Wall clock time and date at job start Tue Mar 31 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47221 * 2 1 4 4 N 1.46508 * 109.47153 * 119.99896 * 2 1 3 5 5 C 1.39985 * 119.99609 * 275.00226 * 4 2 1 6 6 C 1.40424 * 125.97956 * 359.97438 * 5 4 2 7 7 C 1.35249 * 107.86702 * 179.97438 * 6 5 4 8 8 N 1.34963 * 107.86044 * 359.97438 * 7 6 5 9 9 C 1.46495 * 125.96956 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47093 * 125.00144 * 9 8 7 11 11 H 1.07995 * 119.99549 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99848 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00535 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99568 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46911 * 90.00153 * 14 12 10 16 16 H 1.48497 * 109.46863 * 210.00113 * 14 12 10 17 17 H 1.48492 * 109.47219 * 330.00417 * 14 12 10 18 18 N 1.31226 * 125.97589 * 179.69163 * 5 4 2 19 19 C 1.50702 * 109.47295 * 239.99258 * 2 1 3 20 20 C 1.38218 * 120.01553 * 265.02323 * 19 2 1 21 21 C 1.38226 * 120.02243 * 179.97438 * 20 19 2 22 22 C 1.38263 * 120.05409 * 0.02562 * 21 20 19 23 23 C 1.38176 * 120.02823 * 359.97438 * 22 21 20 24 24 C 1.38445 * 120.00815 * 85.00175 * 19 2 1 25 25 F 1.35093 * 120.02545 * 359.74916 * 24 19 2 26 26 H 1.08998 * 109.47092 * 300.00298 * 1 2 3 27 27 H 1.09001 * 109.47048 * 60.00439 * 1 2 3 28 28 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 29 29 H 0.96999 * 119.99995 * 94.99940 * 4 2 1 30 30 H 1.08003 * 126.06861 * 359.97438 * 6 5 4 31 31 H 1.08002 * 126.06902 * 180.02562 * 7 6 5 32 32 H 1.09006 * 109.47005 * 244.99908 * 9 8 7 33 33 H 1.09000 * 109.47490 * 4.99862 * 9 8 7 34 34 H 0.96991 * 120.00257 * 179.97438 * 13 12 10 35 35 H 1.07992 * 119.98884 * 359.97438 * 20 19 2 36 36 H 1.08006 * 119.96980 * 180.02562 * 21 20 19 37 37 H 1.08006 * 119.98991 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.01900 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1519 0.0078 2.4020 6 6 1.8564 1.3653 2.6062 7 6 2.1171 1.6565 3.9010 8 7 2.5601 0.5299 4.4976 9 6 2.9568 0.3986 5.9017 10 6 2.1696 -0.7144 6.5441 11 1 1.4466 -1.2688 5.9643 12 6 2.3733 -1.0256 7.8718 13 7 3.2541 -0.3508 8.5778 14 14 1.3970 -2.4048 8.6682 15 1 2.1321 -3.6856 8.5122 16 1 1.2141 -2.1117 10.1124 17 1 0.0689 -2.5134 8.0130 18 7 2.5704 -0.4928 3.5406 19 6 2.0323 -0.7106 -1.2304 20 6 2.3607 -2.0517 -1.1686 21 6 2.8210 -2.7038 -2.2972 22 6 2.9540 -2.0153 -3.4888 23 6 2.6264 -0.6745 -3.5530 24 6 2.1647 -0.0202 -2.4231 25 9 1.8388 1.2893 -2.4860 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 2.2490 -1.6318 1.1527 30 1 1.4866 2.0546 1.8615 31 1 1.9920 2.6195 4.3738 32 1 4.0212 0.1707 5.9588 33 1 2.7569 1.3338 6.4247 34 1 3.3971 -0.5695 9.5118 35 1 2.2576 -2.5904 -0.2383 36 1 3.0770 -3.7519 -2.2480 37 1 3.3142 -2.5257 -4.3699 38 1 2.7299 -0.1369 -4.4840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:27 Heat of formation + Delta-G solvation = 63.213353 kcal Electronic energy + Delta-G solvation = -21765.471483 eV Core-core repulsion = 18331.200584 eV Total energy + Delta-G solvation = -3434.270899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.08269 -40.25573 -39.46080 -36.35335 -33.56207 -32.10895 -30.87803 -30.22557 -29.50689 -28.58455 -26.43627 -24.10721 -23.24399 -22.55932 -21.35288 -20.05397 -19.32518 -17.91502 -16.83149 -16.52176 -16.41495 -15.99267 -15.79529 -15.10126 -14.69349 -14.49004 -14.31060 -13.85870 -13.77765 -13.35732 -13.31067 -12.71180 -12.48053 -12.33236 -12.22856 -12.16578 -11.96235 -11.59006 -11.38337 -10.99340 -10.91707 -10.82596 -10.20525 -10.01916 -9.59918 -9.31123 -9.19968 -8.87345 -8.58321 -7.88994 -7.01485 -6.19328 -4.24208 0.89291 0.94245 2.93931 3.18588 3.26465 3.31991 3.34730 3.38042 3.77566 4.01490 4.18318 4.34583 4.38126 4.50365 4.69476 5.00156 5.05052 5.15155 5.21464 5.32253 5.52221 5.57254 5.68624 5.74593 5.84462 5.86396 5.96606 6.10071 6.14197 6.22894 6.34579 6.56347 6.61773 6.82025 7.05265 7.19592 7.66923 7.76205 7.93623 8.16979 8.20451 8.80837 8.94665 9.41153 10.88989 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.003181 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.621724 B = 8800.907092 C = 9327.422605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.211 3.789 3 H 0.089 0.911 4 N -0.723 5.723 5 C 0.307 3.693 6 C -0.333 4.333 7 C 0.067 3.933 8 N -0.327 5.327 9 C 0.260 3.740 10 C -0.525 4.525 11 H 0.069 0.931 12 C 0.061 3.939 13 N -0.897 5.897 14 Si 0.907 3.093 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.273 1.273 18 N -0.332 5.332 19 C -0.116 4.116 20 C -0.084 4.084 21 C -0.125 4.125 22 C -0.097 4.097 23 C -0.153 4.153 24 C 0.105 3.895 25 F -0.136 7.136 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.396 0.604 30 H 0.130 0.870 31 H 0.163 0.837 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.266 0.734 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 0.046 -22.931 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.104 3.896 3 H 0.107 0.893 4 N -0.367 5.367 5 C 0.051 3.949 6 C -0.366 4.366 7 C -0.085 4.085 8 N -0.107 5.107 9 C 0.142 3.858 10 C -0.563 4.563 11 H 0.087 0.913 12 C -0.142 4.142 13 N -0.536 5.536 14 Si 0.734 3.266 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 N -0.164 5.164 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.143 4.143 22 C -0.115 4.115 23 C -0.171 4.171 24 C 0.085 3.915 25 F -0.115 7.115 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.233 0.767 30 H 0.148 0.852 31 H 0.180 0.820 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.978 -0.772 -22.010 22.113 hybrid contribution -0.703 -0.039 0.099 0.711 sum -2.681 -0.811 -21.911 22.090 Atomic orbital electron populations 1.22277 0.94810 1.02557 1.02451 1.19350 0.93550 0.95837 0.80817 0.89321 1.43466 1.76904 1.11528 1.04810 1.19132 0.98021 0.90735 0.87011 1.20740 1.23036 0.95598 0.97225 1.22333 0.99531 0.93220 0.93394 1.48988 1.47158 1.04344 1.10162 1.19655 0.97018 0.99175 0.69941 1.21276 1.22645 1.17061 0.95332 0.91317 1.24947 0.95443 0.96912 0.96863 1.69916 1.33946 1.40644 1.09061 0.86339 0.80302 0.81784 0.78130 1.20377 1.21040 1.19739 1.77420 1.30230 1.12706 0.96061 1.20111 1.02033 0.95164 0.94417 1.20877 0.97337 0.93034 0.99036 1.21223 0.99949 1.00554 0.92614 1.21015 0.98745 0.93391 0.98327 1.21127 1.02453 0.95826 0.97733 1.17447 1.01234 0.78399 0.94410 1.91500 1.90251 1.32753 1.96947 0.91095 0.92145 0.92277 0.76683 0.85228 0.81999 0.93975 0.92859 0.92407 0.84872 0.85173 0.85080 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.21 2.71 2.56 -69.08 -0.18 2.53 16 3 H 0.09 1.20 6.79 -51.93 -0.35 0.85 16 4 N -0.72 -11.23 5.20 -54.70 -0.28 -11.52 16 5 C 0.31 6.04 8.14 -154.55 -1.26 4.79 16 6 C -0.33 -6.11 9.92 -39.82 -0.40 -6.51 16 7 C 0.07 1.32 11.44 -17.24 -0.20 1.12 16 8 N -0.33 -7.70 3.67 -62.56 -0.23 -7.93 16 9 C 0.26 6.73 6.26 -5.19 -0.03 6.70 16 10 C -0.52 -14.86 9.23 -34.44 -0.32 -15.18 16 11 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.90 -25.74 13.29 55.43 0.74 -25.01 16 14 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.33 -7.83 12.42 31.41 0.39 -7.44 16 19 C -0.12 -1.31 5.06 -104.55 -0.53 -1.84 16 20 C -0.08 -0.85 9.23 -39.59 -0.37 -1.21 16 21 C -0.13 -1.03 10.04 -39.58 -0.40 -1.43 16 22 C -0.10 -0.73 10.04 -39.59 -0.40 -1.13 16 23 C -0.15 -1.33 10.03 -39.51 -0.40 -1.72 16 24 C 0.10 1.14 7.24 -39.41 -0.29 0.85 16 25 F -0.14 -1.58 16.57 2.25 0.04 -1.54 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.40 5.75 6.34 -40.82 -0.26 5.49 16 30 H 0.13 2.02 7.45 -52.48 -0.39 1.63 16 31 H 0.16 2.59 8.06 -52.49 -0.42 2.16 16 32 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 35 H 0.13 1.27 6.07 -52.49 -0.32 0.95 16 36 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -31.50 331.79 -8.53 -40.03 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.67 Total: 4.77 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -4.49 Total: -13.01 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.61 Total: -51.89 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.50 -8.53 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.245 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds