Wall clock time and date at job start Tue Mar 31 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47297 * 2 1 4 4 C 1.34269 * 125.75772 * 125.29358 * 3 2 1 5 5 C 1.38054 * 107.41792 * 180.14202 * 4 3 2 6 6 C 1.47413 * 126.41285 * 179.89934 * 5 4 3 7 7 O 1.21610 * 120.00549 * 359.70616 * 6 5 4 8 8 N 1.34784 * 119.99616 * 179.70932 * 6 5 4 9 9 C 1.40103 * 119.99628 * 179.97438 * 8 6 5 10 10 C 1.40422 * 125.97811 * 359.71576 * 9 8 6 11 11 C 1.35244 * 107.86459 * 179.86097 * 10 9 8 12 12 N 1.34972 * 107.86318 * 0.39666 * 11 10 9 13 13 C 1.46500 * 125.97250 * 179.70958 * 12 11 10 14 14 C 1.50700 * 109.46763 * 125.01642 * 13 12 11 15 15 H 1.07997 * 120.00037 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99702 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00045 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99967 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46870 * 90.00648 * 18 16 14 20 20 H 1.48496 * 109.47137 * 210.00216 * 18 16 14 21 21 H 1.48500 * 109.47582 * 330.00767 * 18 16 14 22 22 N 1.31231 * 125.97264 * 180.02562 * 9 8 6 23 23 C 1.41292 * 107.16704 * 359.62808 * 5 4 3 24 24 N 1.30446 * 108.02692 * 0.23376 * 23 5 4 25 25 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47037 * 300.00116 * 1 2 3 27 27 H 1.08997 * 109.46889 * 60.00285 * 1 2 3 28 28 H 1.08999 * 109.47037 * 239.99884 * 2 1 3 29 29 H 1.09003 * 109.47159 * 120.00365 * 2 1 3 30 30 H 1.08002 * 126.29080 * 0.04115 * 4 3 2 31 31 H 0.96995 * 120.00015 * 359.72345 * 8 6 5 32 32 H 1.07992 * 126.06466 * 359.97438 * 10 9 8 33 33 H 1.08003 * 126.06354 * 180.11027 * 11 10 9 34 34 H 1.08991 * 109.47462 * 245.02148 * 13 12 11 35 35 H 1.09004 * 109.46757 * 5.02218 * 13 12 11 36 36 H 0.96996 * 120.00048 * 179.97438 * 17 16 14 37 37 H 1.07997 * 125.98475 * 180.20133 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8735 1.9110 0.8893 5 6 3.0712 3.2310 0.5367 6 6 3.9334 4.2030 1.2329 7 8 4.5519 3.8665 2.2245 8 7 4.0362 5.4649 0.7706 9 6 4.8552 6.3889 1.4326 10 6 5.6165 6.1387 2.5857 11 6 6.2672 7.2795 2.9089 12 7 5.9269 8.2209 2.0035 13 6 6.4009 9.6070 1.9838 14 6 7.0170 9.9080 0.6418 15 1 7.0515 9.1434 -0.1202 16 6 7.5365 11.1594 0.3869 17 7 8.0737 11.4223 -0.7844 18 14 7.4760 12.4820 1.7047 19 1 8.7070 12.4124 2.5326 20 1 7.3868 13.8176 1.0619 21 1 6.2866 12.2673 2.5674 22 7 5.0407 7.6412 1.0868 23 6 2.2973 3.4740 -0.6202 24 7 1.6764 2.3693 -0.9300 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3226 1.3991 1.7276 31 1 3.5460 5.7323 -0.0226 32 1 5.6739 5.2012 3.1187 33 1 6.9363 7.4145 3.7459 34 1 5.5618 10.2805 2.1577 35 1 7.1473 9.7468 2.7658 36 1 8.4388 12.3029 -0.9639 37 1 2.2309 4.4104 -1.1542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:37 Heat of formation + Delta-G solvation = 104.421159 kcal Electronic energy + Delta-G solvation = -21378.314068 eV Core-core repulsion = 17965.750035 eV Total energy + Delta-G solvation = -3412.564033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.50261 -42.02849 -40.11834 -36.18735 -35.50005 -35.09804 -33.12288 -31.58808 -31.02122 -30.61949 -28.88927 -25.52454 -24.56317 -23.92910 -22.42571 -21.82727 -21.36235 -20.61901 -19.07850 -18.87471 -18.07622 -17.04572 -16.96181 -16.73039 -16.34191 -15.94153 -15.65213 -15.26264 -15.12783 -14.80986 -14.64708 -14.32703 -13.90097 -13.83378 -13.73746 -13.36444 -12.98477 -12.96311 -12.53443 -12.43329 -12.28190 -11.91593 -11.80750 -11.56359 -11.40870 -10.85551 -10.84302 -10.60649 -9.84042 -9.69337 -9.03403 -8.35789 -6.45920 0.42525 0.99157 1.22803 1.28429 1.37985 1.40959 1.50283 1.58847 1.92655 2.30599 2.45173 2.58198 2.96755 3.40590 3.74426 3.88697 4.03510 4.07339 4.09826 4.23729 4.37612 4.40674 4.61512 4.63833 4.81844 4.85903 4.90414 4.91450 4.95320 5.19681 5.23452 5.27007 5.39593 5.88184 5.92357 6.04044 6.27716 6.44364 6.51097 6.60478 7.04901 7.15965 7.17165 8.81368 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.040882 B = 0.002706 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.741050 B =10345.189049 C =10773.919220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.355 5.355 4 C 0.146 3.854 5 C -0.314 4.314 6 C 0.606 3.394 7 O -0.556 6.556 8 N -0.624 5.624 9 C 0.268 3.732 10 C -0.294 4.294 11 C 0.060 3.940 12 N -0.345 5.345 13 C 0.239 3.761 14 C -0.546 4.546 15 H 0.026 0.974 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.956 3.044 19 H -0.253 1.253 20 H -0.281 1.281 21 H -0.239 1.239 22 N -0.350 5.350 23 C 0.083 3.917 24 N -0.317 5.317 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.133 0.867 30 H 0.216 0.784 31 H 0.421 0.579 32 H 0.171 0.829 33 H 0.212 0.788 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.272 0.728 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.737 -22.481 6.724 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 N -0.134 5.134 4 C -0.007 4.007 5 C -0.329 4.329 6 C 0.396 3.604 7 O -0.434 6.434 8 N -0.272 5.272 9 C 0.013 3.987 10 C -0.324 4.324 11 C -0.088 4.088 12 N -0.127 5.127 13 C 0.120 3.880 14 C -0.584 4.584 15 H 0.044 0.956 16 C -0.186 4.186 17 N -0.582 5.582 18 Si 0.777 3.223 19 H -0.177 1.177 20 H -0.207 1.207 21 H -0.162 1.162 22 N -0.180 5.180 23 C -0.105 4.105 24 N -0.137 5.137 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.151 0.849 30 H 0.233 0.767 31 H 0.258 0.742 32 H 0.188 0.812 33 H 0.228 0.772 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -14.383 -22.326 5.633 27.149 hybrid contribution 0.801 0.878 0.369 1.244 sum -13.583 -21.448 6.002 26.087 Atomic orbital electron populations 1.22031 0.93249 1.04303 1.02380 1.22292 0.96580 0.74967 1.06537 1.49034 1.33208 1.11554 1.19576 1.23370 0.90327 0.92643 0.94398 1.19898 1.12739 0.95633 1.04671 1.17541 0.80054 0.79945 0.82853 1.90662 1.47187 1.78455 1.27054 1.42335 1.45425 1.08894 1.30578 1.19459 0.95492 0.89359 0.94381 1.21783 1.07529 1.01291 1.01836 1.23272 1.00627 0.88284 0.96593 1.48506 1.33673 1.11132 1.19402 1.19883 0.95503 0.74697 0.97963 1.21239 1.39603 0.98762 0.98816 0.95587 1.25942 0.93451 1.00747 0.98443 1.70054 1.40013 1.23453 1.24649 0.85603 0.80774 0.77218 0.78692 1.17697 1.20689 1.16222 1.77314 1.16052 1.07674 1.16982 1.24444 0.93213 0.98308 0.94498 1.77131 1.24542 0.97610 1.14403 0.87955 0.92748 0.92900 0.88173 0.84867 0.76743 0.74213 0.81219 0.77161 0.93680 0.89992 0.91910 0.77575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.09 71.98 0.73 -0.45 16 2 C 0.11 0.80 7.21 86.38 0.62 1.42 16 3 N -0.36 -5.54 3.65 -346.29 -1.26 -6.81 16 4 C 0.15 2.48 11.25 84.28 0.95 3.43 16 5 C -0.31 -7.12 6.13 -20.15 -0.12 -7.24 16 6 C 0.61 18.05 7.78 86.66 0.67 18.72 16 7 O -0.56 -19.11 14.02 -4.06 -0.06 -19.17 16 8 N -0.62 -20.16 5.44 -310.47 -1.69 -21.85 16 9 C 0.27 10.95 8.11 133.34 1.08 12.03 16 10 C -0.29 -11.32 9.61 22.11 0.21 -11.11 16 11 C 0.06 2.24 11.44 83.52 0.96 3.20 16 12 N -0.35 -15.71 3.67 -351.84 -1.29 -17.00 16 13 C 0.24 11.19 5.33 85.63 0.46 11.64 16 14 C -0.55 -31.84 9.79 25.60 0.25 -31.59 16 15 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 16 C 0.01 0.73 5.47 84.66 0.46 1.19 16 17 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 18 Si 0.96 40.98 27.47 68.60 1.88 42.86 16 19 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 22 N -0.35 -16.58 12.42 -54.47 -0.68 -17.26 16 23 C 0.08 1.70 11.50 85.65 0.99 2.68 16 24 N -0.32 -6.57 12.33 -56.28 -0.69 -7.27 16 25 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.13 0.08 8.06 -2.39 -0.02 0.06 16 30 H 0.22 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.42 11.36 7.78 -92.71 -0.72 10.64 16 32 H 0.17 6.25 5.91 -2.91 -0.02 6.24 16 33 H 0.21 5.70 8.06 -2.91 -0.02 5.68 16 34 H 0.05 2.06 7.20 -2.39 -0.02 2.05 16 35 H 0.08 3.28 7.50 -2.38 -0.02 3.26 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.21 3.20 7.50 -2.91 -0.02 3.18 16 Total: -1.00 -82.38 326.40 4.10 -78.28 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.33 Total: 22.54 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 7.25 Total: 3.93 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.31 Total: -128.44 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.06 Total: -19.17 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.88 Total: 42.86 kcal Total: -82.38 4.10 -78.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.703 kcal (2) G-P(sol) polarization free energy of solvation -82.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds