Wall clock time and date at job start Tue Mar 31 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 N 1.46510 * 109.46914 * 240.00066 * 2 1 3 5 5 C 1.39983 * 119.99589 * 87.21161 * 4 2 1 6 6 C 1.40427 * 125.98120 * 359.97438 * 5 4 2 7 7 C 1.35245 * 107.86713 * 180.02562 * 6 5 4 8 8 N 1.34963 * 107.86351 * 359.97438 * 7 6 5 9 9 C 1.46491 * 125.97657 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47278 * 125.00123 * 9 8 7 11 11 H 1.07997 * 119.99777 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00173 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00029 * 359.72419 * 12 10 9 14 14 Si 1.86798 * 120.00029 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47226 * 179.72473 * 14 12 10 16 16 H 1.48498 * 109.46990 * 299.72243 * 14 12 10 17 17 H 1.48497 * 109.47132 * 59.72379 * 14 12 10 18 18 N 1.31226 * 125.97269 * 180.37032 * 5 4 2 19 19 C 1.50699 * 109.47417 * 120.00623 * 2 1 3 20 20 C 1.38214 * 120.01786 * 92.86663 * 19 2 1 21 21 C 1.38218 * 120.02947 * 179.97438 * 20 19 2 22 22 C 1.38269 * 120.05284 * 0.03083 * 21 20 19 23 23 C 1.38180 * 120.02034 * 359.97438 * 22 21 20 24 24 C 1.38439 * 120.01009 * 272.59988 * 19 2 1 25 25 F 1.35108 * 120.02545 * 359.97438 * 24 19 2 26 26 H 1.09001 * 109.47054 * 60.00005 * 1 2 3 27 27 H 1.09002 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46818 * 299.99992 * 1 2 3 29 29 H 0.96997 * 119.99976 * 267.20806 * 4 2 1 30 30 H 1.08005 * 126.06932 * 0.07014 * 6 5 4 31 31 H 1.07996 * 126.07272 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46980 * 5.00099 * 9 8 7 33 33 H 1.09003 * 109.47495 * 244.99976 * 9 8 7 34 34 H 0.97001 * 119.99896 * 0.27115 * 13 12 10 35 35 H 1.08006 * 119.98577 * 0.02562 * 20 19 2 36 36 H 1.08004 * 119.98113 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.99271 * 179.97438 * 22 21 20 38 38 H 1.08008 * 120.01089 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1960 0.0183 -2.3901 6 6 1.9461 1.3868 -2.5821 7 6 2.2399 1.6859 -3.8679 8 7 2.6605 0.5539 -4.4706 9 6 3.0806 0.4282 -5.8683 10 6 4.4646 -0.1655 -5.9254 11 1 4.9795 -0.4236 -5.0118 12 6 5.0735 -0.3789 -7.1439 13 7 4.4443 -0.0696 -8.2566 14 14 6.7893 -1.1141 -7.2145 15 1 7.2128 -1.2473 -8.6316 16 1 7.7381 -0.2263 -6.4958 17 1 6.7810 -2.4530 -6.5725 18 7 2.6182 -0.4813 -3.5278 19 6 2.0324 -0.7105 1.2304 20 6 2.3194 -2.0616 1.1799 21 6 2.7807 -2.7134 2.3080 22 6 2.9551 -2.0150 3.4886 23 6 2.6688 -0.6642 3.5415 24 6 2.2120 -0.0090 2.4102 25 9 1.9374 1.3130 2.4593 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2185 -1.6391 -1.1609 30 1 1.5843 2.0780 -1.8352 31 1 2.1534 2.6580 -4.3304 32 1 3.0881 1.4130 -6.3354 33 1 2.3847 -0.2209 -6.4000 34 1 3.5535 0.3125 -8.2199 35 1 2.1838 -2.6081 0.2582 36 1 3.0050 -3.7691 2.2676 37 1 3.3152 -2.5254 4.3696 38 1 2.8047 -0.1189 4.4638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:24 Heat of formation + Delta-G solvation = 60.034134 kcal Electronic energy + Delta-G solvation = -21818.924567 eV Core-core repulsion = 18384.515806 eV Total energy + Delta-G solvation = -3434.408761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.09214 -40.34317 -39.48571 -36.40641 -33.89837 -32.16476 -30.88362 -30.16133 -29.54453 -28.65485 -26.05558 -24.13639 -23.23824 -22.64070 -21.40401 -20.23530 -19.39984 -17.94036 -17.16754 -16.83240 -16.44160 -15.98325 -15.80379 -15.10183 -14.53877 -14.44526 -14.29166 -13.80030 -13.75750 -13.48890 -13.32444 -13.07959 -12.50509 -12.36333 -12.27688 -12.14107 -12.03368 -11.70559 -11.36121 -11.11068 -10.97178 -10.74761 -10.14121 -9.96857 -9.66253 -9.23962 -8.91992 -8.83846 -8.53834 -7.97843 -7.08511 -6.53299 -4.27111 0.88045 0.93198 2.83967 3.10864 3.33151 3.40084 3.42245 3.61098 3.69586 3.99313 4.11224 4.32207 4.44692 4.48922 4.68320 4.98579 5.03104 5.16987 5.20567 5.27000 5.43566 5.53135 5.63974 5.71425 5.79045 5.83044 5.90837 6.05219 6.11544 6.15824 6.26489 6.47170 6.57566 6.60579 6.76719 7.01114 7.58155 7.74353 7.93797 8.12578 8.41414 8.63882 8.82383 9.41058 10.83615 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.003402 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.222001 B = 8227.995505 C = 8992.204710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.210 3.790 3 H 0.090 0.910 4 N -0.722 5.722 5 C 0.309 3.691 6 C -0.330 4.330 7 C 0.066 3.934 8 N -0.326 5.326 9 C 0.251 3.749 10 C -0.605 4.605 11 H 0.063 0.937 12 C 0.022 3.978 13 N -0.907 5.907 14 Si 1.077 2.923 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.285 1.285 18 N -0.330 5.330 19 C -0.117 4.117 20 C -0.084 4.084 21 C -0.125 4.125 22 C -0.096 4.096 23 C -0.152 4.152 24 C 0.105 3.895 25 F -0.136 7.136 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.397 0.603 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 -0.939 22.569 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.103 3.897 3 H 0.108 0.892 4 N -0.366 5.366 5 C 0.052 3.948 6 C -0.363 4.363 7 C -0.085 4.085 8 N -0.105 5.105 9 C 0.133 3.867 10 C -0.643 4.643 11 H 0.081 0.919 12 C -0.183 4.183 13 N -0.543 5.543 14 Si 0.904 3.096 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.212 1.212 18 N -0.162 5.162 19 C -0.118 4.118 20 C -0.102 4.102 21 C -0.143 4.143 22 C -0.114 4.114 23 C -0.171 4.171 24 C 0.085 3.915 25 F -0.115 7.115 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.234 0.766 30 H 0.149 0.851 31 H 0.180 0.820 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.007 -2.254 20.782 21.496 hybrid contribution -1.473 1.199 1.533 2.441 sum -6.480 -1.055 22.316 23.261 Atomic orbital electron populations 1.22272 0.94811 1.02511 1.02401 1.19371 0.93506 0.95974 0.80814 0.89204 1.43461 1.77122 1.10367 1.05606 1.19144 0.97599 0.90659 0.87354 1.20748 1.23042 0.95080 0.97462 1.22330 0.99527 0.93011 0.93640 1.48697 1.47140 1.04011 1.10623 1.19667 0.97074 0.98077 0.71901 1.22115 0.99974 1.46094 0.96113 0.91881 1.25917 1.05483 0.95452 0.91422 1.70851 1.14742 1.39919 1.28746 0.83423 0.73829 0.76348 0.76036 1.20556 1.21277 1.21164 1.77446 1.29460 1.12343 0.96917 1.20106 1.02169 0.95031 0.94534 1.20863 0.97446 0.92986 0.98921 1.21222 0.99860 1.00572 0.92691 1.21021 0.98685 0.93290 0.98406 1.21131 1.02528 0.95749 0.97719 1.17453 1.01515 0.77931 0.94556 1.91504 1.91408 1.31577 1.96970 0.91245 0.92267 0.92072 0.76645 0.85062 0.82010 0.93957 0.95036 0.92320 0.84941 0.85154 0.85046 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.50 37.16 0.35 -1.47 16 2 C 0.21 2.68 2.63 -69.08 -0.18 2.50 16 3 H 0.09 1.23 6.60 -51.93 -0.34 0.89 16 4 N -0.72 -11.22 5.19 -54.69 -0.28 -11.51 16 5 C 0.31 6.10 8.16 -154.55 -1.26 4.84 16 6 C -0.33 -6.08 9.91 -39.82 -0.39 -6.48 16 7 C 0.07 1.31 11.44 -17.24 -0.20 1.11 16 8 N -0.33 -7.72 3.66 -62.56 -0.23 -7.95 16 9 C 0.25 6.50 5.57 -5.20 -0.03 6.47 16 10 C -0.60 -17.40 9.24 -34.44 -0.32 -17.72 16 11 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 12 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 13 N -0.91 -26.82 13.65 55.43 0.76 -26.06 16 14 Si 1.08 25.37 29.90 -169.99 -5.08 20.29 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 N -0.33 -7.84 12.43 31.41 0.39 -7.45 16 19 C -0.12 -1.33 5.05 -104.56 -0.53 -1.86 16 20 C -0.08 -0.85 9.23 -39.60 -0.37 -1.21 16 21 C -0.13 -1.05 10.04 -39.58 -0.40 -1.45 16 22 C -0.10 -0.74 10.04 -39.59 -0.40 -1.14 16 23 C -0.15 -1.35 10.03 -39.51 -0.40 -1.75 16 24 C 0.11 1.16 7.24 -39.42 -0.29 0.87 16 25 F -0.14 -1.60 16.53 2.25 0.04 -1.57 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.40 5.77 6.43 -40.82 -0.26 5.51 16 30 H 0.13 2.04 7.39 -52.48 -0.39 1.65 16 31 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 32 H 0.04 1.06 7.94 -51.93 -0.41 0.64 16 33 H 0.03 0.85 8.00 -51.93 -0.42 0.44 16 34 H 0.27 7.71 7.22 -40.82 -0.29 7.42 16 35 H 0.13 1.25 6.16 -52.48 -0.32 0.93 16 36 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -32.71 330.44 -8.53 -41.24 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.60 Total: 4.78 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -4.50 Total: -16.75 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.63 Total: -52.97 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.71 -8.53 -41.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.277 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds