Wall clock time and date at job start Tue Mar 31 2020 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.46902 * 2 1 4 4 C 1.36937 * 120.00354 * 266.74987 * 3 2 1 5 5 H 1.07998 * 120.00184 * 15.10323 * 4 3 2 6 6 C 1.38819 * 119.99894 * 195.10750 * 4 3 2 7 7 N 1.31619 * 120.00224 * 21.69795 * 6 4 3 8 8 Si 1.86799 * 119.99454 * 201.70307 * 6 4 3 9 9 H 1.48498 * 109.47330 * 90.00202 * 8 6 4 10 10 H 1.48507 * 109.46888 * 209.99441 * 8 6 4 11 11 H 1.48498 * 109.47365 * 329.99685 * 8 6 4 12 12 C 1.46501 * 119.99796 * 86.75334 * 3 2 1 13 13 C 1.50700 * 109.47401 * 84.88296 * 12 3 2 14 14 C 1.35094 * 126.07394 * 5.33791 * 13 12 3 15 15 N 1.35040 * 107.97957 * 180.12298 * 14 13 12 16 16 H 0.96990 * 125.93057 * 179.86624 * 15 14 13 17 17 N 1.40070 * 108.13642 * 359.61110 * 15 14 13 18 18 C 1.31621 * 108.11269 * 0.23889 * 17 15 14 19 19 C 1.48420 * 126.03868 * 179.97438 * 18 17 15 20 20 C 1.39332 * 120.09316 * 137.94062 * 19 18 17 21 21 C 1.37981 * 119.90203 * 179.79119 * 20 19 18 22 22 C 1.38540 * 120.09600 * 0.48205 * 21 20 19 23 23 F 1.35100 * 119.90093 * 179.76596 * 22 21 20 24 24 C 1.38532 * 120.19093 * 359.74594 * 22 21 20 25 25 C 1.37991 * 120.09484 * 0.02562 * 24 22 21 26 26 H 1.09006 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47125 * 299.99532 * 1 2 3 28 28 H 1.08997 * 109.47202 * 59.99897 * 1 2 3 29 29 H 1.09009 * 109.47129 * 240.00523 * 2 1 3 30 30 H 1.08997 * 109.47098 * 120.00882 * 2 1 3 31 31 H 0.97001 * 119.99622 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47289 * 324.88826 * 12 3 2 33 33 H 1.08994 * 109.47516 * 204.88577 * 12 3 2 34 34 H 1.07995 * 126.00777 * 0.02562 * 14 13 12 35 35 H 1.08001 * 120.04416 * 0.02562 * 20 19 18 36 36 H 1.08008 * 119.94891 * 180.20519 * 21 20 19 37 37 H 1.08004 * 119.95688 * 180.02562 * 24 22 21 38 38 H 1.07997 * 120.05044 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3099 2.0044 -1.1840 5 1 1.9590 1.5854 -2.1155 6 6 3.0567 3.1746 -1.1868 7 7 3.8334 3.4622 -0.1639 8 14 2.9589 4.3411 -2.6425 9 1 1.8732 5.3281 -2.4139 10 1 4.2527 5.0546 -2.7928 11 1 2.6734 3.5683 -3.8780 12 6 2.1947 2.0957 1.2667 13 6 3.5473 1.7676 1.8445 14 6 4.5079 1.0269 1.2499 15 7 5.5642 0.9631 2.0887 16 1 6.3965 0.4940 1.9213 17 7 5.2515 1.6968 3.2402 18 6 4.0370 2.1837 3.0978 19 6 3.3114 3.0225 4.0841 20 6 2.5734 4.1240 3.6557 21 6 1.8968 4.8985 4.5756 22 6 1.9586 4.5883 5.9244 23 9 1.2985 5.3522 6.8221 24 6 2.6951 3.4969 6.3551 25 6 3.3709 2.7141 5.4416 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 4.3548 4.2801 -0.1658 32 1 1.4169 1.7911 1.9671 33 1 2.1253 3.1692 1.0911 34 1 4.4419 0.5655 0.2757 35 1 2.5279 4.3688 2.6048 36 1 1.3218 5.7506 4.2440 37 1 2.7404 3.2583 7.4075 38 1 3.9445 1.8632 5.7781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:08 Heat of formation + Delta-G solvation = 68.433994 kcal Electronic energy + Delta-G solvation = -22951.021452 eV Core-core repulsion = 19516.976937 eV Total energy + Delta-G solvation = -3434.044515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.84089 -41.78243 -39.58461 -37.72623 -33.66897 -33.46326 -32.24292 -31.61149 -30.08939 -29.85104 -26.97599 -25.22802 -24.26313 -23.82638 -22.22829 -21.19964 -20.41940 -18.68557 -18.47580 -18.12317 -17.08001 -16.80772 -16.54335 -16.50572 -15.63178 -15.37777 -15.11615 -15.04601 -14.45260 -14.28507 -14.14709 -14.02672 -13.75580 -13.21734 -13.19433 -13.00477 -12.86377 -12.63901 -12.53030 -12.33114 -12.07289 -11.90945 -11.68822 -11.59680 -11.28847 -10.46287 -10.40453 -10.02634 -9.30808 -8.80223 -8.59882 -7.61611 -5.03762 0.01372 0.34537 1.36965 1.50583 1.56728 1.59676 2.22757 2.31782 2.61613 2.82650 3.30757 3.43154 3.72893 3.78036 3.89056 4.00502 4.36062 4.40824 4.50639 4.63134 4.75538 4.81426 4.91356 4.99034 5.02591 5.08113 5.15157 5.17896 5.24915 5.31479 5.34685 5.59599 5.63735 5.65188 5.81436 5.89987 5.96867 6.10206 6.44247 6.77929 7.04551 7.31162 8.04501 8.47136 9.31102 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.005538 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.360546 B = 5055.097798 C = 5370.403423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 N -0.607 5.607 4 C -0.256 4.256 5 H 0.065 0.935 6 C -0.032 4.032 7 N -0.891 5.891 8 Si 0.937 3.063 9 H -0.296 1.296 10 H -0.307 1.307 11 H -0.279 1.279 12 C 0.256 3.744 13 C -0.167 4.167 14 C 0.093 3.907 15 N -0.479 5.479 16 H 0.442 0.558 17 N -0.320 5.320 18 C 0.085 3.915 19 C -0.020 4.020 20 C -0.074 4.074 21 C -0.151 4.151 22 C 0.088 3.912 23 F -0.143 7.143 24 C -0.146 4.146 25 C -0.072 4.072 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.238 0.762 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.158 0.842 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -3.473 9.486 10.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 N -0.329 5.329 4 C -0.386 4.386 5 H 0.083 0.917 6 C -0.229 4.229 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.224 1.224 10 H -0.234 1.234 11 H -0.205 1.205 12 C 0.129 3.871 13 C -0.179 4.179 14 C -0.052 4.052 15 N -0.190 5.190 16 H 0.287 0.713 17 N -0.146 5.146 18 C -0.079 4.079 19 C -0.022 4.022 20 C -0.093 4.093 21 C -0.170 4.170 22 C 0.069 3.931 23 F -0.122 7.122 24 C -0.164 4.164 25 C -0.091 4.091 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.175 0.825 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.841 -3.438 10.234 10.828 hybrid contribution -0.067 0.904 -1.839 2.051 sum -0.908 -2.533 8.394 8.815 Atomic orbital electron populations 1.22189 0.98075 1.00752 1.00581 1.20863 0.93285 0.85191 0.99125 1.44157 1.76103 1.10316 1.02325 1.19276 1.27059 1.05727 0.86523 0.91699 1.25186 0.97831 1.01064 0.98825 1.70426 1.27228 1.24451 1.31518 0.85737 0.75700 0.80374 0.81277 1.22379 1.23418 1.20465 1.18777 0.88320 0.96066 0.83952 1.20657 1.01045 1.03209 0.93010 1.21781 0.87184 1.01202 0.95062 1.45962 1.16032 1.43439 1.13539 0.71310 1.77163 1.15386 1.14841 1.07218 1.20623 0.92592 0.99448 0.95197 1.18039 0.97554 0.94617 0.92027 1.21136 0.94806 0.93220 1.00174 1.21170 1.02416 1.02243 0.91177 1.17835 0.96387 0.92266 0.86624 1.91475 1.78993 1.74558 1.67149 1.21234 0.98600 0.94618 1.01958 1.21158 0.97689 0.99508 0.90714 0.91514 0.94099 0.94245 0.93512 0.94122 0.95231 0.96192 0.92346 0.82492 0.85749 0.83184 0.81865 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 10.24 71.98 0.74 -4.33 16 2 C 0.14 5.22 6.40 86.38 0.55 5.78 16 3 N -0.61 -27.06 1.73 -706.34 -1.23 -28.28 16 4 C -0.26 -12.66 9.66 84.04 0.81 -11.85 16 5 H 0.07 3.22 7.92 -2.91 -0.02 3.20 16 6 C -0.03 -1.62 4.89 84.86 0.41 -1.20 16 7 N -0.89 -46.35 8.73 21.65 0.19 -46.16 16 8 Si 0.94 42.85 29.61 68.60 2.03 44.89 16 9 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.31 -14.50 7.11 99.48 0.71 -13.80 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.26 11.34 4.45 85.63 0.38 11.72 16 13 C -0.17 -7.12 4.48 -19.95 -0.09 -7.21 16 14 C 0.09 3.82 10.37 83.48 0.87 4.69 16 15 N -0.48 -17.29 7.35 -57.67 -0.42 -17.71 16 16 H 0.44 12.50 8.96 -213.35 -1.91 10.59 16 17 N -0.32 -12.58 12.74 -48.16 -0.61 -13.19 16 18 C 0.09 3.43 6.67 42.53 0.28 3.72 16 19 C -0.02 -0.71 5.75 -20.04 -0.12 -0.82 16 20 C -0.07 -2.52 9.03 22.47 0.20 -2.32 16 21 C -0.15 -4.34 10.01 22.28 0.22 -4.11 16 22 C 0.09 2.36 7.30 22.41 0.16 2.52 16 23 F -0.14 -3.71 17.26 44.97 0.78 -2.93 16 24 C -0.15 -3.56 10.01 22.28 0.22 -3.34 16 25 C -0.07 -2.04 9.78 22.47 0.22 -1.82 16 26 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.70 8.01 -2.38 -0.02 1.68 16 30 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 31 H 0.24 12.73 8.31 -92.71 -0.77 11.96 16 32 H 0.02 0.85 8.11 -2.38 -0.02 0.83 16 33 H 0.06 2.90 4.93 -2.39 -0.01 2.89 16 34 H 0.16 6.70 7.78 -2.91 -0.02 6.67 16 35 H 0.12 4.83 6.42 -2.91 -0.02 4.81 16 36 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 37 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -56.60 324.91 4.78 -51.82 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.82 Total: 20.14 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.87 Total: -8.57 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -2.07 Total: -105.34 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.89 kcal Total: -56.60 4.78 -51.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.255 kcal (2) G-P(sol) polarization free energy of solvation -56.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds