Wall clock time and date at job start Tue Mar 31 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14005 * 60.38201 * 3 2 1 5 5 C 1.37939 * 119.90085 * 179.97438 * 4 3 2 6 6 C 1.38340 * 120.17550 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.85729 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47650 * 104.99674 * 7 6 5 9 9 C 1.46900 * 111.00355 * 190.00114 * 8 7 6 10 10 C 1.53235 * 109.34263 * 187.25389 * 9 8 7 11 11 N 1.47086 * 108.51886 * 306.16546 * 10 9 8 12 12 C 1.36930 * 120.88084 * 231.18344 * 11 10 9 13 13 H 1.08003 * 120.00034 * 27.13616 * 12 11 10 14 14 C 1.38810 * 119.99851 * 206.85031 * 12 11 10 15 15 N 1.31624 * 120.00188 * 17.17041 * 14 12 11 16 16 Si 1.86800 * 120.00209 * 197.16621 * 14 12 11 17 17 H 1.48501 * 109.47038 * 90.00165 * 16 14 12 18 18 H 1.48496 * 109.47422 * 210.00457 * 16 14 12 19 19 H 1.48499 * 109.47085 * 330.00676 * 16 14 12 20 20 C 1.47081 * 118.23455 * 51.46100 * 11 10 9 21 21 C 1.46901 * 110.99711 * 314.29968 * 8 7 6 22 22 C 1.38557 * 120.28497 * 0.27133 * 6 5 4 23 23 F 1.35097 * 119.95273 * 179.74706 * 22 6 5 24 24 C 1.38202 * 120.09602 * 359.49463 * 22 6 5 25 25 H 1.08005 * 120.05115 * 359.95946 * 4 3 2 26 26 H 1.07999 * 119.90825 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46903 * 344.99249 * 7 6 5 28 28 H 1.09001 * 109.47175 * 224.99661 * 7 6 5 29 29 H 1.09002 * 109.49350 * 67.29049 * 9 8 7 30 30 H 1.08999 * 109.49121 * 307.21323 * 9 8 7 31 31 H 1.08998 * 109.62971 * 186.46211 * 10 9 8 32 32 H 1.09003 * 109.79054 * 65.96881 * 10 9 8 33 33 H 0.96996 * 120.00064 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.63185 * 68.25003 * 20 11 10 35 35 H 1.08998 * 109.62646 * 188.83355 * 20 11 10 36 36 H 1.09000 * 109.49497 * 292.70822 * 21 8 7 37 37 H 1.09005 * 109.49279 * 52.75985 * 21 8 7 38 38 H 1.07991 * 120.09115 * 180.27008 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.5959 -1.0499 5 6 4.6489 -0.5920 -1.0452 6 6 5.3390 0.0017 -0.0035 7 6 6.8460 0.0024 -0.0059 8 7 7.3346 1.3425 -0.3569 9 6 8.7831 1.3275 -0.6012 10 6 9.2818 2.7648 -0.7846 11 7 8.4801 3.4067 -1.8375 12 6 9.0823 4.0465 -2.8877 13 1 10.0673 3.7438 -3.2114 14 6 8.4245 5.0801 -3.5402 15 7 7.3981 5.6724 -2.9672 16 14 8.9959 5.6307 -5.2313 17 1 8.2814 4.8506 -6.2734 18 1 8.7027 7.0758 -5.4067 19 1 10.4579 5.4033 -5.3581 20 6 7.0144 3.3485 -1.7291 21 6 6.6050 1.8831 -1.5116 22 6 4.6506 0.5913 1.0445 23 9 5.3313 1.1647 2.0608 24 6 3.2686 0.5983 1.0490 25 1 2.7328 -1.0599 -1.8643 26 1 5.1915 -1.0529 -1.8573 27 1 7.2085 -0.7197 -0.7376 28 1 7.2110 -0.2695 0.9845 29 1 8.9940 0.7516 -1.5023 30 1 9.2907 0.8721 0.2491 31 1 10.3312 2.7535 -1.0790 32 1 9.1692 3.3164 0.1489 33 1 6.9387 6.3949 -3.4230 34 1 6.6855 3.9531 -0.8839 35 1 6.5642 3.7233 -2.6482 36 1 6.8462 1.2994 -2.4000 37 1 5.5330 1.8303 -1.3217 38 1 2.7321 1.0616 1.8637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103882424.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:43 Heat of formation + Delta-G solvation = 29.366555 kcal Electronic energy + Delta-G solvation = -22597.470949 eV Core-core repulsion = 19161.732342 eV Total energy + Delta-G solvation = -3435.738607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.79429 -40.71504 -39.36641 -37.61382 -36.22297 -33.79230 -32.31764 -31.64264 -31.54428 -28.98236 -26.71308 -24.66695 -24.20334 -23.92160 -22.64896 -20.74998 -20.27241 -18.70191 -17.66838 -17.14404 -16.99438 -16.86086 -16.59590 -15.98557 -15.55663 -15.30741 -15.12713 -15.00202 -14.97210 -14.86425 -14.65282 -14.53549 -14.00828 -13.65118 -13.29839 -13.19963 -12.91376 -12.77561 -12.67696 -12.57505 -12.26001 -12.18043 -12.01821 -11.83478 -11.55289 -11.38044 -10.56601 -10.03261 -9.70398 -9.17085 -8.65050 -7.85181 -5.30272 -0.42857 0.17075 1.48752 1.49445 1.51844 1.58717 1.75860 2.52819 2.62112 2.70743 3.14609 3.30553 3.38982 3.61520 3.72743 3.75070 3.97431 4.20307 4.32380 4.41271 4.48279 4.52741 4.63634 4.68466 4.73645 4.83680 4.93025 4.95606 5.04029 5.08905 5.17676 5.23760 5.29551 5.40813 5.63928 5.71853 5.73082 6.21847 6.28556 6.34756 6.40140 7.15776 7.86903 8.41044 9.21347 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.004299 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.843388 B = 6511.307788 C = 7307.322247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.282 3.718 3 C -0.009 4.009 4 C -0.066 4.066 5 C -0.082 4.082 6 C -0.089 4.089 7 C 0.090 3.910 8 N -0.541 5.541 9 C 0.058 3.942 10 C 0.142 3.858 11 N -0.614 5.614 12 C -0.263 4.263 13 H 0.069 0.931 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.967 3.033 17 H -0.284 1.284 18 H -0.297 1.297 19 H -0.268 1.268 20 C 0.186 3.814 21 C 0.056 3.944 22 C 0.103 3.897 23 F -0.137 7.137 24 C -0.107 4.107 25 H 0.166 0.834 26 H 0.165 0.835 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.011 0.989 33 H 0.249 0.751 34 H -0.010 1.010 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 -16.923 5.573 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.033 4.033 3 C -0.012 4.012 4 C -0.086 4.086 5 C -0.101 4.101 6 C -0.091 4.091 7 C -0.037 4.037 8 N -0.266 5.266 9 C -0.071 4.071 10 C 0.017 3.983 11 N -0.338 5.338 12 C -0.393 4.393 13 H 0.087 0.913 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.795 3.205 17 H -0.210 1.210 18 H -0.224 1.224 19 H -0.193 1.193 20 C 0.060 3.940 21 C -0.073 4.073 22 C 0.083 3.917 23 F -0.115 7.115 24 C -0.128 4.128 25 H 0.184 0.816 26 H 0.182 0.818 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.008 0.992 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.229 -16.463 5.959 18.583 hybrid contribution 0.788 0.686 -1.067 1.493 sum -5.442 -15.777 4.892 17.391 Atomic orbital electron populations 1.81294 1.13119 1.09749 1.08840 1.25623 0.92442 0.92567 0.92635 1.15654 0.83576 1.04264 0.97732 1.21469 0.93930 0.96362 0.96842 1.21191 0.93671 0.97943 0.97263 1.20264 0.96732 0.97983 0.94132 1.21164 0.89418 0.90181 1.02905 1.62030 1.04462 1.22093 1.38033 1.22449 0.87502 0.97095 1.00052 1.21140 0.94668 0.92108 0.90416 1.44447 1.01808 1.63383 1.24182 1.19560 1.02326 1.10571 1.06839 0.91313 1.25781 0.99499 0.96389 1.02902 1.70201 1.25216 1.24981 1.37936 0.85268 0.78366 0.76497 0.80327 1.21030 1.22422 1.19278 1.20700 0.83632 0.91748 0.97962 1.22624 0.97583 0.96372 0.90734 1.17376 0.89501 0.97752 0.87044 1.91528 1.80075 1.82374 1.57566 1.21169 0.92056 0.99936 0.99667 0.81617 0.81768 0.91470 0.88769 0.94840 0.88621 0.92060 0.97146 0.94165 0.99187 0.92672 0.95292 0.90629 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.40 18.54 19.00 0.35 -11.05 16 2 C 0.28 5.68 15.33 88.33 1.35 7.03 16 3 C -0.01 -0.14 5.73 -21.37 -0.12 -0.27 16 4 C -0.07 -0.87 9.75 22.54 0.22 -0.65 16 5 C -0.08 -1.21 9.00 22.22 0.20 -1.01 16 6 C -0.09 -1.78 3.47 -19.76 -0.07 -1.85 16 7 C 0.09 1.96 5.08 85.56 0.43 2.39 16 8 N -0.54 -16.86 4.77 -898.86 -4.29 -21.15 16 9 C 0.06 1.81 5.58 86.38 0.48 2.29 16 10 C 0.14 5.84 6.69 86.35 0.58 6.41 16 11 N -0.61 -30.91 3.03 -697.23 -2.11 -33.03 16 12 C -0.26 -14.39 9.63 84.03 0.81 -13.58 16 13 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 14 C -0.05 -2.81 4.93 84.86 0.42 -2.39 16 15 N -0.94 -55.78 11.16 21.65 0.24 -55.54 16 16 Si 0.97 44.48 29.59 68.60 2.03 46.51 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C 0.19 9.02 5.45 86.50 0.47 9.49 16 21 C 0.06 2.00 5.12 86.54 0.44 2.44 16 22 C 0.10 2.27 7.24 22.34 0.16 2.44 16 23 F -0.14 -3.66 16.73 44.97 0.75 -2.91 16 24 C -0.11 -1.98 9.74 22.59 0.22 -1.76 16 25 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 26 H 0.16 1.70 7.99 -2.91 -0.02 1.67 16 27 H 0.07 1.21 7.88 -2.38 -0.02 1.19 16 28 H 0.09 1.91 8.07 -2.39 -0.02 1.89 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 2.40 8.11 -2.39 -0.02 2.38 16 31 H 0.06 2.39 7.95 -2.39 -0.02 2.37 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 34 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.05 3.01 6.12 -2.39 -0.01 3.00 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 2.46 6.11 -2.38 -0.01 2.45 16 38 H 0.15 2.46 8.06 -2.92 -0.02 2.43 16 Total: -1.00 -68.19 324.99 3.65 -64.54 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.07 Total: 1.62 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 5.60 Total: 11.00 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -5.81 Total: -120.76 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.75 Total: -2.91 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.19 3.65 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882424.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.910 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds