Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46368 * 2 1 4 4 N 1.46505 * 109.47295 * 240.00759 * 2 1 3 5 5 C 1.39973 * 120.00413 * 84.99364 * 4 2 1 6 6 C 1.40440 * 125.97705 * 0.02562 * 5 4 2 7 7 C 1.35245 * 107.85969 * 179.69963 * 6 5 4 8 8 N 1.34957 * 107.86843 * 0.42548 * 7 6 5 9 9 C 1.46495 * 125.97696 * 179.83761 * 8 7 6 10 10 C 1.50702 * 109.47571 * 124.71669 * 9 8 7 11 11 H 1.08002 * 119.99446 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 179.72119 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 N 1.31227 * 125.97916 * 179.97438 * 5 4 2 19 19 C 1.50701 * 109.47427 * 120.00308 * 2 1 3 20 20 C 1.38275 * 119.98265 * 260.00546 * 19 2 1 21 21 C 1.38223 * 120.04530 * 179.97438 * 20 19 2 22 22 C 1.38218 * 120.02572 * 359.97438 * 21 20 19 23 23 C 1.38432 * 119.97740 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.02670 * 180.02562 * 23 22 21 25 25 C 1.38169 * 119.98673 * 79.72732 * 19 2 1 26 26 H 1.08991 * 109.47230 * 60.00345 * 1 2 3 27 27 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47235 * 299.99353 * 1 2 3 29 29 H 0.97004 * 119.99206 * 265.00165 * 4 2 1 30 30 H 1.08000 * 126.06758 * 0.02562 * 6 5 4 31 31 H 1.08007 * 126.06527 * 180.25438 * 7 6 5 32 32 H 1.09000 * 109.47378 * 4.71328 * 9 8 7 33 33 H 1.09001 * 109.47153 * 244.71449 * 9 8 7 34 34 H 0.96999 * 120.00128 * 180.27192 * 13 12 10 35 35 H 1.08000 * 119.97262 * 359.97364 * 20 19 2 36 36 H 1.07999 * 119.98359 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.00984 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.01620 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1520 0.0079 -2.4020 6 6 1.8564 1.3655 -2.6062 7 6 2.1240 1.6583 -3.8992 8 7 2.5629 0.5307 -4.4969 9 6 2.9618 0.3999 -5.9004 10 6 4.3620 -0.1523 -5.9755 11 1 4.9010 -0.3823 -5.0683 12 6 4.9552 -0.3627 -7.2021 13 7 6.1791 -0.8395 -7.2674 14 14 4.0231 0.0358 -8.7711 15 1 3.2672 -1.1626 -9.2158 16 1 3.0767 1.1511 -8.5149 17 1 4.9844 0.4357 -9.8300 18 7 2.5763 -0.4913 -3.5391 19 6 2.0324 -0.7105 1.2304 20 6 2.4588 0.0199 2.3244 21 6 2.9194 -0.6304 3.4538 22 6 2.9537 -2.0117 3.4909 23 6 2.5261 -2.7439 2.3967 24 9 2.5587 -4.0940 2.4321 25 6 2.0615 -2.0914 1.2670 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 2.2491 -1.6317 -1.1527 30 1 1.4866 2.0547 -1.8615 31 1 2.0047 2.6228 -4.3706 32 1 2.9309 1.3784 -6.3797 33 1 2.2766 -0.2766 -6.4113 34 1 6.5980 -0.9839 -8.1303 35 1 2.4319 1.0992 2.2963 36 1 3.2517 -0.0590 4.3078 37 1 3.3132 -2.5196 4.3737 38 1 1.7238 -2.6616 0.4143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = 64.841798 kcal Electronic energy + Delta-G solvation = -21576.676414 eV Core-core repulsion = 18142.476130 eV Total energy + Delta-G solvation = -3434.200285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.05757 -40.36397 -39.55930 -36.27914 -33.54148 -32.16331 -30.85674 -30.54603 -29.59751 -28.66340 -26.85831 -24.17025 -23.07719 -22.34832 -21.41014 -20.06348 -19.41798 -17.69194 -16.98857 -16.70050 -16.40148 -16.19046 -15.76591 -15.41014 -14.78813 -14.43443 -14.18554 -14.09318 -13.69825 -13.41784 -13.24418 -12.98687 -12.52303 -12.37637 -12.28510 -12.21715 -12.08327 -11.90337 -11.44011 -11.06272 -11.00109 -10.80706 -10.29375 -9.81726 -9.65495 -9.36161 -9.21709 -8.90450 -8.72382 -7.97787 -7.07251 -6.19147 -4.20796 0.89545 0.95591 2.82721 3.09596 3.18984 3.23455 3.27003 3.37903 3.70444 3.98639 4.11847 4.26305 4.37032 4.53187 4.77814 4.91816 5.07094 5.08884 5.19261 5.26146 5.41165 5.50806 5.62846 5.71785 5.79535 5.84929 5.90498 6.03561 6.10839 6.17022 6.28164 6.45389 6.47237 6.63460 6.65007 6.97645 7.34539 7.63189 7.91039 8.13603 8.40366 8.80440 8.93060 9.36254 10.93735 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.003180 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.384953 B = 8801.562438 C = 9462.380531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.209 3.791 3 H 0.089 0.911 4 N -0.723 5.723 5 C 0.310 3.690 6 C -0.329 4.329 7 C 0.067 3.933 8 N -0.327 5.327 9 C 0.234 3.766 10 C -0.531 4.531 11 H 0.085 0.915 12 C 0.075 3.925 13 N -0.889 5.889 14 Si 0.875 3.125 15 H -0.272 1.272 16 H -0.265 1.265 17 H -0.281 1.281 18 N -0.326 5.326 19 C -0.055 4.055 20 C -0.120 4.120 21 C -0.089 4.089 22 C -0.158 4.158 23 C 0.101 3.899 24 F -0.140 7.140 25 C -0.145 4.145 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.398 0.602 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 3.686 19.910 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.103 3.897 3 H 0.107 0.893 4 N -0.366 5.366 5 C 0.053 3.947 6 C -0.362 4.362 7 C -0.084 4.084 8 N -0.106 5.106 9 C 0.114 3.886 10 C -0.570 4.570 11 H 0.103 0.897 12 C -0.129 4.129 13 N -0.527 5.527 14 Si 0.701 3.299 15 H -0.198 1.198 16 H -0.190 1.190 17 H -0.207 1.207 18 N -0.157 5.157 19 C -0.056 4.056 20 C -0.139 4.139 21 C -0.107 4.107 22 C -0.177 4.177 23 C 0.082 3.918 24 F -0.118 7.118 25 C -0.164 4.164 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.234 0.766 30 H 0.150 0.850 31 H 0.181 0.819 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.558 2.686 19.045 21.941 hybrid contribution -0.441 0.247 -0.485 0.700 sum -10.998 2.933 18.560 21.772 Atomic orbital electron populations 1.22316 0.94993 1.02606 1.02348 1.19528 0.93449 0.95878 0.80892 0.89280 1.43486 1.76716 1.11691 1.04685 1.19161 0.97407 0.90844 0.87281 1.20739 1.22861 0.95439 0.97171 1.22326 0.99502 0.92923 0.93679 1.48544 1.47316 1.04960 1.09791 1.19966 0.97637 0.98326 0.72629 1.21132 0.96634 1.43797 0.95392 0.89667 1.24845 0.94886 0.94447 0.98688 1.69880 1.13111 1.44117 1.25556 0.86888 0.80083 0.79392 0.83551 1.19754 1.19004 1.20666 1.77514 1.29072 1.12746 0.96360 1.19891 0.97139 0.92780 0.95744 1.21090 0.99375 1.00497 0.92891 1.20987 0.98040 0.93346 0.98305 1.21157 1.03331 0.94901 0.98314 1.17682 1.01501 0.76930 0.95680 1.91512 1.94321 1.29117 1.96883 1.20968 1.02654 0.94905 0.97867 0.91277 0.92344 0.91965 0.76619 0.85006 0.81931 0.93235 0.94719 0.92254 0.84976 0.84866 0.84841 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.21 2.34 2.77 -69.08 -0.19 2.15 16 3 H 0.09 0.97 7.00 -51.93 -0.36 0.60 16 4 N -0.72 -10.86 5.23 -54.69 -0.29 -11.14 16 5 C 0.31 5.88 8.14 -154.55 -1.26 4.62 16 6 C -0.33 -5.61 9.92 -39.82 -0.40 -6.00 16 7 C 0.07 1.23 11.43 -17.24 -0.20 1.03 16 8 N -0.33 -7.39 3.67 -62.56 -0.23 -7.62 16 9 C 0.23 5.61 5.33 -5.20 -0.03 5.58 16 10 C -0.53 -15.26 9.79 -34.44 -0.34 -15.60 16 11 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 12 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 14 Si 0.87 20.42 27.47 -169.99 -4.67 15.75 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 N -0.33 -7.57 12.42 31.41 0.39 -7.18 16 19 C -0.05 -0.57 4.95 -104.63 -0.52 -1.08 16 20 C -0.12 -1.03 9.67 -39.57 -0.38 -1.42 16 21 C -0.09 -0.70 10.04 -39.59 -0.40 -1.09 16 22 C -0.16 -1.42 10.03 -39.52 -0.40 -1.82 16 23 C 0.10 1.11 7.30 -39.42 -0.29 0.83 16 24 F -0.14 -1.68 17.27 2.25 0.04 -1.65 16 25 C -0.14 -1.60 9.03 -39.52 -0.36 -1.95 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.40 5.94 7.01 -40.82 -0.29 5.65 16 30 H 0.13 1.81 7.45 -52.49 -0.39 1.42 16 31 H 0.16 2.34 8.06 -52.48 -0.42 1.91 16 32 H 0.05 1.09 7.12 -51.93 -0.37 0.72 16 33 H 0.04 0.83 7.57 -51.93 -0.39 0.43 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.13 0.86 8.04 -52.49 -0.42 0.44 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.14 1.47 6.93 -52.49 -0.36 1.10 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -33.10 330.21 -8.21 -41.31 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.72 Total: 5.82 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -4.49 Total: -13.99 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.65 Total: -52.22 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.10 -8.21 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.153 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds