Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39749 * 120.19530 * 189.45207 * 3 2 1 5 5 C 1.37977 * 119.89075 * 180.27450 * 4 3 2 6 6 F 1.35109 * 119.84935 * 180.02562 * 5 4 3 7 7 C 1.38744 * 120.29976 * 0.02562 * 5 4 3 8 8 C 1.38026 * 120.39294 * 359.97438 * 7 5 4 9 9 C 1.38858 * 120.10083 * 0.02562 * 8 7 5 10 10 N 1.39155 * 120.14411 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00175 * 0.02562 * 10 9 8 12 12 C 1.53040 * 109.46197 * 275.06766 * 11 10 9 13 13 C 1.53191 * 109.31474 * 178.61695 * 12 11 10 14 14 N 1.46926 * 108.77166 * 54.63547 * 13 12 11 15 15 C 1.36943 * 120.62721 * 126.37564 * 14 13 12 16 16 H 1.08005 * 119.99888 * 331.85394 * 15 14 13 17 17 C 1.38809 * 120.00325 * 151.85926 * 15 14 13 18 18 N 1.31618 * 119.99481 * 343.05901 * 17 15 14 19 19 Si 1.86796 * 120.00445 * 163.05623 * 17 15 14 20 20 H 1.48500 * 109.46768 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46946 * 119.99886 * 19 17 15 22 22 H 1.48497 * 109.47458 * 240.00586 * 19 17 15 23 23 C 1.46919 * 118.74316 * 306.38834 * 14 13 12 24 24 C 1.53046 * 109.45862 * 155.00472 * 11 10 9 25 25 H 1.07996 * 120.05694 * 0.25131 * 4 3 2 26 26 H 1.08001 * 119.80488 * 179.97438 * 7 5 4 27 27 H 1.08005 * 119.95019 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99525 * 180.02562 * 10 9 8 29 29 H 1.08990 * 109.46368 * 35.02968 * 11 10 9 30 30 H 1.09001 * 109.49775 * 298.57032 * 12 11 10 31 31 H 1.09002 * 109.49637 * 58.66133 * 12 11 10 32 32 H 1.09001 * 109.58353 * 294.84589 * 13 12 11 33 33 H 1.09004 * 109.70174 * 174.49387 * 13 12 11 34 34 H 0.97003 * 120.00067 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.58927 * 293.83069 * 23 14 13 36 36 H 1.09002 * 109.70568 * 173.46990 * 23 14 13 37 37 H 1.09008 * 109.49372 * 301.33446 * 24 11 10 38 38 H 1.08994 * 109.50085 * 61.39750 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2703 1.1924 0.1984 5 6 4.6500 1.1868 0.1915 6 9 5.3282 2.3394 0.3839 7 6 5.3442 0.0028 -0.0120 8 6 4.6627 -1.1812 -0.2092 9 6 3.2742 -1.1944 -0.2055 10 7 2.5862 -2.3875 -0.4047 11 6 3.3268 -3.6333 -0.6183 12 6 3.6891 -3.7635 -2.0995 13 6 4.4931 -5.0499 -2.3133 14 7 3.7247 -6.1821 -1.7782 15 6 3.4572 -7.2749 -2.5590 16 1 3.3833 -7.1675 -3.6311 17 6 3.2810 -8.5206 -1.9725 18 7 3.6890 -8.7308 -0.7389 19 14 2.4648 -9.8986 -2.9338 20 1 2.1010 -9.4094 -4.2879 21 1 3.4056 -11.0410 -3.0569 22 1 1.2393 -10.3410 -2.2212 23 6 3.2485 -6.1196 -0.3897 24 6 2.4585 -4.8212 -0.1975 25 1 2.7340 2.1164 0.3564 26 1 6.4242 0.0076 -0.0163 27 1 5.2103 -2.0986 -0.3674 28 1 1.6162 -2.3942 -0.4021 29 1 4.2387 -3.6206 -0.0215 30 1 2.7770 -3.8013 -2.6952 31 1 4.2879 -2.9053 -2.4044 32 1 5.4467 -4.9758 -1.7907 33 1 4.6707 -5.1995 -3.3784 34 1 3.5656 -9.6011 -0.3289 35 1 4.1007 -6.1327 0.2898 36 1 2.6035 -6.9737 -0.1835 37 1 2.1815 -4.7158 0.8515 38 1 1.5577 -4.8488 -0.8106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111026435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = 29.307722 kcal Electronic energy + Delta-G solvation = -22179.274132 eV Core-core repulsion = 18743.532974 eV Total energy + Delta-G solvation = -3435.741158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.85851 -40.04183 -37.89178 -36.45361 -35.14606 -32.53894 -31.63465 -30.61346 -29.77025 -28.19292 -25.06315 -24.43056 -22.77022 -22.30877 -21.27924 -19.77408 -19.06397 -17.55982 -16.92568 -16.57802 -16.26440 -15.65669 -15.11116 -14.87060 -14.47907 -14.26715 -13.93157 -13.71722 -13.58387 -13.34455 -13.33408 -13.05954 -12.96113 -12.57637 -12.31419 -12.28488 -11.63769 -11.44404 -11.19408 -10.90782 -10.81945 -10.72729 -10.46495 -10.20810 -9.98404 -9.71719 -9.63421 -9.32685 -8.57580 -7.53743 -6.80273 -5.89412 -3.32151 0.56552 1.16378 2.50905 2.75986 3.22191 3.31912 3.40152 3.41852 3.64126 3.68544 4.29387 4.41649 4.53581 4.71598 5.04882 5.05470 5.19554 5.29976 5.34012 5.39794 5.49238 5.61172 5.77962 5.88704 5.89121 6.01181 6.11194 6.26154 6.30858 6.34971 6.46048 6.56177 6.64187 6.81463 7.09316 7.19056 7.36418 7.47281 7.53306 7.71413 8.34441 9.10608 9.73464 10.28921 11.19530 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028251 B = 0.003488 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.891375 B = 8025.416539 C = 8599.619672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.261 3.739 3 C -0.103 4.103 4 C -0.054 4.054 5 C 0.024 3.976 6 F -0.144 7.144 7 C -0.067 4.067 8 C -0.172 4.172 9 C 0.271 3.729 10 N -0.722 5.722 11 C 0.149 3.851 12 C -0.146 4.146 13 C 0.147 3.853 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.175 3.825 24 C -0.148 4.148 25 H 0.140 0.860 26 H 0.141 0.859 27 H 0.147 0.853 28 H 0.399 0.601 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.254 0.746 35 H 0.022 0.978 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 16.577 2.566 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.053 4.053 3 C -0.113 4.113 4 C -0.076 4.076 5 C 0.002 3.998 6 F -0.123 7.123 7 C -0.088 4.088 8 C -0.195 4.195 9 C 0.158 3.842 10 N -0.344 5.344 11 C 0.046 3.954 12 C -0.187 4.187 13 C 0.020 3.980 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.048 3.952 24 C -0.188 4.188 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.164 0.836 28 H 0.234 0.766 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.228 16.209 2.614 16.465 hybrid contribution -0.283 -0.510 -0.373 0.692 sum 0.945 15.699 2.241 15.887 Atomic orbital electron populations 1.81277 1.11843 1.06742 1.10367 1.25427 0.92359 0.94193 0.93322 1.15124 0.84287 0.93318 1.18555 1.20752 0.92408 0.97302 0.97143 1.17068 0.89326 0.82435 1.10938 1.91486 1.79930 1.47335 1.93543 1.21130 1.00965 0.90651 0.96032 1.20626 0.91360 0.99189 1.08279 1.17845 0.91649 0.85134 0.89571 1.45412 1.08815 1.05244 1.74921 1.21236 0.95432 0.81841 0.96902 1.22526 1.01393 0.99475 0.95292 1.20883 0.92453 0.86634 0.98056 1.44085 1.60220 1.16542 1.10625 1.19225 1.42959 0.85610 0.90686 0.91557 1.25049 1.00426 0.97107 0.96895 1.70019 1.47870 1.22653 1.14088 0.86233 0.79058 0.82077 0.79462 1.20222 1.21634 1.21521 1.20744 0.95952 0.93133 0.85350 1.22551 0.99639 0.96792 0.99839 0.84259 0.84141 0.83580 0.76579 0.90082 0.91920 0.92500 0.96192 0.92364 0.93572 0.95957 0.88951 0.92538 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.11 18.54 41.83 0.78 -5.34 16 2 C 0.26 3.23 14.09 -22.47 -0.32 2.91 16 3 C -0.10 -1.10 5.76 -106.62 -0.61 -1.72 16 4 C -0.05 -0.51 9.73 -39.11 -0.38 -0.89 16 5 C 0.02 0.23 7.28 -39.49 -0.29 -0.06 16 6 F -0.14 -1.48 17.26 2.25 0.04 -1.44 16 7 C -0.07 -0.59 10.00 -39.47 -0.39 -0.98 16 8 C -0.17 -1.69 8.82 -39.43 -0.35 -2.04 16 9 C 0.27 3.00 6.64 -83.52 -0.55 2.45 16 10 N -0.72 -8.90 5.16 -51.90 -0.27 -9.16 16 11 C 0.15 2.11 2.11 -67.89 -0.14 1.97 16 12 C -0.15 -2.21 5.58 -26.61 -0.15 -2.36 16 13 C 0.15 2.75 6.52 -3.71 -0.02 2.72 16 14 N -0.59 -13.68 2.99 -172.32 -0.52 -14.20 16 15 C -0.26 -6.66 9.58 -15.06 -0.14 -6.80 16 16 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 17 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 18 N -0.90 -25.01 11.19 55.49 0.62 -24.39 16 19 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.17 3.79 5.30 -3.71 -0.02 3.77 16 24 C -0.15 -2.49 5.55 -26.61 -0.15 -2.64 16 25 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 27 H 0.15 1.39 6.11 -52.48 -0.32 1.07 16 28 H 0.40 5.03 7.46 -40.82 -0.30 4.72 16 29 H 0.08 1.11 6.48 -51.93 -0.34 0.77 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.74 7.71 -51.93 -0.40 0.34 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 37 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -28.08 322.69 -7.72 -35.80 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.60 Total: 1.58 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.61 Total: -3.66 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.61 Total: -53.08 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.08 -7.72 -35.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111026435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.104 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds