Wall clock time and date at job start Tue Mar 31 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39972 * 120.22194 * 221.46536 * 3 2 1 5 5 F 1.35099 * 120.07543 * 0.04201 * 4 3 2 6 6 C 1.38110 * 119.85135 * 180.02562 * 4 3 2 7 7 C 1.38460 * 120.31857 * 0.02562 * 6 4 3 8 8 C 1.38081 * 120.45835 * 359.67526 * 7 6 4 9 9 C 1.38827 * 120.13390 * 0.60313 * 8 7 6 10 10 N 1.39039 * 120.15825 * 179.70072 * 9 8 7 11 11 C 1.46507 * 119.99784 * 359.72694 * 10 9 8 12 12 C 1.53045 * 109.45819 * 205.00380 * 11 10 9 13 13 C 1.53186 * 109.31313 * 178.61343 * 12 11 10 14 14 N 1.46927 * 108.77731 * 54.63323 * 13 12 11 15 15 C 1.36932 * 120.63177 * 126.41349 * 14 13 12 16 16 H 1.08004 * 120.00038 * 207.66728 * 15 14 13 17 17 C 1.38814 * 119.99982 * 27.66313 * 15 14 13 18 18 N 1.31612 * 120.00200 * 17.37133 * 17 15 14 19 19 Si 1.86798 * 119.99944 * 197.36766 * 17 15 14 20 20 H 1.48495 * 109.47316 * 89.99828 * 19 17 15 21 21 H 1.48500 * 109.47279 * 210.00580 * 19 17 15 22 22 H 1.48504 * 109.47339 * 329.99883 * 19 17 15 23 23 C 1.46931 * 118.73618 * 306.39136 * 14 13 12 24 24 C 1.53033 * 109.45986 * 84.93458 * 11 10 9 25 25 H 1.08003 * 119.84340 * 180.02562 * 6 4 3 26 26 H 1.08002 * 119.77510 * 179.97438 * 7 6 4 27 27 H 1.08001 * 119.93028 * 180.30557 * 8 7 6 28 28 H 0.97000 * 120.00686 * 179.72703 * 10 9 8 29 29 H 1.09001 * 109.44826 * 324.96534 * 11 10 9 30 30 H 1.09002 * 109.49510 * 298.56645 * 12 11 10 31 31 H 1.09002 * 109.49762 * 58.65615 * 12 11 10 32 32 H 1.08996 * 109.58858 * 174.41929 * 13 12 11 33 33 H 1.09000 * 109.58501 * 294.84718 * 13 12 11 34 34 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 35 35 H 1.08998 * 109.59021 * 293.82309 * 23 14 13 36 36 H 1.08998 * 109.69942 * 173.46367 * 23 14 13 37 37 H 1.08999 * 109.49679 * 301.33365 * 24 11 10 38 38 H 1.08998 * 109.50318 * 61.40201 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2722 0.9073 0.8009 5 9 2.6024 1.7858 1.5786 6 6 4.6532 0.9016 0.7946 7 6 5.3448 0.0036 -0.0007 8 6 4.6634 -0.9006 -0.7911 9 6 3.2752 -0.9076 -0.8037 10 7 2.5885 -1.8136 -1.6041 11 6 3.3300 -2.7600 -2.4414 12 6 2.4597 -3.1817 -3.6276 13 6 3.2504 -4.1441 -4.5193 14 7 3.7329 -5.2622 -3.6971 15 6 3.4695 -6.5570 -4.0566 16 1 3.4082 -7.3256 -3.3004 17 6 3.2812 -6.8817 -5.3931 18 7 3.6819 -6.0536 -6.3343 19 14 2.4592 -8.4940 -5.8557 20 1 0.9916 -8.2907 -5.9554 21 1 2.9845 -8.9599 -7.1642 22 1 2.7481 -9.5134 -4.8152 23 6 4.5037 -4.9646 -2.4822 24 6 3.6988 -3.9929 -1.6133 25 1 5.1964 1.6009 1.4129 26 1 6.4249 0.0070 0.0009 27 1 5.2115 -1.6005 -1.4043 28 1 1.6185 -1.8192 -1.6083 29 1 4.2391 -2.2842 -2.8091 30 1 1.5619 -3.6796 -3.2612 31 1 2.1779 -2.3003 -4.2036 32 1 2.6038 -4.5244 -5.3100 33 1 4.0995 -3.6208 -4.9588 34 1 3.5507 -6.2806 -7.2681 35 1 5.4550 -4.5081 -2.7556 36 1 4.6860 -5.8853 -1.9280 37 1 4.2991 -3.6889 -0.7558 38 1 2.7894 -4.4830 -1.2654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113412366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:09 Heat of formation + Delta-G solvation = 13.997334 kcal Electronic energy + Delta-G solvation = -22280.743098 eV Core-core repulsion = 18844.338032 eV Total energy + Delta-G solvation = -3436.405066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.02289 -40.90647 -39.17193 -37.53419 -36.49280 -34.19404 -32.39824 -31.88646 -31.17164 -29.61310 -26.78164 -25.01677 -24.11658 -23.76917 -22.38654 -21.04111 -20.03741 -18.87482 -18.52315 -17.85091 -16.86031 -16.79116 -16.48078 -16.19563 -15.87765 -15.47692 -15.34485 -15.08950 -14.76919 -14.60989 -14.38167 -14.28930 -14.07389 -13.74620 -13.46869 -13.15467 -13.01022 -12.83685 -12.61716 -12.45871 -12.35060 -12.11303 -12.00296 -11.85262 -11.64266 -11.29563 -10.90165 -10.53596 -9.84453 -8.69507 -8.57513 -7.88582 -5.31837 -0.22225 0.44757 1.46137 1.48815 1.49135 1.56169 1.89665 2.15201 2.51065 2.80598 2.83650 3.22617 3.27985 3.69188 3.82470 3.99654 4.03475 4.10048 4.24972 4.33472 4.47057 4.48757 4.68038 4.80572 4.85981 4.95574 4.99067 5.08619 5.15685 5.19634 5.21140 5.36178 5.48766 5.53351 5.65461 5.71204 5.79544 6.11506 6.37923 6.39959 6.48128 7.15626 7.87326 8.36553 9.17898 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031292 B = 0.003498 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.568500 B = 8003.371969 C = 8478.740945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.274 3.726 3 C -0.178 4.178 4 C 0.177 3.823 5 F -0.142 7.142 6 C -0.206 4.206 7 C 0.007 3.993 8 C -0.212 4.212 9 C 0.292 3.708 10 N -0.724 5.724 11 C 0.165 3.835 12 C -0.136 4.136 13 C 0.181 3.819 14 N -0.611 5.611 15 C -0.262 4.262 16 H 0.065 0.935 17 C -0.046 4.046 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.269 1.269 23 C 0.143 3.857 24 C -0.132 4.132 25 H 0.167 0.833 26 H 0.178 0.822 27 H 0.150 0.850 28 H 0.395 0.605 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.010 0.990 34 H 0.250 0.750 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 13.565 13.068 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.039 4.039 3 C -0.188 4.188 4 C 0.155 3.845 5 F -0.120 7.120 6 C -0.227 4.227 7 C -0.013 4.013 8 C -0.234 4.234 9 C 0.181 3.819 10 N -0.346 5.346 11 C 0.061 3.939 12 C -0.176 4.176 13 C 0.055 3.945 14 N -0.335 5.335 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.242 4.242 18 N -0.577 5.577 19 Si 0.789 3.211 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.194 1.194 23 C 0.018 3.982 24 C -0.172 4.172 25 H 0.184 0.816 26 H 0.195 0.805 27 H 0.168 0.832 28 H 0.230 0.770 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.646 13.397 12.796 19.099 hybrid contribution -1.073 -0.864 -0.588 1.498 sum 3.573 12.533 12.208 17.857 Atomic orbital electron populations 1.81242 1.13052 1.09860 1.10441 1.25704 0.92791 0.92785 0.92664 1.15508 0.83495 1.07943 1.11857 1.17562 0.90796 0.86889 0.89267 1.91501 1.81370 1.66683 1.72451 1.21139 0.89888 1.05330 1.06310 1.21388 1.02099 0.88878 0.88893 1.21054 0.90292 1.05487 1.06594 1.17662 0.92231 0.85622 0.86430 1.45163 1.08605 1.35639 1.45191 1.20934 0.95208 0.88426 0.89353 1.22296 0.98847 0.99399 0.97066 1.20519 0.95154 0.86649 0.92211 1.44337 1.61146 1.02018 1.25996 1.19490 1.42110 0.86646 0.91029 0.91753 1.25679 1.01597 1.00722 0.96188 1.70139 1.49346 1.38930 0.99293 0.85379 0.78164 0.80420 0.77175 1.21664 1.22133 1.19421 1.21040 0.92906 0.97089 0.87207 1.22348 1.00578 0.95743 0.98561 0.81553 0.80452 0.83209 0.77024 0.88586 0.93283 0.91128 0.92772 0.97174 0.94100 0.95146 0.92723 0.89329 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.02 18.54 19.00 0.35 -14.67 16 2 C 0.27 7.58 13.74 88.33 1.21 8.80 16 3 C -0.18 -3.95 5.76 -21.09 -0.12 -4.07 16 4 C 0.18 3.34 7.28 22.66 0.16 3.51 16 5 F -0.14 -3.08 16.81 44.97 0.76 -2.32 16 6 C -0.21 -2.47 10.00 22.29 0.22 -2.25 16 7 C 0.01 0.07 10.02 22.29 0.22 0.29 16 8 C -0.21 -3.23 8.80 22.37 0.20 -3.03 16 9 C 0.29 6.02 6.64 38.66 0.26 6.27 16 10 N -0.72 -17.24 5.16 -318.16 -1.64 -18.88 16 11 C 0.16 4.41 2.10 45.02 0.09 4.51 16 12 C -0.14 -4.60 5.55 30.67 0.17 -4.43 16 13 C 0.18 8.02 5.31 86.36 0.46 8.48 16 14 N -0.61 -28.45 2.99 -699.09 -2.09 -30.54 16 15 C -0.26 -13.86 9.59 84.03 0.81 -13.05 16 16 H 0.06 3.35 7.89 -2.91 -0.02 3.32 16 17 C -0.05 -2.49 4.91 84.86 0.42 -2.08 16 18 N -0.93 -53.06 11.19 21.65 0.24 -52.82 16 19 Si 0.96 43.92 29.59 68.60 2.03 45.95 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 C 0.14 5.18 6.51 86.36 0.56 5.74 16 24 C -0.13 -3.74 5.57 30.67 0.17 -3.57 16 25 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 26 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 27 H 0.15 2.13 6.08 -2.91 -0.02 2.11 16 28 H 0.40 10.14 7.46 -92.71 -0.69 9.45 16 29 H 0.10 2.36 6.49 -2.39 -0.02 2.35 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 2.81 6.04 -2.39 -0.01 2.80 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.98 7.94 -2.39 -0.02 1.96 16 37 H 0.09 1.99 7.67 -2.39 -0.02 1.97 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -64.04 322.08 4.89 -59.15 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.41 Total: 9.02 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.84 Total: 5.12 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -3.14 Total: -116.91 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.76 Total: -2.32 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.04 4.89 -59.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113412366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.146 kcal (2) G-P(sol) polarization free energy of solvation -64.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds