Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46368 * 2 1 4 4 N 1.46505 * 109.47295 * 240.00759 * 2 1 3 5 5 C 1.39973 * 120.00413 * 84.99364 * 4 2 1 6 6 C 1.40440 * 125.97705 * 0.02562 * 5 4 2 7 7 C 1.35245 * 107.85969 * 179.69963 * 6 5 4 8 8 N 1.34957 * 107.86843 * 0.42548 * 7 6 5 9 9 C 1.46495 * 125.97696 * 179.83761 * 8 7 6 10 10 C 1.50702 * 109.47571 * 124.71669 * 9 8 7 11 11 H 1.08002 * 119.99446 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 179.72119 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 N 1.31227 * 125.97916 * 179.97438 * 5 4 2 19 19 C 1.50701 * 109.47427 * 120.00308 * 2 1 3 20 20 C 1.38275 * 119.98265 * 260.00546 * 19 2 1 21 21 C 1.38223 * 120.04530 * 179.97438 * 20 19 2 22 22 C 1.38218 * 120.02572 * 359.97438 * 21 20 19 23 23 C 1.38432 * 119.97740 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.02670 * 180.02562 * 23 22 21 25 25 C 1.38169 * 119.98673 * 79.72732 * 19 2 1 26 26 H 1.08991 * 109.47230 * 60.00345 * 1 2 3 27 27 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47235 * 299.99353 * 1 2 3 29 29 H 0.97004 * 119.99206 * 265.00165 * 4 2 1 30 30 H 1.08000 * 126.06758 * 0.02562 * 6 5 4 31 31 H 1.08007 * 126.06527 * 180.25438 * 7 6 5 32 32 H 1.09000 * 109.47378 * 4.71328 * 9 8 7 33 33 H 1.09001 * 109.47153 * 244.71449 * 9 8 7 34 34 H 0.96999 * 120.00128 * 180.27192 * 13 12 10 35 35 H 1.08000 * 119.97262 * 359.97364 * 20 19 2 36 36 H 1.07999 * 119.98359 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.00984 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.01620 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1520 0.0079 -2.4020 6 6 1.8564 1.3655 -2.6062 7 6 2.1240 1.6583 -3.8992 8 7 2.5629 0.5307 -4.4969 9 6 2.9618 0.3999 -5.9004 10 6 4.3620 -0.1523 -5.9755 11 1 4.9010 -0.3823 -5.0683 12 6 4.9552 -0.3627 -7.2021 13 7 6.1791 -0.8395 -7.2674 14 14 4.0231 0.0358 -8.7711 15 1 3.2672 -1.1626 -9.2158 16 1 3.0767 1.1511 -8.5149 17 1 4.9844 0.4357 -9.8300 18 7 2.5763 -0.4913 -3.5391 19 6 2.0324 -0.7105 1.2304 20 6 2.4588 0.0199 2.3244 21 6 2.9194 -0.6304 3.4538 22 6 2.9537 -2.0117 3.4909 23 6 2.5261 -2.7439 2.3967 24 9 2.5587 -4.0940 2.4321 25 6 2.0615 -2.0914 1.2670 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 2.2491 -1.6317 -1.1527 30 1 1.4866 2.0547 -1.8615 31 1 2.0047 2.6228 -4.3706 32 1 2.9309 1.3784 -6.3797 33 1 2.2766 -0.2766 -6.4113 34 1 6.5980 -0.9839 -8.1303 35 1 2.4319 1.0992 2.2963 36 1 3.2517 -0.0590 4.3078 37 1 3.3132 -2.5196 4.3737 38 1 1.7238 -2.6616 0.4143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = 44.469684 kcal Electronic energy + Delta-G solvation = -21577.559816 eV Core-core repulsion = 18142.476130 eV Total energy + Delta-G solvation = -3435.083686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.92861 -41.79398 -40.38157 -37.33136 -35.42347 -33.72098 -31.97333 -31.59143 -30.80422 -29.76907 -28.60478 -25.06297 -24.43210 -23.55130 -22.44808 -21.47982 -20.72475 -19.05044 -18.59865 -17.99017 -17.29570 -17.08728 -16.70801 -16.63667 -16.28592 -15.82562 -15.47769 -15.06798 -14.75589 -14.68551 -14.47730 -14.19250 -14.10148 -13.67366 -13.55313 -13.20234 -12.96005 -12.84476 -12.75146 -12.60099 -12.27329 -12.01736 -11.82311 -11.79743 -11.13149 -11.01985 -10.84951 -9.96911 -9.66619 -9.46467 -8.47965 -8.36525 -6.46453 0.14888 0.22258 1.34739 1.35752 1.39984 1.48065 1.77501 2.28780 2.30255 2.58463 2.83587 2.95937 3.21578 3.58202 3.79834 4.05632 4.09575 4.20689 4.30087 4.34624 4.42657 4.47563 4.66127 4.75725 4.83343 4.91959 4.95344 4.98787 5.07614 5.12222 5.16077 5.27059 5.33164 5.35270 5.49946 5.65641 5.92320 6.03586 6.39187 6.53015 6.63240 6.76368 7.16645 7.37762 8.80762 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.003180 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.384953 B = 8801.562438 C = 9462.380531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.208 3.792 3 H 0.101 0.899 4 N -0.721 5.721 5 C 0.311 3.689 6 C -0.320 4.320 7 C 0.067 3.933 8 N -0.359 5.359 9 C 0.243 3.757 10 C -0.544 4.544 11 H 0.021 0.979 12 C 0.010 3.990 13 N -0.945 5.945 14 Si 0.959 3.041 15 H -0.268 1.268 16 H -0.228 1.228 17 H -0.277 1.277 18 N -0.398 5.398 19 C -0.066 4.066 20 C -0.116 4.116 21 C -0.082 4.082 22 C -0.157 4.157 23 C 0.074 3.926 24 F -0.154 7.154 25 C -0.161 4.161 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.393 0.607 30 H 0.171 0.829 31 H 0.205 0.795 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.271 0.729 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 6.664 20.872 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.103 3.897 3 H 0.119 0.881 4 N -0.363 5.363 5 C 0.054 3.946 6 C -0.353 4.353 7 C -0.082 4.082 8 N -0.139 5.139 9 C 0.122 3.878 10 C -0.582 4.582 11 H 0.040 0.960 12 C -0.188 4.188 13 N -0.585 5.585 14 Si 0.779 3.221 15 H -0.193 1.193 16 H -0.150 1.150 17 H -0.202 1.202 18 N -0.231 5.231 19 C -0.067 4.067 20 C -0.134 4.134 21 C -0.100 4.100 22 C -0.176 4.176 23 C 0.055 3.945 24 F -0.132 7.132 25 C -0.180 4.180 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.228 0.772 30 H 0.189 0.811 31 H 0.222 0.778 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.177 0.823 36 H 0.186 0.814 37 H 0.170 0.830 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.552 5.690 20.077 24.352 hybrid contribution 0.216 -0.710 -0.536 0.916 sum -12.336 4.979 19.541 23.639 Atomic orbital electron populations 1.22250 0.93766 1.02343 1.03192 1.19773 0.94312 0.96009 0.79585 0.88127 1.43849 1.76073 1.11677 1.04690 1.19604 0.95662 0.92063 0.87318 1.21177 1.21637 0.94858 0.97594 1.23133 0.97735 0.93203 0.94100 1.48360 1.49879 1.06274 1.09385 1.19730 0.94275 0.99253 0.74518 1.21278 0.99036 1.44478 0.93429 0.96012 1.25984 0.95801 0.93764 1.03248 1.70067 1.15580 1.45851 1.26960 0.85574 0.78936 0.80383 0.77172 1.19334 1.15035 1.20228 1.77394 1.32420 1.14946 0.98309 1.19879 0.98248 0.92376 0.96163 1.21451 0.97898 1.01859 0.92193 1.21407 0.96651 0.92892 0.99063 1.21480 1.02345 0.95678 0.98099 1.17982 1.03142 0.76615 0.96737 1.91470 1.94609 1.30154 1.97008 1.20987 1.03576 0.95592 0.97834 0.92090 0.93250 0.89289 0.77184 0.81116 0.77823 0.90174 0.94657 0.91964 0.82250 0.81398 0.83014 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.48 71.98 0.68 -2.10 16 2 C 0.21 4.32 2.77 44.25 0.12 4.44 16 3 H 0.10 1.87 7.00 -2.39 -0.02 1.85 16 4 N -0.72 -21.79 5.23 -326.95 -1.71 -23.50 16 5 C 0.31 11.81 8.14 133.39 1.09 12.90 16 6 C -0.32 -10.19 9.92 22.12 0.22 -9.97 16 7 C 0.07 2.30 11.43 83.52 0.96 3.26 16 8 N -0.36 -16.25 3.67 -351.85 -1.29 -17.54 16 9 C 0.24 11.58 5.33 85.63 0.46 12.03 16 10 C -0.54 -32.51 9.79 25.60 0.25 -32.26 16 11 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 12 C 0.01 0.60 5.47 84.65 0.46 1.06 16 13 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 14 Si 0.96 41.84 27.47 68.60 1.88 43.73 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.23 -8.51 6.54 99.48 0.65 -7.86 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 N -0.40 -19.18 12.42 -54.55 -0.68 -19.86 16 19 C -0.07 -1.27 4.95 -19.87 -0.10 -1.37 16 20 C -0.12 -1.64 9.67 22.28 0.22 -1.42 16 21 C -0.08 -1.03 10.04 22.26 0.22 -0.80 16 22 C -0.16 -2.56 10.03 22.31 0.22 -2.34 16 23 C 0.07 1.64 7.30 22.37 0.16 1.81 16 24 F -0.15 -3.87 17.27 44.97 0.78 -3.10 16 25 C -0.16 -3.62 9.03 22.31 0.20 -3.42 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.39 12.41 7.01 -92.71 -0.65 11.76 16 30 H 0.17 3.95 7.45 -2.91 -0.02 3.93 16 31 H 0.21 5.01 8.06 -2.91 -0.02 4.99 16 32 H 0.08 3.30 7.12 -2.39 -0.02 3.28 16 33 H 0.04 1.66 7.57 -2.39 -0.02 1.64 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.16 1.36 8.04 -2.91 -0.02 1.34 16 36 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.12 2.94 6.93 -2.91 -0.02 2.92 16 Total: -1.00 -78.46 330.21 4.82 -73.64 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.37 Total: 24.41 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 5.16 Total: -18.19 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -3.38 Total: -120.49 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.10 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.88 Total: 43.73 kcal Total: -78.46 4.82 -73.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.109 kcal (2) G-P(sol) polarization free energy of solvation -78.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds