Wall clock time and date at job start Tue Mar 31 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39788 * 120.07228 * 63.30362 * 3 2 1 5 5 C 1.37690 * 119.96170 * 179.97438 * 4 3 2 6 6 C 1.39099 * 120.10241 * 0.02562 * 5 4 3 7 7 N 1.39345 * 119.92793 * 180.27902 * 6 5 4 8 8 C 1.46494 * 119.99873 * 359.72524 * 7 6 5 9 9 C 1.53039 * 109.46312 * 275.06425 * 8 7 6 10 10 C 1.53189 * 109.31492 * 178.61441 * 9 8 7 11 11 N 1.46926 * 108.77379 * 54.63690 * 10 9 8 12 12 C 1.36940 * 120.62981 * 126.36840 * 11 10 9 13 13 H 1.08004 * 119.99972 * 331.86183 * 12 11 10 14 14 C 1.38806 * 120.00075 * 151.86286 * 12 11 10 15 15 N 1.31626 * 120.00307 * 343.06954 * 14 12 11 16 16 Si 1.86796 * 120.00217 * 163.06706 * 14 12 11 17 17 H 1.48503 * 109.47388 * 89.99997 * 16 14 12 18 18 H 1.48499 * 109.47557 * 210.00274 * 16 14 12 19 19 H 1.48501 * 109.47191 * 330.00100 * 16 14 12 20 20 C 1.46929 * 118.74087 * 306.39105 * 11 10 9 21 21 C 1.53049 * 109.45915 * 154.99759 * 8 7 6 22 22 C 1.39342 * 120.14013 * 0.02562 * 6 5 4 23 23 F 1.35105 * 119.97887 * 179.97438 * 22 6 5 24 24 C 1.37829 * 120.03904 * 359.97438 * 22 6 5 25 25 H 1.08001 * 120.01621 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.95171 * 180.02562 * 5 4 3 27 27 H 0.97000 * 119.99490 * 179.72720 * 7 6 5 28 28 H 1.09001 * 109.46189 * 35.03116 * 8 7 6 29 29 H 1.08992 * 109.49676 * 298.57345 * 9 8 7 30 30 H 1.09001 * 109.49043 * 58.66590 * 9 8 7 31 31 H 1.09001 * 109.58918 * 294.85543 * 10 9 8 32 32 H 1.08998 * 109.70648 * 174.49250 * 10 9 8 33 33 H 0.96993 * 120.00327 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.58662 * 293.82285 * 20 11 10 35 35 H 1.09000 * 109.70453 * 173.46357 * 20 11 10 36 36 H 1.08996 * 109.49612 * 301.34358 * 21 8 7 37 37 H 1.09008 * 109.49207 * 61.40042 * 21 8 7 38 38 H 1.07999 * 120.05411 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2688 -0.5425 -1.0808 5 6 4.6457 -0.5402 -1.0786 6 6 5.3407 0.0013 -0.0023 7 7 6.7342 0.0070 -0.0066 8 6 7.4655 -0.5624 -1.1410 9 6 7.6169 -2.0725 -0.9440 10 6 8.3515 -2.6696 -2.1484 11 7 9.6220 -1.9543 -2.3294 12 6 10.8056 -2.6401 -2.3946 13 1 10.9090 -3.5882 -1.8878 14 6 11.8724 -2.1166 -3.1121 15 7 11.6677 -1.1576 -3.9901 16 14 13.5985 -2.7731 -2.8314 17 1 13.8539 -3.9059 -3.7571 18 1 14.5861 -1.6937 -3.0858 19 1 13.7279 -3.2416 -1.4282 20 6 9.5987 -0.4893 -2.4386 21 6 8.8501 0.0833 -1.2310 22 6 4.6466 0.5429 1.0777 23 9 5.3250 1.0676 2.1216 24 6 3.2683 0.5437 1.0816 25 1 2.7304 -0.9637 -1.9169 26 1 5.1869 -0.9596 -1.9139 27 1 7.2198 0.3880 0.7417 28 1 6.9146 -0.3699 -2.0617 29 1 8.1890 -2.2654 -0.0366 30 1 6.6307 -2.5286 -0.8567 31 1 7.7385 -2.5574 -3.0427 32 1 8.5493 -3.7267 -1.9712 33 1 12.4131 -0.7921 -4.4917 34 1 9.0874 -0.1994 -3.3565 35 1 10.6188 -0.1054 -2.4517 36 1 8.7418 1.1616 -1.3478 37 1 9.4105 -0.1295 -0.3205 38 1 2.7300 0.9630 1.9188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824735.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:48 Heat of formation + Delta-G solvation = 29.299052 kcal Electronic energy + Delta-G solvation = -22111.438642 eV Core-core repulsion = 18675.697108 eV Total energy + Delta-G solvation = -3435.741534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.92775 -39.79767 -38.08656 -36.55807 -35.12210 -32.59587 -30.96849 -30.74569 -29.87514 -28.67503 -25.25492 -23.41464 -23.27961 -22.21310 -21.49981 -19.60783 -19.15555 -17.62758 -16.94214 -16.69592 -16.12883 -15.78136 -15.08151 -14.79841 -14.36855 -14.07460 -13.99948 -13.86079 -13.68145 -13.50307 -13.40820 -13.08000 -12.68043 -12.50719 -12.31415 -12.15418 -11.72069 -11.51288 -11.19139 -10.93250 -10.81291 -10.76762 -10.47032 -10.25642 -9.99876 -9.72207 -9.68108 -9.14442 -8.57558 -7.55480 -6.80285 -5.89763 -3.32363 0.70900 0.99774 2.55431 2.78225 3.21525 3.31712 3.39085 3.40930 3.66332 3.72930 4.13462 4.41283 4.53639 4.76777 5.02553 5.08730 5.21801 5.31878 5.33848 5.41015 5.55299 5.61214 5.77515 5.88931 5.93212 6.07567 6.11490 6.23066 6.31119 6.35156 6.45124 6.51804 6.64193 6.81507 7.10396 7.18917 7.39400 7.47783 7.55398 7.70611 8.34215 9.10304 9.73201 10.28756 11.19278 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035118 B = 0.003219 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.123551 B = 8695.854455 C = 9080.681613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.269 3.731 3 C -0.087 4.087 4 C -0.020 4.020 5 C -0.184 4.184 6 C 0.235 3.765 7 N -0.720 5.720 8 C 0.150 3.850 9 C -0.146 4.146 10 C 0.147 3.853 11 N -0.592 5.592 12 C -0.255 4.255 13 H 0.066 0.934 14 C 0.004 3.996 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.174 3.826 21 C -0.147 4.147 22 C 0.005 3.995 23 F -0.140 7.140 24 C -0.052 4.052 25 H 0.136 0.864 26 H 0.146 0.854 27 H 0.404 0.596 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.255 0.745 34 H 0.022 0.978 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 3.451 7.418 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.046 4.046 3 C -0.094 4.094 4 C -0.042 4.042 5 C -0.207 4.207 6 C 0.124 3.876 7 N -0.342 5.342 8 C 0.047 3.953 9 C -0.187 4.187 10 C 0.020 3.980 11 N -0.315 5.315 12 C -0.385 4.385 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.205 1.205 20 C 0.048 3.952 21 C -0.187 4.187 22 C -0.019 4.019 23 F -0.119 7.119 24 C -0.074 4.074 25 H 0.154 0.846 26 H 0.163 0.837 27 H 0.239 0.761 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.406 3.459 7.164 15.589 hybrid contribution 1.691 -0.014 0.635 1.806 sum -11.715 3.445 7.799 14.489 Atomic orbital electron populations 1.81247 1.12116 1.09957 1.08049 1.25565 0.92430 0.93108 0.93479 1.15392 0.84238 1.11420 0.98336 1.20946 0.93360 0.93875 0.95972 1.20608 0.93597 1.07205 0.99253 1.18174 0.85161 0.91864 0.92445 1.45337 1.01760 1.63253 1.23887 1.21219 0.93024 0.93552 0.87540 1.22518 1.00040 0.94616 1.01484 1.20882 0.88004 0.95765 0.93390 1.44081 1.01414 1.01262 1.84718 1.19163 0.88935 1.04895 1.25495 0.91636 1.25051 0.99192 0.99309 0.95946 1.70008 1.30402 1.29841 1.24438 0.86308 0.84408 0.78062 0.78055 1.21308 1.21513 1.20470 1.20747 1.00198 0.83351 0.90920 1.22543 0.94216 0.98862 1.03111 1.16789 0.89476 1.08374 0.87288 1.91470 1.79880 1.85028 1.55497 1.20762 0.91651 0.97090 0.97870 0.84568 0.83657 0.76098 0.90227 0.91894 0.92568 0.96235 0.92385 0.93507 0.96011 0.88941 0.92528 0.92037 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.72 18.54 41.84 0.78 -4.94 16 2 C 0.27 2.91 15.33 -22.47 -0.34 2.56 16 3 C -0.09 -0.81 5.74 -106.80 -0.61 -1.43 16 4 C -0.02 -0.17 9.74 -39.20 -0.38 -0.55 16 5 C -0.18 -1.80 8.81 -39.46 -0.35 -2.15 16 6 C 0.24 2.57 6.64 -83.71 -0.56 2.02 16 7 N -0.72 -8.53 5.23 -52.05 -0.27 -8.80 16 8 C 0.15 2.08 2.11 -67.89 -0.14 1.94 16 9 C -0.15 -2.18 5.58 -26.61 -0.15 -2.33 16 10 C 0.15 2.73 6.52 -3.71 -0.02 2.70 16 11 N -0.59 -13.55 2.99 -172.32 -0.52 -14.07 16 12 C -0.26 -6.60 9.58 -15.06 -0.14 -6.74 16 13 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 14 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 15 N -0.90 -24.87 11.19 55.49 0.62 -24.25 16 16 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.17 3.73 5.30 -3.71 -0.02 3.71 16 21 C -0.15 -2.40 5.55 -26.61 -0.15 -2.55 16 22 C 0.00 0.05 7.30 -39.32 -0.29 -0.24 16 23 F -0.14 -1.59 16.62 2.25 0.04 -1.56 16 24 C -0.05 -0.47 9.72 -39.14 -0.38 -0.86 16 25 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 26 H 0.15 1.40 6.10 -52.48 -0.32 1.08 16 27 H 0.40 4.61 8.07 -40.82 -0.33 4.28 16 28 H 0.08 1.09 6.46 -51.93 -0.34 0.76 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.73 7.72 -51.93 -0.40 0.33 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 33 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -28.06 323.69 -7.75 -35.81 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.62 Total: 1.10 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.62 Total: -3.89 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.61 Total: -52.06 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.06 -7.75 -35.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824735.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.108 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds