21 21 C 1.38190 * 119.94304 * 115.02072 * 16 14 10 22 22 O 1.36108 * 120.77798 * 180.21488 * 20 19 18 23 23 C 1.43186 * 116.69956 * 342.71306 * 22 20 19 24 24 C 1.53466 * 108.23055 * 46.25399 * 23 22 20 25 25 O 1.36102 * 119.39450 * 180.02562 * 19 18 17 26 26 H 0.96997 * 120.00871 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47336 * 60.00372 * 9 7 2 28 28 H 1.09002 * 109.47046 * 299.99639 * 9 7 2 29 29 H 1.08990 * 110.37817 * 265.19662 * 11 10 9 30 30 H 1.09008 * 110.37304 * 27.54023 * 11 10 9 31 31 H 1.09001 * 110.98607 * 81.02468 * 12 11 10 32 32 H 1.08998 * 110.99148 * 204.80344 * 12 11 10 33 33 H 1.08996 * 110.70615 * 277.26943 * 13 12 11 34 34 H 1.09000 * 110.70674 * 154.03142 * 13 12 11 35 35 H 1.08001 * 119.94454 * 0.04144 * 17 16 14 36 36 H 1.07997 * 119.97070 * 179.68934 * 18 17 16 37 37 H 1.07998 * 119.97062 * 0.06190 * 21 16 14 38 38 H 1.09007 * 109.70703 * 286.57432 * 23 22 20 39 39 H 1.08992 * 109.74642 * 165.95979 * 23 22 20 40 40 H 1.09001 * 109.70522 * 180.57343 * 24 23 22 41 41 H 1.08993 * 109.74412 * 59.97300 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.8248 -3.7835 1.3315 12 6 3.0494 -5.3096 1.4739 13 6 1.7854 -5.8788 0.7774 14 6 1.5418 -4.8785 -0.3723 15 1 1.9688 -5.2633 -1.2984 16 6 0.0628 -4.6482 -0.5467 17 6 -0.7096 -4.2729 0.5368 18 6 -2.0673 -4.0669 0.3822 19 6 -2.6568 -4.2247 -0.8635 20 6 -1.8789 -4.5947 -1.9541 21 6 -0.5180 -4.8067 -1.7905 22 8 -2.4361 -4.7508 -3.1861 23 6 -3.8598 -4.8957 -3.2346 24 6 -4.4827 -3.8218 -2.3324 25 8 -3.9950 -4.0179 -1.0003 26 1 -0.4851 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8897 29 1 3.7763 -3.2540 1.3773 30 1 2.1520 -3.4248 2.1106 31 1 3.9554 -5.6211 0.9539 32 1 3.0834 -5.6031 2.5231 33 1 0.9391 -5.8901 1.4642 34 1 1.9782 -6.8773 0.3852 35 1 -0.2520 -4.1445 1.5065 36 1 -2.6694 -3.7786 1.2312 37 1 0.0882 -5.0964 -2.6361 38 1 -4.1409 -5.8858 -2.8756 39 1 -4.2087 -4.7632 -4.2586 40 1 -5.5685 -3.9170 -2.3437 41 1 -4.1969 -2.8317 -2.6873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085572112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:03 Heat of formation + Delta-G solvation = -54.842072 kcal Electronic energy + Delta-G solvation = -23790.011563 eV Core-core repulsion = 20441.788950 eV Total energy + Delta-G solvation = -3348.222613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.27464 -40.72161 -38.20509 -37.88827 -35.09284 -32.74422 -32.42606 -31.85510 -30.14962 -28.33660 -28.00561 -25.67615 -24.45091 -23.78489 -22.38563 -21.74287 -20.60773 -19.50284 -18.51301 -18.25003 -17.96658 -16.88639 -16.55931 -16.37175 -15.98456 -15.88845 -15.41765 -15.28940 -14.97013 -14.85104 -14.66729 -14.51293 -13.98630 -13.52853 -13.29007 -13.19329 -12.91964 -12.73613 -12.49556 -12.39038 -12.31025 -11.97741 -11.87141 -11.75171 -11.52674 -11.51585 -11.36011 -11.14379 -10.55646 -9.62306 -9.00900 -8.79442 -8.14300 -6.24325 0.30228 0.36036 1.38746 1.40130 1.51000 2.07427 2.29151 2.41153 2.69537 3.16426 3.33244 3.52681 3.69209 3.74349 3.92762 3.96227 4.00134 4.07373 4.16071 4.26766 4.38340 4.44526 4.53691 4.57577 4.65749 4.73441 4.86690 4.99648 5.06948 5.10968 5.13015 5.16837 5.19152 5.30999 5.38715 5.44078 5.62237 5.69168 5.70222 5.91740 6.14162 6.41847 6.44696 6.67099 6.92646 7.44291 8.94093 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.006428 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.459958 B = 4354.626898 C = 5877.782363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.210 3.790 10 N -0.532 5.532 11 C 0.047 3.953 12 C -0.116 4.116 13 C -0.125 4.125 14 C 0.105 3.895 15 H 0.090 0.910 16 C -0.080 4.080 17 C -0.097 4.097 18 C -0.122 4.122 19 C 0.035 3.965 20 C 0.041 3.959 21 C -0.120 4.120 22 O -0.325 6.325 23 C 0.017 3.983 24 C 0.011 3.989 25 O -0.324 6.324 26 H 0.260 0.740 27 H 0.002 0.998 28 H -0.015 1.015 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 -13.529 -2.190 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.084 3.916 10 N -0.256 5.256 11 C -0.080 4.080 12 C -0.154 4.154 13 C -0.163 4.163 14 C -0.003 4.003 15 H 0.108 0.892 16 C -0.081 4.081 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.010 4.010 20 C -0.004 4.004 21 C -0.139 4.139 22 O -0.240 6.240 23 C -0.058 4.058 24 C -0.063 4.063 25 O -0.239 6.239 26 H 0.069 0.931 27 H 0.020 0.980 28 H 0.003 0.997 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.105 0.895 39 H 0.173 0.827 40 H 0.178 0.822 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.626 -13.283 -2.598 14.658 hybrid contribution -0.692 1.374 0.386 1.586 sum -6.318 -11.909 -2.213 13.662 Atomic orbital electron populations 1.70112 1.07433 1.27339 1.51832 1.25827 0.95677 1.02766 0.95139 0.85507 0.78723 0.78897 0.78227 1.20256 1.20791 1.18887 1.21575 0.93439 0.91786 1.49690 0.92680 1.19696 0.89854 0.88077 0.93970 1.63870 1.31270 1.03091 1.27365 1.22970 0.98632 0.97218 0.89222 1.22708 0.98231 0.92736 1.01687 1.22887 0.98329 0.98981 0.96136 1.21617 0.87093 0.91229 1.00314 0.89209 1.20018 0.96594 0.99058 0.92430 1.20700 0.92429 0.99324 0.99147 1.20465 0.94903 1.02821 0.95884 1.18859 0.84050 1.03488 0.94619 1.18844 0.93561 1.03255 0.84733 1.20411 0.91914 1.03759 0.97864 1.86252 1.24174 1.88821 1.24742 1.23961 0.77639 0.99551 1.04603 1.23960 1.02729 0.99110 0.80533 1.86236 1.18791 1.87887 1.31012 0.93111 0.98010 0.99730 0.91667 0.95813 0.89685 0.89008 0.91348 0.88359 0.86106 0.84624 0.84226 0.89515 0.82701 0.82242 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.96 45.83 29.54 68.60 2.03 47.85 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.53 -30.90 8.98 25.60 0.23 -30.67 16 8 H 0.05 3.21 7.81 -2.91 -0.02 3.18 16 9 C 0.21 11.32 3.19 85.56 0.27 11.59 16 10 N -0.53 -23.34 5.11 -869.40 -4.44 -27.79 16 11 C 0.05 1.79 6.35 86.77 0.55 2.34 16 12 C -0.12 -3.09 7.08 31.98 0.23 -2.87 16 13 C -0.13 -3.43 6.33 31.78 0.20 -3.23 16 14 C 0.11 3.78 3.64 44.51 0.16 3.94 16 15 H 0.09 3.04 7.91 -2.39 -0.02 3.02 16 16 C -0.08 -3.09 2.99 -19.87 -0.06 -3.15 16 17 C -0.10 -3.87 6.31 22.26 0.14 -3.73 16 18 C -0.12 -4.79 9.96 22.37 0.22 -4.56 16 19 C 0.03 1.33 6.49 22.56 0.15 1.47 16 20 C 0.04 1.54 6.49 22.56 0.15 1.69 16 21 C -0.12 -4.58 9.45 22.37 0.21 -4.37 16 22 O -0.32 -10.52 10.42 -82.55 -0.86 -11.38 16 23 C 0.02 0.36 7.26 72.14 0.52 0.88 16 24 C 0.01 0.26 7.26 72.14 0.52 0.79 16 25 O -0.32 -10.78 10.42 -82.48 -0.86 -11.64 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.00 0.11 6.47 -2.39 -0.02 0.10 16 28 H -0.01 -0.84 5.34 -2.39 -0.01 -0.85 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.02 0.97 7.53 -2.38 -0.02 0.95 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.89 6.59 -2.39 -0.02 1.88 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.12 4.78 6.75 -2.91 -0.02 4.76 16 36 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.14 4.83 7.96 -2.91 -0.02 4.80 16 38 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.16 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.94 325.20 1.13 -71.81 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.02 Total: 17.26 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 3.96 Total: -29.16 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -4.16 Total: -84.74 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.72 Total: -23.02 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -72.94 1.13 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085572112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.967 kcal (2) G-P(sol) polarization free energy of solvation -72.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds