Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47297 * 2 1 4 4 C 1.34269 * 125.75772 * 125.29358 * 3 2 1 5 5 C 1.38054 * 107.41792 * 180.14202 * 4 3 2 6 6 C 1.47413 * 126.41285 * 179.89934 * 5 4 3 7 7 O 1.21610 * 120.00549 * 359.70616 * 6 5 4 8 8 N 1.34784 * 119.99616 * 179.70932 * 6 5 4 9 9 C 1.40103 * 119.99628 * 179.97438 * 8 6 5 10 10 C 1.40422 * 125.97811 * 359.71576 * 9 8 6 11 11 C 1.35244 * 107.86459 * 179.86097 * 10 9 8 12 12 N 1.34972 * 107.86318 * 0.39666 * 11 10 9 13 13 C 1.46500 * 125.97250 * 179.70958 * 12 11 10 14 14 C 1.50700 * 109.46763 * 125.01642 * 13 12 11 15 15 H 1.07997 * 120.00037 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99702 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00045 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99967 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46870 * 90.00648 * 18 16 14 20 20 H 1.48496 * 109.47137 * 210.00216 * 18 16 14 21 21 H 1.48500 * 109.47582 * 330.00767 * 18 16 14 22 22 N 1.31231 * 125.97264 * 180.02562 * 9 8 6 23 23 C 1.41292 * 107.16704 * 359.62808 * 5 4 3 24 24 N 1.30446 * 108.02692 * 0.23376 * 23 5 4 25 25 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47037 * 300.00116 * 1 2 3 27 27 H 1.08997 * 109.46889 * 60.00285 * 1 2 3 28 28 H 1.08999 * 109.47037 * 239.99884 * 2 1 3 29 29 H 1.09003 * 109.47159 * 120.00365 * 2 1 3 30 30 H 1.08002 * 126.29080 * 0.04115 * 4 3 2 31 31 H 0.96995 * 120.00015 * 359.72345 * 8 6 5 32 32 H 1.07992 * 126.06466 * 359.97438 * 10 9 8 33 33 H 1.08003 * 126.06354 * 180.11027 * 11 10 9 34 34 H 1.08991 * 109.47462 * 245.02148 * 13 12 11 35 35 H 1.09004 * 109.46757 * 5.02218 * 13 12 11 36 36 H 0.96996 * 120.00048 * 179.97438 * 17 16 14 37 37 H 1.07997 * 125.98475 * 180.20133 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8735 1.9110 0.8893 5 6 3.0712 3.2310 0.5367 6 6 3.9334 4.2030 1.2329 7 8 4.5519 3.8665 2.2245 8 7 4.0362 5.4649 0.7706 9 6 4.8552 6.3889 1.4326 10 6 5.6165 6.1387 2.5857 11 6 6.2672 7.2795 2.9089 12 7 5.9269 8.2209 2.0035 13 6 6.4009 9.6070 1.9838 14 6 7.0170 9.9080 0.6418 15 1 7.0515 9.1434 -0.1202 16 6 7.5365 11.1594 0.3869 17 7 8.0737 11.4223 -0.7844 18 14 7.4760 12.4820 1.7047 19 1 8.7070 12.4124 2.5326 20 1 7.3868 13.8176 1.0619 21 1 6.2866 12.2673 2.5674 22 7 5.0407 7.6412 1.0868 23 6 2.2973 3.4740 -0.6202 24 7 1.6764 2.3693 -0.9300 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3226 1.3991 1.7276 31 1 3.5460 5.7323 -0.0226 32 1 5.6739 5.2012 3.1187 33 1 6.9363 7.4145 3.7459 34 1 5.5618 10.2805 2.1577 35 1 7.1473 9.7468 2.7658 36 1 8.4388 12.3029 -0.9639 37 1 2.2309 4.4104 -1.1542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117710217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = 130.181627 kcal Electronic energy + Delta-G solvation = -21377.197010 eV Core-core repulsion = 17965.750035 eV Total energy + Delta-G solvation = -3411.446975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64067 -40.56436 -38.84670 -34.93246 -34.67084 -33.23684 -31.35455 -30.83590 -29.88870 -29.31276 -27.11597 -24.60391 -23.56357 -22.34998 -21.12282 -20.97279 -20.01065 -19.37536 -17.92984 -17.02471 -16.59788 -16.02589 -15.96062 -15.39777 -15.08091 -14.71583 -14.40884 -14.32215 -13.88443 -13.55250 -13.13635 -13.02016 -12.85458 -12.58493 -12.49308 -12.27896 -12.09877 -11.94283 -11.22175 -11.10643 -10.73758 -10.60516 -9.99804 -9.96299 -9.87864 -9.59306 -9.48121 -8.95791 -8.74183 -8.13364 -7.45962 -6.20989 -4.23061 1.29764 1.93841 1.99544 2.71999 2.86875 3.17590 3.23863 3.24732 3.26377 3.83934 3.88019 4.06698 4.25206 4.42579 4.47062 4.58196 4.70012 4.89922 5.05316 5.07025 5.15275 5.31283 5.39503 5.58151 5.62902 5.74865 6.14371 6.26427 6.43295 6.48939 6.51441 6.64252 6.70192 7.25792 7.28820 7.42484 7.65829 7.85860 8.35476 8.36949 8.61720 8.89348 9.34057 10.91743 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.040882 B = 0.002706 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.741050 B =10345.189049 C =10773.919220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 N -0.362 5.362 4 C 0.131 3.869 5 C -0.288 4.288 6 C 0.603 3.397 7 O -0.529 6.529 8 N -0.626 5.626 9 C 0.264 3.736 10 C -0.283 4.283 11 C 0.050 3.950 12 N -0.320 5.320 13 C 0.232 3.768 14 C -0.534 4.534 15 H 0.086 0.914 16 C 0.076 3.924 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 N -0.298 5.298 23 C 0.083 3.917 24 N -0.295 5.295 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.190 0.810 31 H 0.410 0.590 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.268 0.732 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.148 -21.379 4.339 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.141 5.141 4 C -0.020 4.020 5 C -0.303 4.303 6 C 0.390 3.610 7 O -0.405 6.405 8 N -0.273 5.273 9 C 0.010 3.990 10 C -0.314 4.314 11 C -0.099 4.099 12 N -0.102 5.102 13 C 0.113 3.887 14 C -0.572 4.572 15 H 0.104 0.896 16 C -0.128 4.128 17 N -0.525 5.525 18 Si 0.699 3.301 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.189 1.189 22 N -0.128 5.128 23 C -0.105 4.105 24 N -0.114 5.114 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.207 0.793 31 H 0.246 0.754 32 H 0.179 0.821 33 H 0.186 0.814 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.750 -21.162 3.268 25.447 hybrid contribution 0.680 0.790 1.207 1.595 sum -13.070 -20.372 4.475 24.614 Atomic orbital electron populations 1.22062 0.93372 1.03118 1.03859 1.21836 0.96454 0.76827 1.04340 1.48657 1.34147 1.10679 1.20661 1.22968 0.91355 0.93388 0.94338 1.20077 1.11507 0.95207 1.03512 1.17093 0.80397 0.80232 0.83244 1.90700 1.45893 1.78136 1.25780 1.42184 1.45800 1.09020 1.30295 1.19070 0.95921 0.89612 0.94372 1.21555 1.07271 1.00769 1.01803 1.22558 1.01275 0.89435 0.96682 1.48602 1.32480 1.10898 1.18176 1.20038 0.95078 0.73605 0.99977 1.21117 1.38712 0.99668 0.97666 0.89617 1.24839 0.94475 0.97904 0.95593 1.69874 1.38559 1.22406 1.21690 0.86906 0.79161 0.81902 0.82126 1.19733 1.20565 1.18856 1.77397 1.14169 1.06050 1.15222 1.24161 0.93859 0.97608 0.94853 1.77155 1.23914 0.97058 1.13290 0.90458 0.91889 0.90882 0.89236 0.88161 0.79338 0.75437 0.82052 0.81428 0.94044 0.93358 0.92207 0.79094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.09 37.16 0.37 -0.39 16 2 C 0.13 0.61 7.21 -4.04 -0.03 0.58 16 3 N -0.36 -3.18 3.65 -60.81 -0.22 -3.40 16 4 C 0.13 1.24 11.25 -16.55 -0.19 1.06 16 5 C -0.29 -3.38 6.13 -105.07 -0.64 -4.02 16 6 C 0.60 9.06 7.78 -12.52 -0.10 8.97 16 7 O -0.53 -9.26 14.02 5.27 0.07 -9.19 16 8 N -0.63 -9.99 5.44 -12.11 -0.07 -10.05 16 9 C 0.26 5.33 8.11 -154.43 -1.25 4.08 16 10 C -0.28 -5.55 9.61 -39.83 -0.38 -5.93 16 11 C 0.05 0.97 11.44 -17.24 -0.20 0.77 16 12 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16 13 C 0.23 5.53 5.33 -5.19 -0.03 5.50 16 14 C -0.53 -15.13 9.79 -34.44 -0.34 -15.47 16 15 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 18 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 22 N -0.30 -6.88 12.42 31.43 0.39 -6.49 16 23 C 0.08 0.87 11.50 -16.98 -0.20 0.68 16 24 N -0.29 -3.19 12.33 30.86 0.38 -2.81 16 25 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.23 8.06 -51.93 -0.42 -0.19 16 30 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.41 5.38 7.78 -40.82 -0.32 5.07 16 32 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 33 H 0.17 2.56 8.06 -52.48 -0.42 2.14 16 34 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 35 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.19 1.49 7.50 -52.49 -0.39 1.10 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -36.13 326.40 -6.05 -42.18 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.33 Total: 4.94 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -3.07 Total: -2.15 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 1.03 Total: -56.24 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.13 -6.05 -42.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.363 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds