Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39788 * 120.07228 * 63.30362 * 3 2 1 5 5 C 1.37690 * 119.96170 * 179.97438 * 4 3 2 6 6 C 1.39099 * 120.10241 * 0.02562 * 5 4 3 7 7 N 1.39345 * 119.92793 * 180.27902 * 6 5 4 8 8 C 1.46494 * 119.99873 * 359.72524 * 7 6 5 9 9 C 1.53039 * 109.46312 * 275.06425 * 8 7 6 10 10 C 1.53189 * 109.31492 * 178.61441 * 9 8 7 11 11 N 1.46926 * 108.77379 * 54.63690 * 10 9 8 12 12 C 1.36940 * 120.62981 * 126.36840 * 11 10 9 13 13 H 1.08004 * 119.99972 * 331.86183 * 12 11 10 14 14 C 1.38806 * 120.00075 * 151.86286 * 12 11 10 15 15 N 1.31626 * 120.00307 * 343.06954 * 14 12 11 16 16 Si 1.86796 * 120.00217 * 163.06706 * 14 12 11 17 17 H 1.48503 * 109.47388 * 89.99997 * 16 14 12 18 18 H 1.48499 * 109.47557 * 210.00274 * 16 14 12 19 19 H 1.48501 * 109.47191 * 330.00100 * 16 14 12 20 20 C 1.46929 * 118.74087 * 306.39105 * 11 10 9 21 21 C 1.53049 * 109.45915 * 154.99759 * 8 7 6 22 22 C 1.39342 * 120.14013 * 0.02562 * 6 5 4 23 23 F 1.35105 * 119.97887 * 179.97438 * 22 6 5 24 24 C 1.37829 * 120.03904 * 359.97438 * 22 6 5 25 25 H 1.08001 * 120.01621 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.95171 * 180.02562 * 5 4 3 27 27 H 0.97000 * 119.99490 * 179.72720 * 7 6 5 28 28 H 1.09001 * 109.46189 * 35.03116 * 8 7 6 29 29 H 1.08992 * 109.49676 * 298.57345 * 9 8 7 30 30 H 1.09001 * 109.49043 * 58.66590 * 9 8 7 31 31 H 1.09001 * 109.58918 * 294.85543 * 10 9 8 32 32 H 1.08998 * 109.70648 * 174.49250 * 10 9 8 33 33 H 0.96993 * 120.00327 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.58662 * 293.82285 * 20 11 10 35 35 H 1.09000 * 109.70453 * 173.46357 * 20 11 10 36 36 H 1.08996 * 109.49612 * 301.34358 * 21 8 7 37 37 H 1.09008 * 109.49207 * 61.40042 * 21 8 7 38 38 H 1.07999 * 120.05411 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2688 -0.5425 -1.0808 5 6 4.6457 -0.5402 -1.0786 6 6 5.3407 0.0013 -0.0023 7 7 6.7342 0.0070 -0.0066 8 6 7.4655 -0.5624 -1.1410 9 6 7.6169 -2.0725 -0.9440 10 6 8.3515 -2.6696 -2.1484 11 7 9.6220 -1.9543 -2.3294 12 6 10.8056 -2.6401 -2.3946 13 1 10.9090 -3.5882 -1.8878 14 6 11.8724 -2.1166 -3.1121 15 7 11.6677 -1.1576 -3.9901 16 14 13.5985 -2.7731 -2.8314 17 1 13.8539 -3.9059 -3.7571 18 1 14.5861 -1.6937 -3.0858 19 1 13.7279 -3.2416 -1.4282 20 6 9.5987 -0.4893 -2.4386 21 6 8.8501 0.0833 -1.2310 22 6 4.6466 0.5429 1.0777 23 9 5.3250 1.0676 2.1216 24 6 3.2683 0.5437 1.0816 25 1 2.7304 -0.9637 -1.9169 26 1 5.1869 -0.9596 -1.9139 27 1 7.2198 0.3880 0.7417 28 1 6.9146 -0.3699 -2.0617 29 1 8.1890 -2.2654 -0.0366 30 1 6.6307 -2.5286 -0.8567 31 1 7.7385 -2.5574 -3.0427 32 1 8.5493 -3.7267 -1.9712 33 1 12.4131 -0.7921 -4.4917 34 1 9.0874 -0.1994 -3.3565 35 1 10.6188 -0.1054 -2.4517 36 1 8.7418 1.1616 -1.3478 37 1 9.4105 -0.1295 -0.3205 38 1 2.7300 0.9630 1.9188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110824735.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = 14.627811 kcal Electronic energy + Delta-G solvation = -22112.074834 eV Core-core repulsion = 18675.697108 eV Total energy + Delta-G solvation = -3436.377727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.75137 -40.68715 -39.29785 -37.59706 -36.34332 -34.17406 -32.18936 -31.71935 -31.33330 -29.80387 -26.86178 -24.60151 -24.22664 -23.51154 -22.78882 -20.91006 -20.06780 -18.90100 -18.22148 -17.70895 -16.98560 -16.78406 -16.60192 -15.99634 -15.61833 -15.31559 -14.96338 -14.89334 -14.84566 -14.74901 -14.62677 -14.38239 -13.87066 -13.53894 -13.40012 -13.15349 -13.03102 -12.92366 -12.66609 -12.54348 -12.29473 -12.01589 -11.98386 -11.84051 -11.60646 -11.25932 -10.88867 -10.51795 -9.88414 -8.66719 -8.44070 -7.87034 -5.30817 -0.07994 0.26324 1.47567 1.50188 1.58569 1.70106 1.95592 2.26473 2.52755 2.88211 2.90304 3.29756 3.35367 3.71310 3.78589 3.93521 4.07121 4.09652 4.24697 4.34251 4.50332 4.56104 4.70879 4.76971 4.86448 4.98878 5.00755 5.09657 5.13448 5.18977 5.21925 5.35261 5.40068 5.53459 5.66017 5.67265 5.76737 6.17607 6.41639 6.55276 6.63396 7.17467 7.88958 8.38467 9.19553 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035118 B = 0.003219 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.123551 B = 8695.854455 C = 9080.681613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.291 3.709 3 C -0.085 4.085 4 C -0.008 4.008 5 C -0.185 4.185 6 C 0.226 3.774 7 N -0.720 5.720 8 C 0.165 3.835 9 C -0.131 4.131 10 C 0.142 3.858 11 N -0.611 5.611 12 C -0.261 4.261 13 H 0.064 0.936 14 C -0.048 4.048 15 N -0.933 5.933 16 Si 0.961 3.039 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.273 1.273 20 C 0.180 3.820 21 C -0.133 4.133 22 C -0.003 4.003 23 F -0.147 7.147 24 C -0.043 4.043 25 H 0.159 0.841 26 H 0.150 0.850 27 H 0.406 0.594 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.250 0.750 34 H 0.005 0.995 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 3.258 8.316 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.022 4.022 3 C -0.092 4.092 4 C -0.029 4.029 5 C -0.208 4.208 6 C 0.116 3.884 7 N -0.344 5.344 8 C 0.060 3.940 9 C -0.172 4.172 10 C 0.016 3.984 11 N -0.335 5.335 12 C -0.392 4.392 13 H 0.082 0.918 14 C -0.243 4.243 15 N -0.579 5.579 16 Si 0.790 3.210 17 H -0.213 1.213 18 H -0.220 1.220 19 H -0.198 1.198 20 C 0.053 3.947 21 C -0.173 4.173 22 C -0.027 4.027 23 F -0.126 7.126 24 C -0.065 4.065 25 H 0.177 0.823 26 H 0.168 0.832 27 H 0.242 0.758 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.856 3.260 8.092 17.228 hybrid contribution 2.033 0.028 0.359 2.065 sum -12.823 3.287 8.451 15.705 Atomic orbital electron populations 1.81283 1.13339 1.11416 1.09395 1.25649 0.92416 0.91908 0.92261 1.15406 0.83380 1.11650 0.98730 1.21156 0.92965 0.92617 0.96144 1.20702 0.94008 1.07116 0.98998 1.18307 0.84566 0.92416 0.93066 1.45014 1.02172 1.63883 1.23352 1.20862 0.91816 0.92560 0.88721 1.22327 1.00569 0.95378 0.98893 1.21037 0.86627 0.95502 0.95186 1.44342 1.02184 1.02005 1.84968 1.19464 0.90353 1.04833 1.24510 0.91793 1.25717 1.02314 1.00083 0.96230 1.70148 1.30812 1.31299 1.25619 0.85377 0.80482 0.77155 0.78027 1.21273 1.21981 1.19755 1.20529 0.98626 0.82988 0.92514 1.22264 0.95165 0.99719 1.00151 1.16868 0.89852 1.08822 0.87159 1.91457 1.80079 1.85207 1.55813 1.20899 0.91193 0.96218 0.98208 0.82317 0.83199 0.75832 0.89483 0.92928 0.89854 0.95728 0.92837 0.94101 0.97685 0.92670 0.90882 0.92591 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.68 18.54 19.01 0.35 -11.33 16 2 C 0.29 5.60 15.33 88.33 1.35 6.95 16 3 C -0.09 -1.32 5.74 -21.27 -0.12 -1.44 16 4 C -0.01 -0.10 9.74 22.52 0.22 0.12 16 5 C -0.19 -3.01 8.81 22.35 0.20 -2.81 16 6 C 0.23 4.31 6.64 38.42 0.26 4.57 16 7 N -0.72 -15.32 5.23 -318.58 -1.67 -16.98 16 8 C 0.16 4.22 2.11 45.02 0.09 4.32 16 9 C -0.13 -3.64 5.58 30.67 0.17 -3.47 16 10 C 0.14 5.15 6.52 86.36 0.56 5.72 16 11 N -0.61 -28.16 2.99 -699.11 -2.09 -30.25 16 12 C -0.26 -13.65 9.58 84.03 0.81 -12.84 16 13 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 14 C -0.05 -2.56 4.92 84.86 0.42 -2.15 16 15 N -0.93 -52.81 11.19 21.65 0.24 -52.57 16 16 Si 0.96 43.31 29.59 68.60 2.03 45.34 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C 0.18 7.81 5.30 86.36 0.46 8.27 16 21 C -0.13 -4.23 5.55 30.67 0.17 -4.06 16 22 C 0.00 -0.06 7.30 22.44 0.16 0.11 16 23 F -0.15 -3.03 16.62 44.97 0.75 -2.29 16 24 C -0.04 -0.67 9.72 22.56 0.22 -0.45 16 25 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 26 H 0.15 2.35 6.10 -2.91 -0.02 2.33 16 27 H 0.41 8.42 8.07 -92.71 -0.75 7.68 16 28 H 0.09 2.16 6.46 -2.39 -0.02 2.14 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.89 7.72 -2.39 -0.02 1.87 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 33 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -61.15 323.69 4.93 -56.22 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.35 Total: 9.04 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 4.97 Total: 2.82 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -3.16 Total: -111.13 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.75 Total: -2.29 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -61.15 4.93 -56.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824735.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.845 kcal (2) G-P(sol) polarization free energy of solvation -61.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds