Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 N 1.46510 * 109.46914 * 240.00066 * 2 1 3 5 5 C 1.39983 * 119.99589 * 87.21161 * 4 2 1 6 6 C 1.40427 * 125.98120 * 359.97438 * 5 4 2 7 7 C 1.35245 * 107.86713 * 180.02562 * 6 5 4 8 8 N 1.34963 * 107.86351 * 359.97438 * 7 6 5 9 9 C 1.46491 * 125.97657 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47278 * 125.00123 * 9 8 7 11 11 H 1.07997 * 119.99777 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00173 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00029 * 359.72419 * 12 10 9 14 14 Si 1.86798 * 120.00029 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47226 * 179.72473 * 14 12 10 16 16 H 1.48498 * 109.46990 * 299.72243 * 14 12 10 17 17 H 1.48497 * 109.47132 * 59.72379 * 14 12 10 18 18 N 1.31226 * 125.97269 * 180.37032 * 5 4 2 19 19 C 1.50699 * 109.47417 * 120.00623 * 2 1 3 20 20 C 1.38214 * 120.01786 * 92.86663 * 19 2 1 21 21 C 1.38218 * 120.02947 * 179.97438 * 20 19 2 22 22 C 1.38269 * 120.05284 * 0.03083 * 21 20 19 23 23 C 1.38180 * 120.02034 * 359.97438 * 22 21 20 24 24 C 1.38439 * 120.01009 * 272.59988 * 19 2 1 25 25 F 1.35108 * 120.02545 * 359.97438 * 24 19 2 26 26 H 1.09001 * 109.47054 * 60.00005 * 1 2 3 27 27 H 1.09002 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46818 * 299.99992 * 1 2 3 29 29 H 0.96997 * 119.99976 * 267.20806 * 4 2 1 30 30 H 1.08005 * 126.06932 * 0.07014 * 6 5 4 31 31 H 1.07996 * 126.07272 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46980 * 5.00099 * 9 8 7 33 33 H 1.09003 * 109.47495 * 244.99976 * 9 8 7 34 34 H 0.97001 * 119.99896 * 0.27115 * 13 12 10 35 35 H 1.08006 * 119.98577 * 0.02562 * 20 19 2 36 36 H 1.08004 * 119.98113 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.99271 * 179.97438 * 22 21 20 38 38 H 1.08008 * 120.01089 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1960 0.0183 -2.3901 6 6 1.9461 1.3868 -2.5821 7 6 2.2399 1.6859 -3.8679 8 7 2.6605 0.5539 -4.4706 9 6 3.0806 0.4282 -5.8683 10 6 4.4646 -0.1655 -5.9254 11 1 4.9795 -0.4236 -5.0118 12 6 5.0735 -0.3789 -7.1439 13 7 4.4443 -0.0696 -8.2566 14 14 6.7893 -1.1141 -7.2145 15 1 7.2128 -1.2473 -8.6316 16 1 7.7381 -0.2263 -6.4958 17 1 6.7810 -2.4530 -6.5725 18 7 2.6182 -0.4813 -3.5278 19 6 2.0324 -0.7105 1.2304 20 6 2.3194 -2.0616 1.1799 21 6 2.7807 -2.7134 2.3080 22 6 2.9551 -2.0150 3.4886 23 6 2.6688 -0.6642 3.5415 24 6 2.2120 -0.0090 2.4102 25 9 1.9374 1.3130 2.4593 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2185 -1.6391 -1.1609 30 1 1.5843 2.0780 -1.8352 31 1 2.1534 2.6580 -4.3304 32 1 3.0881 1.4130 -6.3354 33 1 2.3847 -0.2209 -6.4000 34 1 3.5535 0.3125 -8.2199 35 1 2.1838 -2.6081 0.2582 36 1 3.0050 -3.7691 2.2676 37 1 3.3152 -2.5254 4.3696 38 1 2.8047 -0.1189 4.4638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = 41.721546 kcal Electronic energy + Delta-G solvation = -21819.718660 eV Core-core repulsion = 18384.515806 eV Total energy + Delta-G solvation = -3435.202854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.92064 -41.90641 -40.30747 -37.52990 -35.89707 -33.63451 -31.68762 -31.55176 -30.87207 -29.82473 -27.94925 -25.20081 -24.82247 -23.66447 -22.53299 -21.70955 -20.77802 -19.22142 -18.80899 -18.06740 -17.35947 -17.19426 -16.65671 -16.28095 -15.97622 -15.74720 -15.57114 -15.31636 -15.07435 -14.61950 -14.53468 -14.13643 -13.93720 -13.72545 -13.60748 -13.28697 -13.15014 -13.07067 -12.83321 -12.59456 -12.22868 -11.95794 -11.83965 -11.57040 -11.27213 -10.84453 -10.68390 -9.96284 -9.66375 -9.57990 -8.86651 -8.53955 -6.55154 0.14702 0.22650 1.23334 1.49750 1.56582 1.61818 1.78753 2.17191 2.47319 2.58818 2.68683 3.01109 3.27306 3.44567 3.76447 3.94777 4.03429 4.17498 4.22994 4.28349 4.38875 4.41162 4.58891 4.66095 4.78601 4.82382 4.85746 4.89582 4.96954 5.06067 5.16340 5.25010 5.31671 5.44626 5.49001 5.64003 5.91705 5.92778 6.25923 6.33371 6.49144 6.69189 7.19657 7.27621 8.58170 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.003402 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.222001 B = 8227.995505 C = 8992.204710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.210 3.790 3 H 0.080 0.920 4 N -0.713 5.713 5 C 0.314 3.686 6 C -0.323 4.323 7 C 0.064 3.936 8 N -0.356 5.356 9 C 0.263 3.737 10 C -0.620 4.620 11 H 0.042 0.958 12 C -0.021 4.021 13 N -0.924 5.924 14 Si 1.120 2.880 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.277 1.277 18 N -0.387 5.387 19 C -0.133 4.133 20 C -0.098 4.098 21 C -0.124 4.124 22 C -0.089 4.089 23 C -0.152 4.152 24 C 0.085 3.915 25 F -0.146 7.146 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.400 0.600 30 H 0.163 0.837 31 H 0.196 0.804 32 H 0.050 0.950 33 H 0.010 0.990 34 H 0.260 0.740 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -1.182 25.029 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.105 3.895 3 H 0.098 0.902 4 N -0.357 5.357 5 C 0.056 3.944 6 C -0.356 4.356 7 C -0.085 4.085 8 N -0.136 5.136 9 C 0.143 3.857 10 C -0.658 4.658 11 H 0.061 0.939 12 C -0.220 4.220 13 N -0.560 5.560 14 Si 0.941 3.059 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.202 1.202 18 N -0.220 5.220 19 C -0.135 4.135 20 C -0.116 4.116 21 C -0.142 4.142 22 C -0.107 4.107 23 C -0.171 4.171 24 C 0.065 3.935 25 F -0.125 7.125 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.237 0.763 30 H 0.180 0.820 31 H 0.213 0.787 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.583 -2.477 23.294 23.870 hybrid contribution -1.689 1.258 0.958 2.314 sum -6.273 -1.218 24.252 25.080 Atomic orbital electron populations 1.22192 0.93650 1.02824 1.02577 1.19467 0.94332 0.95393 0.80344 0.90194 1.43707 1.76293 1.10604 1.05061 1.19531 0.95733 0.91584 0.87535 1.21117 1.21901 0.94942 0.97611 1.23017 0.98100 0.93297 0.94052 1.48434 1.49744 1.05362 1.10047 1.19276 0.95214 0.97545 0.73686 1.22301 1.01381 1.46610 0.95471 0.93950 1.27303 1.08653 0.95071 0.90957 1.70947 1.14807 1.41025 1.29266 0.82881 0.70108 0.76311 0.76618 1.19795 1.19596 1.20222 1.77335 1.32491 1.13743 0.98410 1.20005 1.03768 0.95632 0.94060 1.20993 0.98151 0.92668 0.99820 1.21558 0.98621 1.01787 0.92208 1.21440 0.97142 0.92837 0.99241 1.21453 1.01500 0.96421 0.97728 1.17697 1.02766 0.77721 0.95279 1.91474 1.91666 1.32264 1.97050 0.92287 0.91906 0.90552 0.76254 0.81962 0.78686 0.93219 0.97257 0.93044 0.85027 0.82803 0.81778 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.50 71.98 0.68 -2.63 16 2 C 0.21 5.21 2.63 44.24 0.12 5.33 16 3 H 0.08 2.13 6.60 -2.39 -0.02 2.12 16 4 N -0.71 -22.03 5.19 -326.95 -1.70 -23.72 16 5 C 0.31 12.42 8.16 133.39 1.09 13.51 16 6 C -0.32 -11.58 9.91 22.11 0.22 -11.36 16 7 C 0.06 2.50 11.44 83.52 0.96 3.45 16 8 N -0.36 -17.22 3.66 -351.86 -1.29 -18.51 16 9 C 0.26 14.03 5.57 85.64 0.48 14.51 16 10 C -0.62 -36.53 9.24 25.60 0.24 -36.29 16 11 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 12 C -0.02 -1.18 5.46 84.65 0.46 -0.72 16 13 N -0.92 -55.32 13.65 21.45 0.29 -55.02 16 14 Si 1.12 50.98 29.90 68.60 2.05 53.03 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 18 N -0.39 -18.86 12.43 -54.55 -0.68 -19.54 16 19 C -0.13 -2.90 5.05 -19.82 -0.10 -3.00 16 20 C -0.10 -1.85 9.23 22.26 0.21 -1.65 16 21 C -0.12 -1.74 10.04 22.27 0.22 -1.52 16 22 C -0.09 -1.07 10.04 22.26 0.22 -0.85 16 23 C -0.15 -2.31 10.03 22.31 0.22 -2.08 16 24 C 0.08 1.75 7.24 22.38 0.16 1.91 16 25 F -0.15 -3.30 16.53 44.97 0.74 -2.55 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.40 11.69 6.43 -92.71 -0.60 11.09 16 30 H 0.16 4.69 7.39 -2.91 -0.02 4.67 16 31 H 0.20 5.93 8.06 -2.91 -0.02 5.91 16 32 H 0.05 2.54 7.94 -2.39 -0.02 2.52 16 33 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 34 H 0.26 15.42 7.22 -92.71 -0.67 14.75 16 35 H 0.13 2.41 6.16 -2.91 -0.02 2.39 16 36 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -71.98 330.44 5.19 -66.79 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.59 Total: 20.91 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 5.18 Total: -21.39 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -3.37 Total: -116.80 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.74 Total: -2.55 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Total: -71.98 5.19 -66.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.513 kcal (2) G-P(sol) polarization free energy of solvation -71.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds