Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39749 * 120.19530 * 189.45207 * 3 2 1 5 5 C 1.37977 * 119.89075 * 180.27450 * 4 3 2 6 6 F 1.35109 * 119.84935 * 180.02562 * 5 4 3 7 7 C 1.38744 * 120.29976 * 0.02562 * 5 4 3 8 8 C 1.38026 * 120.39294 * 359.97438 * 7 5 4 9 9 C 1.38858 * 120.10083 * 0.02562 * 8 7 5 10 10 N 1.39155 * 120.14411 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00175 * 0.02562 * 10 9 8 12 12 C 1.53040 * 109.46197 * 275.06766 * 11 10 9 13 13 C 1.53191 * 109.31474 * 178.61695 * 12 11 10 14 14 N 1.46926 * 108.77166 * 54.63547 * 13 12 11 15 15 C 1.36943 * 120.62721 * 126.37564 * 14 13 12 16 16 H 1.08005 * 119.99888 * 331.85394 * 15 14 13 17 17 C 1.38809 * 120.00325 * 151.85926 * 15 14 13 18 18 N 1.31618 * 119.99481 * 343.05901 * 17 15 14 19 19 Si 1.86796 * 120.00445 * 163.05623 * 17 15 14 20 20 H 1.48500 * 109.46768 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46946 * 119.99886 * 19 17 15 22 22 H 1.48497 * 109.47458 * 240.00586 * 19 17 15 23 23 C 1.46919 * 118.74316 * 306.38834 * 14 13 12 24 24 C 1.53046 * 109.45862 * 155.00472 * 11 10 9 25 25 H 1.07996 * 120.05694 * 0.25131 * 4 3 2 26 26 H 1.08001 * 119.80488 * 179.97438 * 7 5 4 27 27 H 1.08005 * 119.95019 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99525 * 180.02562 * 10 9 8 29 29 H 1.08990 * 109.46368 * 35.02968 * 11 10 9 30 30 H 1.09001 * 109.49775 * 298.57032 * 12 11 10 31 31 H 1.09002 * 109.49637 * 58.66133 * 12 11 10 32 32 H 1.09001 * 109.58353 * 294.84589 * 13 12 11 33 33 H 1.09004 * 109.70174 * 174.49387 * 13 12 11 34 34 H 0.97003 * 120.00067 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.58927 * 293.83069 * 23 14 13 36 36 H 1.09002 * 109.70568 * 173.46990 * 23 14 13 37 37 H 1.09008 * 109.49372 * 301.33446 * 24 11 10 38 38 H 1.08994 * 109.50085 * 61.39750 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2703 1.1924 0.1984 5 6 4.6500 1.1868 0.1915 6 9 5.3282 2.3394 0.3839 7 6 5.3442 0.0028 -0.0120 8 6 4.6627 -1.1812 -0.2092 9 6 3.2742 -1.1944 -0.2055 10 7 2.5862 -2.3875 -0.4047 11 6 3.3268 -3.6333 -0.6183 12 6 3.6891 -3.7635 -2.0995 13 6 4.4931 -5.0499 -2.3133 14 7 3.7247 -6.1821 -1.7782 15 6 3.4572 -7.2749 -2.5590 16 1 3.3833 -7.1675 -3.6311 17 6 3.2810 -8.5206 -1.9725 18 7 3.6890 -8.7308 -0.7389 19 14 2.4648 -9.8986 -2.9338 20 1 2.1010 -9.4094 -4.2879 21 1 3.4056 -11.0410 -3.0569 22 1 1.2393 -10.3410 -2.2212 23 6 3.2485 -6.1196 -0.3897 24 6 2.4585 -4.8212 -0.1975 25 1 2.7340 2.1164 0.3564 26 1 6.4242 0.0076 -0.0163 27 1 5.2103 -2.0986 -0.3674 28 1 1.6162 -2.3942 -0.4021 29 1 4.2387 -3.6206 -0.0215 30 1 2.7770 -3.8013 -2.6952 31 1 4.2879 -2.9053 -2.4044 32 1 5.4467 -4.9758 -1.7907 33 1 4.6707 -5.1995 -3.3784 34 1 3.5656 -9.6011 -0.3289 35 1 4.1007 -6.1327 0.2898 36 1 2.6035 -6.9737 -0.1835 37 1 2.1815 -4.7158 0.8515 38 1 1.5577 -4.8488 -0.8106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111026435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = 14.565909 kcal Electronic energy + Delta-G solvation = -22179.913385 eV Core-core repulsion = 18743.532974 eV Total energy + Delta-G solvation = -3436.380411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.62763 -40.95294 -39.20729 -37.44914 -36.45235 -34.12979 -32.49113 -32.05128 -31.28001 -29.27729 -26.71997 -25.27299 -24.05838 -23.76017 -22.40631 -21.04916 -20.09168 -18.87320 -18.16830 -17.63691 -17.07647 -16.81696 -16.42719 -16.04339 -15.69039 -15.35272 -15.19759 -15.11519 -14.75983 -14.64417 -14.48735 -14.19390 -13.95416 -13.75893 -13.44614 -13.36490 -13.09213 -12.97741 -12.64104 -12.53902 -12.24203 -12.02597 -11.94346 -11.84402 -11.59986 -11.28610 -10.80352 -10.53798 -10.09095 -8.68374 -8.43281 -7.88514 -5.32337 -0.21554 0.38455 1.45292 1.48784 1.55774 1.57698 1.88855 2.23008 2.51132 2.80450 2.81646 3.28199 3.53661 3.69391 3.74624 3.90291 4.04580 4.04754 4.28032 4.31308 4.40068 4.49047 4.68741 4.75757 4.83241 4.95684 5.00789 5.07942 5.08691 5.14907 5.19958 5.28374 5.37288 5.51446 5.65819 5.71707 5.78445 6.13143 6.39988 6.43313 6.53310 7.15927 7.87423 8.36804 9.18046 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028251 B = 0.003488 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.891375 B = 8025.416539 C = 8599.619672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.280 3.720 3 C -0.107 4.107 4 C -0.048 4.048 5 C 0.022 3.978 6 F -0.147 7.147 7 C -0.054 4.054 8 C -0.173 4.173 9 C 0.264 3.736 10 N -0.724 5.724 11 C 0.164 3.836 12 C -0.132 4.132 13 C 0.143 3.857 14 N -0.611 5.611 15 C -0.261 4.261 16 H 0.064 0.936 17 C -0.047 4.047 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.181 3.819 24 C -0.135 4.135 25 H 0.155 0.845 26 H 0.166 0.834 27 H 0.154 0.846 28 H 0.398 0.602 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.028 0.972 33 H 0.054 0.946 34 H 0.250 0.750 35 H 0.008 0.992 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 18.555 2.323 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.034 4.034 3 C -0.117 4.117 4 C -0.069 4.069 5 C 0.001 3.999 6 F -0.126 7.126 7 C -0.075 4.075 8 C -0.195 4.195 9 C 0.153 3.847 10 N -0.347 5.347 11 C 0.060 3.940 12 C -0.172 4.172 13 C 0.017 3.983 14 N -0.335 5.335 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.242 4.242 18 N -0.578 5.578 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.055 3.945 24 C -0.175 4.175 25 H 0.173 0.827 26 H 0.183 0.817 27 H 0.171 0.829 28 H 0.232 0.768 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.176 18.245 2.362 18.526 hybrid contribution -0.475 -1.011 -0.294 1.155 sum 1.701 17.234 2.068 17.441 Atomic orbital electron populations 1.81295 1.13062 1.08053 1.11994 1.25648 0.92561 0.92999 0.92162 1.15118 0.83327 0.93776 1.19450 1.20886 0.92567 0.97406 0.96090 1.17186 0.89379 0.82610 1.10743 1.91489 1.79953 1.47591 1.93556 1.21371 1.02229 0.89749 0.94105 1.20725 0.90692 0.99897 1.08235 1.17954 0.92184 0.84504 0.90084 1.45116 1.08563 1.05028 1.76001 1.20903 0.95242 0.81603 0.96289 1.22342 1.00602 0.98398 0.95875 1.21045 0.92911 0.86694 0.97672 1.44338 1.61342 1.16992 1.10825 1.19510 1.41950 0.86685 0.91030 0.91795 1.25700 1.01559 0.99167 0.97813 1.70152 1.49426 1.22757 1.15418 0.85318 0.77761 0.79467 0.78573 1.19340 1.21905 1.21907 1.20511 0.95156 0.94230 0.84648 1.22283 0.98846 0.95649 1.00726 0.82712 0.81687 0.82887 0.76780 0.88892 0.93259 0.89496 0.95374 0.92779 0.94118 0.97358 0.92810 0.91050 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.06 18.54 19.00 0.35 -12.71 16 2 C 0.28 6.50 14.09 88.33 1.24 7.75 16 3 C -0.11 -2.03 5.76 -21.16 -0.12 -2.15 16 4 C -0.05 -0.75 9.73 22.57 0.22 -0.54 16 5 C 0.02 0.34 7.28 22.33 0.16 0.51 16 6 F -0.15 -2.55 17.26 44.97 0.78 -1.77 16 7 C -0.05 -0.74 10.00 22.34 0.22 -0.51 16 8 C -0.17 -2.77 8.82 22.37 0.20 -2.57 16 9 C 0.26 5.10 6.64 38.64 0.26 5.36 16 10 N -0.72 -16.26 5.16 -318.11 -1.64 -17.91 16 11 C 0.16 4.30 2.11 45.02 0.09 4.40 16 12 C -0.13 -3.71 5.58 30.67 0.17 -3.53 16 13 C 0.14 5.17 6.52 86.36 0.56 5.74 16 14 N -0.61 -28.42 2.99 -699.10 -2.09 -30.51 16 15 C -0.26 -13.79 9.58 84.03 0.81 -12.98 16 16 H 0.06 3.33 7.89 -2.91 -0.02 3.30 16 17 C -0.05 -2.52 4.92 84.86 0.42 -2.11 16 18 N -0.93 -53.06 11.19 21.65 0.24 -52.81 16 19 Si 0.96 43.81 29.59 68.60 2.03 45.84 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 23 C 0.18 7.98 5.30 86.36 0.46 8.44 16 24 C -0.14 -4.47 5.55 30.67 0.17 -4.30 16 25 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 26 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 27 H 0.15 2.29 6.11 -2.91 -0.02 2.27 16 28 H 0.40 9.40 7.46 -92.71 -0.69 8.71 16 29 H 0.09 2.28 6.48 -2.39 -0.02 2.27 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.95 7.71 -2.39 -0.02 1.94 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.98 7.93 -2.38 -0.02 1.96 16 34 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.12 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.37 322.69 4.94 -56.44 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.41 Total: 9.95 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 4.86 Total: 3.48 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -3.14 Total: -113.94 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -61.37 4.94 -56.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111026435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.005 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds