Wall clock time and date at job start Tue Mar 31 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47221 * 2 1 4 4 N 1.46508 * 109.47153 * 119.99896 * 2 1 3 5 5 C 1.39985 * 119.99609 * 275.00226 * 4 2 1 6 6 C 1.40424 * 125.97956 * 359.97438 * 5 4 2 7 7 C 1.35249 * 107.86702 * 179.97438 * 6 5 4 8 8 N 1.34963 * 107.86044 * 359.97438 * 7 6 5 9 9 C 1.46495 * 125.96956 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47093 * 125.00144 * 9 8 7 11 11 H 1.07995 * 119.99549 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99848 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00535 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99568 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46911 * 90.00153 * 14 12 10 16 16 H 1.48497 * 109.46863 * 210.00113 * 14 12 10 17 17 H 1.48492 * 109.47219 * 330.00417 * 14 12 10 18 18 N 1.31226 * 125.97589 * 179.69163 * 5 4 2 19 19 C 1.50702 * 109.47295 * 239.99258 * 2 1 3 20 20 C 1.38218 * 120.01553 * 265.02323 * 19 2 1 21 21 C 1.38226 * 120.02243 * 179.97438 * 20 19 2 22 22 C 1.38263 * 120.05409 * 0.02562 * 21 20 19 23 23 C 1.38176 * 120.02823 * 359.97438 * 22 21 20 24 24 C 1.38445 * 120.00815 * 85.00175 * 19 2 1 25 25 F 1.35093 * 120.02545 * 359.74916 * 24 19 2 26 26 H 1.08998 * 109.47092 * 300.00298 * 1 2 3 27 27 H 1.09001 * 109.47048 * 60.00439 * 1 2 3 28 28 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 29 29 H 0.96999 * 119.99995 * 94.99940 * 4 2 1 30 30 H 1.08003 * 126.06861 * 359.97438 * 6 5 4 31 31 H 1.08002 * 126.06902 * 180.02562 * 7 6 5 32 32 H 1.09006 * 109.47005 * 244.99908 * 9 8 7 33 33 H 1.09000 * 109.47490 * 4.99862 * 9 8 7 34 34 H 0.96991 * 120.00257 * 179.97438 * 13 12 10 35 35 H 1.07992 * 119.98884 * 359.97438 * 20 19 2 36 36 H 1.08006 * 119.96980 * 180.02562 * 21 20 19 37 37 H 1.08006 * 119.98991 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.01900 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1519 0.0078 2.4020 6 6 1.8564 1.3653 2.6062 7 6 2.1171 1.6565 3.9010 8 7 2.5601 0.5299 4.4976 9 6 2.9568 0.3986 5.9017 10 6 2.1696 -0.7144 6.5441 11 1 1.4466 -1.2688 5.9643 12 6 2.3733 -1.0256 7.8718 13 7 3.2541 -0.3508 8.5778 14 14 1.3970 -2.4048 8.6682 15 1 2.1321 -3.6856 8.5122 16 1 1.2141 -2.1117 10.1124 17 1 0.0689 -2.5134 8.0130 18 7 2.5704 -0.4928 3.5406 19 6 2.0323 -0.7106 -1.2304 20 6 2.3607 -2.0517 -1.1686 21 6 2.8210 -2.7038 -2.2972 22 6 2.9540 -2.0153 -3.4888 23 6 2.6264 -0.6745 -3.5530 24 6 2.1647 -0.0202 -2.4231 25 9 1.8388 1.2893 -2.4860 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 2.2490 -1.6318 1.1527 30 1 1.4866 2.0546 1.8615 31 1 1.9920 2.6195 4.3738 32 1 4.0212 0.1707 5.9588 33 1 2.7569 1.3338 6.4247 34 1 3.3971 -0.5695 9.5118 35 1 2.2576 -2.5904 -0.2383 36 1 3.0770 -3.7519 -2.2480 37 1 3.3142 -2.5257 -4.3699 38 1 2.7299 -0.1369 -4.4840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:27 Heat of formation + Delta-G solvation = 46.033157 kcal Electronic energy + Delta-G solvation = -21766.216472 eV Core-core repulsion = 18331.200584 eV Total energy + Delta-G solvation = -3435.015889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.89950 -41.80705 -40.28341 -37.46462 -35.52165 -33.61931 -31.74957 -31.55235 -30.80194 -29.78871 -28.31318 -25.14827 -24.72959 -23.61193 -22.45455 -21.54353 -20.71014 -18.79916 -18.62126 -18.04448 -17.33760 -17.23060 -16.63958 -16.47403 -16.06314 -15.88441 -15.38142 -15.25255 -14.87500 -14.54807 -14.22242 -14.12249 -14.08714 -13.66210 -13.57323 -13.16510 -13.08320 -12.90093 -12.78335 -12.69542 -12.27934 -12.21693 -11.81976 -11.79453 -11.21173 -11.03368 -10.69745 -9.94145 -9.63306 -9.48930 -8.58425 -8.27313 -6.45731 0.16897 0.24527 1.31893 1.37509 1.39572 1.50245 1.73175 2.25378 2.34333 2.62510 2.76109 2.99307 3.29473 3.47150 3.79304 4.02421 4.08767 4.22392 4.30674 4.35570 4.40683 4.46370 4.68319 4.84540 4.87702 4.91616 4.94197 5.03538 5.06486 5.08262 5.19456 5.27923 5.35036 5.46963 5.57657 5.60852 5.85999 5.93762 6.35076 6.39251 6.68822 6.78177 7.24381 7.35815 8.75785 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.003181 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.621724 B = 8800.907092 C = 9327.422605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.212 3.788 3 H 0.081 0.919 4 N -0.714 5.714 5 C 0.311 3.689 6 C -0.326 4.326 7 C 0.065 3.935 8 N -0.356 5.356 9 C 0.275 3.725 10 C -0.545 4.545 11 H 0.050 0.950 12 C 0.017 3.983 13 N -0.923 5.923 14 Si 0.972 3.028 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.272 1.272 18 N -0.387 5.387 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.089 4.089 23 C -0.152 4.152 24 C 0.086 3.914 25 F -0.145 7.145 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.400 0.600 30 H 0.161 0.839 31 H 0.196 0.804 32 H 0.014 0.986 33 H 0.055 0.945 34 H 0.272 0.728 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -0.549 -24.910 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.099 0.901 4 N -0.358 5.358 5 C 0.054 3.946 6 C -0.359 4.359 7 C -0.084 4.084 8 N -0.137 5.137 9 C 0.156 3.844 10 C -0.583 4.583 11 H 0.068 0.932 12 C -0.184 4.184 13 N -0.562 5.562 14 Si 0.796 3.204 15 H -0.199 1.199 16 H -0.195 1.195 17 H -0.197 1.197 18 N -0.220 5.220 19 C -0.133 4.133 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.107 4.107 23 C -0.171 4.171 24 C 0.066 3.934 25 F -0.124 7.124 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.237 0.763 30 H 0.178 0.822 31 H 0.213 0.787 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.588 -1.350 -24.035 24.212 hybrid contribution -0.495 0.145 0.524 0.735 sum -3.083 -1.205 -23.511 23.743 Atomic orbital electron populations 1.22201 0.94018 1.02671 1.02514 1.19430 0.94097 0.95416 0.80441 0.90107 1.43702 1.76116 1.11761 1.04267 1.19513 0.96210 0.91588 0.87260 1.21096 1.21941 0.95463 0.97372 1.23007 0.98115 0.93461 0.93835 1.48696 1.49748 1.05691 1.09521 1.19194 0.95059 0.98411 0.71734 1.21414 1.22926 1.18029 0.95902 0.93163 1.25758 0.96282 0.99131 0.97178 1.69995 1.34808 1.41811 1.09540 0.85347 0.78682 0.78736 0.77634 1.19893 1.19542 1.19715 1.77311 1.33128 1.14110 0.97448 1.19990 1.03685 0.95762 0.93900 1.20991 0.98078 0.92739 0.99894 1.21552 0.98736 1.01715 0.92146 1.21433 0.97171 0.92931 0.99152 1.21449 1.01394 0.96448 0.97772 1.17677 1.02420 0.78221 0.95061 1.91471 1.90512 1.33409 1.97018 0.92406 0.90577 0.92149 0.76280 0.82193 0.78733 0.96807 0.92737 0.91879 0.85092 0.82843 0.81794 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.48 71.98 0.68 -2.86 16 2 C 0.21 5.30 2.56 44.24 0.11 5.42 16 3 H 0.08 2.14 6.79 -2.39 -0.02 2.12 16 4 N -0.71 -22.18 5.20 -326.97 -1.70 -23.88 16 5 C 0.31 12.34 8.14 133.39 1.09 13.43 16 6 C -0.33 -11.72 9.92 22.11 0.22 -11.50 16 7 C 0.07 2.54 11.44 83.52 0.96 3.49 16 8 N -0.36 -17.22 3.67 -351.83 -1.29 -18.51 16 9 C 0.28 14.81 6.26 85.64 0.54 15.35 16 10 C -0.54 -31.73 9.23 25.60 0.24 -31.50 16 11 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 12 C 0.02 0.93 5.46 84.66 0.46 1.40 16 13 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 14 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 N -0.39 -18.78 12.42 -54.55 -0.68 -19.45 16 19 C -0.13 -2.86 5.06 -19.82 -0.10 -2.96 16 20 C -0.10 -1.86 9.23 22.26 0.21 -1.66 16 21 C -0.12 -1.71 10.04 22.27 0.22 -1.49 16 22 C -0.09 -1.05 10.04 22.26 0.22 -0.83 16 23 C -0.15 -2.25 10.03 22.31 0.22 -2.02 16 24 C 0.09 1.74 7.24 22.38 0.16 1.90 16 25 F -0.15 -3.23 16.57 44.97 0.75 -2.48 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.40 11.72 6.34 -92.71 -0.59 11.13 16 30 H 0.16 4.67 7.45 -2.91 -0.02 4.65 16 31 H 0.20 5.95 8.06 -2.91 -0.02 5.93 16 32 H 0.01 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.05 2.85 8.07 -2.39 -0.02 2.84 16 34 H 0.27 14.72 8.31 -92.72 -0.77 13.95 16 35 H 0.13 2.44 6.07 -2.91 -0.02 2.42 16 36 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 38 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -69.32 331.79 5.11 -64.21 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.49 Total: 20.52 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 5.23 Total: -13.84 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -3.38 Total: -115.07 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.75 Total: -2.48 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -69.32 5.11 -64.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.243 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds