Wall clock time and date at job start Tue Mar 31 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14005 * 60.38201 * 3 2 1 5 5 C 1.37939 * 119.90085 * 179.97438 * 4 3 2 6 6 C 1.38340 * 120.17550 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.85729 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47650 * 104.99674 * 7 6 5 9 9 C 1.46900 * 111.00355 * 190.00114 * 8 7 6 10 10 C 1.53235 * 109.34263 * 187.25389 * 9 8 7 11 11 N 1.47086 * 108.51886 * 306.16546 * 10 9 8 12 12 C 1.36930 * 120.88084 * 231.18344 * 11 10 9 13 13 H 1.08003 * 120.00034 * 27.13616 * 12 11 10 14 14 C 1.38810 * 119.99851 * 206.85031 * 12 11 10 15 15 N 1.31624 * 120.00188 * 17.17041 * 14 12 11 16 16 Si 1.86800 * 120.00209 * 197.16621 * 14 12 11 17 17 H 1.48501 * 109.47038 * 90.00165 * 16 14 12 18 18 H 1.48496 * 109.47422 * 210.00457 * 16 14 12 19 19 H 1.48499 * 109.47085 * 330.00676 * 16 14 12 20 20 C 1.47081 * 118.23455 * 51.46100 * 11 10 9 21 21 C 1.46901 * 110.99711 * 314.29968 * 8 7 6 22 22 C 1.38557 * 120.28497 * 0.27133 * 6 5 4 23 23 F 1.35097 * 119.95273 * 179.74706 * 22 6 5 24 24 C 1.38202 * 120.09602 * 359.49463 * 22 6 5 25 25 H 1.08005 * 120.05115 * 359.95946 * 4 3 2 26 26 H 1.07999 * 119.90825 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46903 * 344.99249 * 7 6 5 28 28 H 1.09001 * 109.47175 * 224.99661 * 7 6 5 29 29 H 1.09002 * 109.49350 * 67.29049 * 9 8 7 30 30 H 1.08999 * 109.49121 * 307.21323 * 9 8 7 31 31 H 1.08998 * 109.62971 * 186.46211 * 10 9 8 32 32 H 1.09003 * 109.79054 * 65.96881 * 10 9 8 33 33 H 0.96996 * 120.00064 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.63185 * 68.25003 * 20 11 10 35 35 H 1.08998 * 109.62646 * 188.83355 * 20 11 10 36 36 H 1.09000 * 109.49497 * 292.70822 * 21 8 7 37 37 H 1.09005 * 109.49279 * 52.75985 * 21 8 7 38 38 H 1.07991 * 120.09115 * 180.27008 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.5959 -1.0499 5 6 4.6489 -0.5920 -1.0452 6 6 5.3390 0.0017 -0.0035 7 6 6.8460 0.0024 -0.0059 8 7 7.3346 1.3425 -0.3569 9 6 8.7831 1.3275 -0.6012 10 6 9.2818 2.7648 -0.7846 11 7 8.4801 3.4067 -1.8375 12 6 9.0823 4.0465 -2.8877 13 1 10.0673 3.7438 -3.2114 14 6 8.4245 5.0801 -3.5402 15 7 7.3981 5.6724 -2.9672 16 14 8.9959 5.6307 -5.2313 17 1 8.2814 4.8506 -6.2734 18 1 8.7027 7.0758 -5.4067 19 1 10.4579 5.4033 -5.3581 20 6 7.0144 3.3485 -1.7291 21 6 6.6050 1.8831 -1.5116 22 6 4.6506 0.5913 1.0445 23 9 5.3313 1.1647 2.0608 24 6 3.2686 0.5983 1.0490 25 1 2.7328 -1.0599 -1.8643 26 1 5.1915 -1.0529 -1.8573 27 1 7.2085 -0.7197 -0.7376 28 1 7.2110 -0.2695 0.9845 29 1 8.9940 0.7516 -1.5023 30 1 9.2907 0.8721 0.2491 31 1 10.3312 2.7535 -1.0790 32 1 9.1692 3.3164 0.1489 33 1 6.9387 6.3949 -3.4230 34 1 6.6855 3.9531 -0.8839 35 1 6.5642 3.7233 -2.6482 36 1 6.8462 1.2994 -2.4000 37 1 5.5330 1.8303 -1.3217 38 1 2.7321 1.0616 1.8637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103882424.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:44 Heat of formation + Delta-G solvation = 47.628461 kcal Electronic energy + Delta-G solvation = -22596.679053 eV Core-core repulsion = 19161.732342 eV Total energy + Delta-G solvation = -3434.946711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.85594 -39.82116 -38.02831 -36.61270 -34.65276 -32.35512 -31.02609 -30.66156 -29.91928 -27.58187 -25.22829 -23.20635 -23.13861 -22.56549 -21.47735 -19.45878 -19.08672 -16.95771 -16.70872 -16.17663 -15.89263 -15.81035 -15.06758 -14.45355 -14.28113 -14.22036 -14.09217 -13.96543 -13.61957 -13.45175 -13.22686 -13.09795 -12.97724 -12.59518 -12.17536 -11.98496 -11.61394 -11.47430 -11.30659 -11.06851 -10.76697 -10.49083 -10.33366 -10.07963 -9.78805 -9.63276 -9.24249 -8.86384 -8.51335 -7.86627 -6.67598 -5.78560 -3.20195 0.37825 0.92617 2.38581 2.60245 3.37070 3.44116 3.45124 3.45496 3.52996 4.17998 4.32756 4.49225 4.49601 4.56116 4.68138 4.98220 5.29541 5.35077 5.40111 5.42732 5.59259 5.71967 5.75493 5.85663 5.88770 5.91649 6.08819 6.11899 6.18940 6.29957 6.49032 6.53335 6.67130 6.92335 7.19955 7.22270 7.50243 7.62151 7.68025 7.80521 8.42968 9.20677 9.84017 10.42620 11.30127 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.004299 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.843388 B = 6511.307788 C = 7307.322247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.259 3.741 3 C -0.007 4.007 4 C -0.080 4.080 5 C -0.087 4.087 6 C -0.078 4.078 7 C 0.087 3.913 8 N -0.525 5.525 9 C 0.046 3.954 10 C 0.149 3.851 11 N -0.595 5.595 12 C -0.253 4.253 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.179 3.821 21 C 0.033 3.967 22 C 0.125 3.875 23 F -0.120 7.120 24 C -0.110 4.110 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.254 0.746 34 H 0.026 0.974 35 H 0.088 0.912 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 -14.596 6.308 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.056 4.056 3 C -0.011 4.011 4 C -0.101 4.101 5 C -0.106 4.106 6 C -0.080 4.080 7 C -0.041 4.041 8 N -0.250 5.250 9 C -0.083 4.083 10 C 0.022 3.978 11 N -0.319 5.319 12 C -0.383 4.383 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.053 3.947 21 C -0.096 4.096 22 C 0.105 3.895 23 F -0.098 7.098 24 C -0.131 4.131 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.614 -14.096 6.672 16.940 hybrid contribution 0.882 -0.023 -1.373 1.632 sum -5.732 -14.120 5.299 16.134 Atomic orbital electron populations 1.81264 1.11951 1.08288 1.07499 1.25545 0.92458 0.93783 0.93841 1.15624 0.84376 1.03786 0.97273 1.21162 0.94071 0.97891 0.96987 1.20938 0.93392 0.98709 0.97537 1.20212 0.97194 0.97122 0.93490 1.21136 0.88644 0.92413 1.01896 1.62178 1.04738 1.18847 1.39232 1.22637 0.87053 1.00181 0.98475 1.20969 0.94547 0.89966 0.92339 1.44151 1.01072 1.63194 1.23462 1.19202 1.02162 1.10732 1.06162 0.91622 1.25022 0.99077 0.95986 0.99540 1.70029 1.23781 1.24339 1.36568 0.86297 0.78320 0.77572 0.84622 1.21512 1.21747 1.20469 1.20946 0.84019 0.88596 1.01135 1.23057 0.96674 1.00221 0.89668 1.17158 0.88908 0.96636 0.86815 1.91573 1.79676 1.81827 1.56725 1.21088 0.92513 1.00271 0.99229 0.84342 0.84066 0.93682 0.89721 0.95213 0.91855 0.92564 0.95585 0.93602 0.95570 0.89396 0.95565 0.92059 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.42 18.54 41.84 0.78 -4.64 16 2 C 0.26 2.82 15.33 -22.47 -0.34 2.48 16 3 C -0.01 -0.07 5.73 -106.94 -0.61 -0.68 16 4 C -0.08 -0.68 9.75 -39.16 -0.38 -1.06 16 5 C -0.09 -0.80 9.00 -39.65 -0.36 -1.16 16 6 C -0.08 -0.89 3.47 -104.47 -0.36 -1.25 16 7 C 0.09 1.08 5.08 -4.98 -0.03 1.06 16 8 N -0.52 -8.69 4.77 -235.46 -1.12 -9.82 16 9 C 0.05 0.77 5.58 -3.70 -0.02 0.75 16 10 C 0.15 3.07 6.69 -3.60 -0.02 3.05 16 11 N -0.60 -14.82 3.03 -171.73 -0.52 -15.34 16 12 C -0.25 -6.87 9.63 -15.06 -0.15 -7.01 16 13 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 14 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 15 N -0.90 -26.05 11.16 55.49 0.62 -25.43 16 16 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.18 4.25 5.45 -3.36 -0.02 4.23 16 21 C 0.03 0.60 5.12 -3.46 -0.02 0.59 16 22 C 0.12 1.47 7.24 -39.48 -0.29 1.19 16 23 F -0.12 -1.64 16.73 2.25 0.04 -1.60 16 24 C -0.11 -1.10 9.74 -39.09 -0.38 -1.48 16 25 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 26 H 0.14 1.07 7.99 -52.49 -0.42 0.65 16 27 H 0.05 0.51 7.88 -51.93 -0.41 0.10 16 28 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.32 6.12 -51.93 -0.32 2.00 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 1.04 6.11 -51.93 -0.32 0.73 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -30.63 324.99 -8.21 -38.84 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.80 Total: -4.01 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -3.06 Total: 0.67 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.25 Total: -55.23 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.63 -8.21 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882424.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.470 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds