Wall clock time and date at job start Tue Mar 31 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39972 * 120.22194 * 221.46536 * 3 2 1 5 5 F 1.35099 * 120.07543 * 0.04201 * 4 3 2 6 6 C 1.38110 * 119.85135 * 180.02562 * 4 3 2 7 7 C 1.38460 * 120.31857 * 0.02562 * 6 4 3 8 8 C 1.38081 * 120.45835 * 359.67526 * 7 6 4 9 9 C 1.38827 * 120.13390 * 0.60313 * 8 7 6 10 10 N 1.39039 * 120.15825 * 179.70072 * 9 8 7 11 11 C 1.46507 * 119.99784 * 359.72694 * 10 9 8 12 12 C 1.53045 * 109.45819 * 205.00380 * 11 10 9 13 13 C 1.53186 * 109.31313 * 178.61343 * 12 11 10 14 14 N 1.46927 * 108.77731 * 54.63323 * 13 12 11 15 15 C 1.36932 * 120.63177 * 126.41349 * 14 13 12 16 16 H 1.08004 * 120.00038 * 207.66728 * 15 14 13 17 17 C 1.38814 * 119.99982 * 27.66313 * 15 14 13 18 18 N 1.31612 * 120.00200 * 17.37133 * 17 15 14 19 19 Si 1.86798 * 119.99944 * 197.36766 * 17 15 14 20 20 H 1.48495 * 109.47316 * 89.99828 * 19 17 15 21 21 H 1.48500 * 109.47279 * 210.00580 * 19 17 15 22 22 H 1.48504 * 109.47339 * 329.99883 * 19 17 15 23 23 C 1.46931 * 118.73618 * 306.39136 * 14 13 12 24 24 C 1.53033 * 109.45986 * 84.93458 * 11 10 9 25 25 H 1.08003 * 119.84340 * 180.02562 * 6 4 3 26 26 H 1.08002 * 119.77510 * 179.97438 * 7 6 4 27 27 H 1.08001 * 119.93028 * 180.30557 * 8 7 6 28 28 H 0.97000 * 120.00686 * 179.72703 * 10 9 8 29 29 H 1.09001 * 109.44826 * 324.96534 * 11 10 9 30 30 H 1.09002 * 109.49510 * 298.56645 * 12 11 10 31 31 H 1.09002 * 109.49762 * 58.65615 * 12 11 10 32 32 H 1.08996 * 109.58858 * 174.41929 * 13 12 11 33 33 H 1.09000 * 109.58501 * 294.84718 * 13 12 11 34 34 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 35 35 H 1.08998 * 109.59021 * 293.82309 * 23 14 13 36 36 H 1.08998 * 109.69942 * 173.46367 * 23 14 13 37 37 H 1.08999 * 109.49679 * 301.33365 * 24 11 10 38 38 H 1.08998 * 109.50318 * 61.40201 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2722 0.9073 0.8009 5 9 2.6024 1.7858 1.5786 6 6 4.6532 0.9016 0.7946 7 6 5.3448 0.0036 -0.0007 8 6 4.6634 -0.9006 -0.7911 9 6 3.2752 -0.9076 -0.8037 10 7 2.5885 -1.8136 -1.6041 11 6 3.3300 -2.7600 -2.4414 12 6 2.4597 -3.1817 -3.6276 13 6 3.2504 -4.1441 -4.5193 14 7 3.7329 -5.2622 -3.6971 15 6 3.4695 -6.5570 -4.0566 16 1 3.4082 -7.3256 -3.3004 17 6 3.2812 -6.8817 -5.3931 18 7 3.6819 -6.0536 -6.3343 19 14 2.4592 -8.4940 -5.8557 20 1 0.9916 -8.2907 -5.9554 21 1 2.9845 -8.9599 -7.1642 22 1 2.7481 -9.5134 -4.8152 23 6 4.5037 -4.9646 -2.4822 24 6 3.6988 -3.9929 -1.6133 25 1 5.1964 1.6009 1.4129 26 1 6.4249 0.0070 0.0009 27 1 5.2115 -1.6005 -1.4043 28 1 1.6185 -1.8192 -1.6083 29 1 4.2391 -2.2842 -2.8091 30 1 1.5619 -3.6796 -3.2612 31 1 2.1779 -2.3003 -4.2036 32 1 2.6038 -4.5244 -5.3100 33 1 4.0995 -3.6208 -4.9588 34 1 3.5507 -6.2806 -7.2681 35 1 5.4550 -4.5081 -2.7556 36 1 4.6860 -5.8853 -1.9280 37 1 4.2991 -3.6889 -0.7558 38 1 2.7894 -4.4830 -1.2654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113412366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:09 Heat of formation + Delta-G solvation = 29.513654 kcal Electronic energy + Delta-G solvation = -22280.070260 eV Core-core repulsion = 18844.338032 eV Total energy + Delta-G solvation = -3435.732228 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.18535 -39.98233 -37.85884 -36.46429 -35.19693 -32.63467 -31.27275 -30.59800 -29.74474 -28.53117 -25.09720 -24.18464 -22.81279 -22.30957 -21.25588 -19.73014 -18.98911 -17.76455 -17.28090 -16.61640 -15.94445 -15.59061 -15.31183 -15.08542 -14.72898 -14.16819 -13.91625 -13.69363 -13.48716 -13.33951 -13.32859 -13.02616 -12.92597 -12.47460 -12.36137 -11.94555 -11.69127 -11.56967 -11.20262 -10.96771 -10.81785 -10.78120 -10.47316 -10.23240 -10.00452 -9.72910 -9.68262 -9.03755 -8.57069 -7.67997 -6.81245 -5.89220 -3.31545 0.58774 1.20792 2.54468 2.83064 3.14446 3.32881 3.40364 3.40839 3.64293 3.76503 4.04393 4.41851 4.62507 4.86501 5.02928 5.11735 5.13453 5.27221 5.33648 5.40282 5.56737 5.62135 5.82276 5.87539 5.89019 6.10749 6.17479 6.26716 6.31099 6.34871 6.46047 6.54190 6.64027 6.81265 7.08324 7.19015 7.39090 7.47468 7.52528 7.71262 8.34285 9.10597 9.73568 10.28834 11.19712 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031292 B = 0.003498 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.568500 B = 8003.371969 C = 8478.740945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.260 3.740 3 C -0.163 4.163 4 C 0.192 3.808 5 F -0.132 7.132 6 C -0.224 4.224 7 C -0.011 4.011 8 C -0.210 4.210 9 C 0.302 3.698 10 N -0.719 5.719 11 C 0.149 3.851 12 C -0.149 4.149 13 C 0.175 3.825 14 N -0.592 5.592 15 C -0.256 4.256 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.147 3.853 24 C -0.147 4.147 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.399 0.601 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.023 0.977 34 H 0.255 0.745 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 12.461 11.322 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.054 4.054 3 C -0.174 4.174 4 C 0.169 3.831 5 F -0.110 7.110 6 C -0.245 4.245 7 C -0.031 4.031 8 C -0.232 4.232 9 C 0.188 3.812 10 N -0.340 5.340 11 C 0.046 3.954 12 C -0.189 4.189 13 C 0.048 3.952 14 N -0.315 5.315 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.020 3.980 24 C -0.187 4.187 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.235 0.765 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.655 12.264 10.998 16.685 hybrid contribution -0.583 -0.596 -0.131 0.844 sum 2.072 11.667 10.866 16.078 Atomic orbital electron populations 1.81247 1.11750 1.08250 1.08770 1.25272 0.92273 0.93990 0.93861 1.15372 0.84657 1.06756 1.10598 1.17304 0.89828 0.86895 0.89054 1.91520 1.80945 1.66388 1.72178 1.20744 0.91098 1.05600 1.07097 1.20944 1.00279 0.90848 0.91045 1.20827 0.91272 1.04870 1.06277 1.17544 0.91495 0.85798 0.86366 1.45444 1.08949 1.35158 1.44448 1.21264 0.95430 0.88255 0.90444 1.22559 0.99642 1.00234 0.96436 1.20758 0.95928 0.86304 0.92206 1.44086 1.60002 1.02659 1.24716 1.19198 1.43115 0.85251 0.90990 0.91545 1.25033 1.00470 0.97881 0.96068 1.70007 1.47793 1.37384 0.99459 0.86287 0.79464 0.83314 0.77691 1.21420 1.21691 1.20377 1.20877 0.92428 0.96134 0.88543 1.22528 1.01400 0.96442 0.98330 0.84368 0.84352 0.83946 0.76548 0.89940 0.92098 0.92510 0.88886 0.95920 0.93505 0.96162 0.92357 0.92427 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.69 18.54 41.84 0.78 -5.91 16 2 C 0.26 3.64 13.74 -22.47 -0.31 3.33 16 3 C -0.16 -1.96 5.76 -106.51 -0.61 -2.57 16 4 C 0.19 2.05 7.28 -38.98 -0.28 1.77 16 5 F -0.13 -1.54 16.81 2.25 0.04 -1.50 16 6 C -0.22 -1.86 10.00 -39.55 -0.40 -2.26 16 7 C -0.01 -0.09 10.02 -39.56 -0.40 -0.48 16 8 C -0.21 -2.04 8.80 -39.42 -0.35 -2.39 16 9 C 0.30 3.49 6.64 -83.57 -0.55 2.93 16 10 N -0.72 -9.16 5.16 -51.92 -0.27 -9.43 16 11 C 0.15 2.14 2.10 -67.89 -0.14 1.99 16 12 C -0.15 -2.53 5.55 -26.61 -0.15 -2.67 16 13 C 0.17 3.80 5.31 -3.71 -0.02 3.78 16 14 N -0.59 -13.69 2.99 -172.32 -0.52 -14.21 16 15 C -0.26 -6.68 9.59 -15.06 -0.14 -6.83 16 16 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 17 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 18 N -0.90 -25.02 11.19 55.49 0.62 -24.40 16 19 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.15 2.75 6.51 -3.70 -0.02 2.73 16 24 C -0.15 -2.23 5.57 -26.61 -0.15 -2.38 16 25 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 26 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 27 H 0.14 1.35 6.08 -52.49 -0.32 1.03 16 28 H 0.40 5.25 7.46 -40.82 -0.30 4.95 16 29 H 0.08 1.14 6.49 -51.93 -0.34 0.80 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 37 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -28.51 322.08 -7.73 -36.24 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.59 Total: 1.39 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.61 Total: -3.01 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.61 Total: -53.95 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.51 -7.73 -36.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113412366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.750 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds