Wall clock time and date at job start Tue Mar 31 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34950 * 126.03150 * 2 1 4 4 C 1.35318 * 107.74293 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04202 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47115 * 89.99585 * 5 4 3 7 7 O 1.21297 * 119.99886 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.40151 * 120.00099 * 180.02562 * 8 6 5 10 10 C 1.40416 * 125.97476 * 0.02562 * 9 8 6 11 11 C 1.35237 * 107.86796 * 179.97438 * 10 9 8 12 12 N 1.34970 * 107.85941 * 0.26441 * 11 10 9 13 13 C 1.46504 * 125.96940 * 179.73198 * 12 11 10 14 14 C 1.50699 * 109.46610 * 125.00265 * 13 12 11 15 15 H 1.08001 * 120.00250 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00627 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99417 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47072 * 90.00326 * 18 16 14 20 20 H 1.48507 * 109.46536 * 209.99969 * 18 16 14 21 21 H 1.48498 * 109.47084 * 329.99528 * 18 16 14 22 22 N 1.31213 * 125.97528 * 180.02562 * 9 8 6 23 23 C 1.39873 * 107.92001 * 0.26037 * 4 3 2 24 24 N 1.30837 * 108.20192 * 359.55913 * 23 4 3 25 25 H 1.08998 * 109.47272 * 90.00291 * 1 2 3 26 26 H 1.09004 * 109.47288 * 209.99769 * 1 2 3 27 27 H 1.09003 * 109.47491 * 329.99747 * 1 2 3 28 28 H 1.07997 * 126.12913 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46960 * 329.99741 * 5 4 3 30 30 H 1.08996 * 109.47368 * 209.99845 * 5 4 3 31 31 H 0.96994 * 119.99525 * 0.02562 * 8 6 5 32 32 H 1.08000 * 126.06023 * 359.97438 * 10 9 8 33 33 H 1.08002 * 126.06518 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.46990 * 244.99353 * 13 12 11 35 35 H 1.08992 * 109.47218 * 5.00271 * 13 12 11 36 36 H 0.97001 * 120.00298 * 179.97438 * 17 16 14 37 37 H 1.08003 * 125.89601 * 179.74007 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0002 6 6 5.1763 1.8375 1.4207 7 8 4.5363 1.3769 2.3425 8 7 6.2525 2.6104 1.6673 9 6 6.6326 2.8816 2.9888 10 6 5.9867 2.4152 4.1451 11 6 6.6573 2.8949 5.2170 12 7 7.6852 3.6418 4.7619 13 6 8.6641 4.3530 5.5881 14 6 10.0555 3.9253 5.1982 15 1 10.1966 3.1964 4.4138 16 6 11.1485 4.4646 5.8427 17 7 12.3628 4.0911 5.5029 18 14 10.9045 5.7259 7.1989 19 1 10.7886 5.0311 8.5061 20 1 12.0668 6.6497 7.2307 21 1 9.6642 6.4997 6.9379 22 7 7.6542 3.6156 3.3618 23 6 3.5346 -0.7320 -0.0070 24 7 2.2892 -1.1327 -0.0006 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.9279 2.1194 0.0004 29 1 4.5440 2.4807 -0.5134 30 1 5.5819 1.0347 -0.5146 31 1 6.7639 2.9790 0.9302 32 1 5.1100 1.7851 4.1732 33 1 6.4108 2.7162 6.2533 34 1 8.5575 5.4268 5.4342 35 1 8.4925 4.1175 6.6383 36 1 13.1318 4.4708 5.9562 37 1 4.4054 -1.3708 -0.0130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117710369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:52 Heat of formation + Delta-G solvation = 134.974476 kcal Electronic energy + Delta-G solvation = -21427.175599 eV Core-core repulsion = 18015.936457 eV Total energy + Delta-G solvation = -3411.239142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40866 -40.63239 -39.08896 -34.73225 -33.83523 -33.26588 -32.03297 -31.14111 -29.39333 -28.63956 -27.14802 -25.93145 -22.83911 -21.78629 -21.27726 -20.61354 -19.91614 -19.49241 -17.18520 -17.00323 -16.79639 -16.42060 -15.53646 -15.37731 -15.33469 -14.59778 -14.41466 -13.94297 -13.73186 -13.52002 -13.14913 -13.06453 -12.80711 -12.64077 -12.50959 -12.31078 -12.18831 -11.92016 -11.13193 -10.76236 -10.75277 -10.61160 -10.01345 -9.97945 -9.58705 -9.56016 -9.49361 -8.76100 -8.55624 -8.16173 -7.49390 -6.22830 -4.25028 1.72358 2.33449 2.38411 2.51922 2.88620 2.98468 3.16202 3.22879 3.25058 3.71877 3.89074 4.23424 4.28242 4.62706 4.77093 4.83598 4.91544 5.01521 5.05061 5.09107 5.16286 5.43118 5.52050 5.61084 5.72897 5.91335 6.24195 6.39986 6.46321 6.48353 6.61647 6.67808 6.81294 7.26203 7.41145 7.53585 7.63152 7.83463 8.33773 8.35410 8.59860 8.87238 9.32174 10.89869 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.046492 B = 0.002657 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.103461 B =10535.321220 C =10787.166313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.071 3.929 4 C -0.220 4.220 5 C -0.054 4.054 6 C 0.516 3.484 7 O -0.511 6.511 8 N -0.634 5.634 9 C 0.261 3.739 10 C -0.284 4.284 11 C 0.049 3.951 12 N -0.320 5.320 13 C 0.232 3.768 14 C -0.534 4.534 15 H 0.086 0.914 16 C 0.076 3.924 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 N -0.298 5.298 23 C 0.066 3.934 24 N -0.300 5.300 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.172 0.828 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.411 0.589 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.268 0.732 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.321 -3.974 -11.720 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.076 4.076 4 C -0.232 4.232 5 C -0.095 4.095 6 C 0.302 3.698 7 O -0.384 6.384 8 N -0.283 5.283 9 C 0.007 3.993 10 C -0.315 4.315 11 C -0.100 4.100 12 N -0.102 5.102 13 C 0.113 3.887 14 C -0.572 4.572 15 H 0.104 0.896 16 C -0.128 4.128 17 N -0.525 5.525 18 Si 0.699 3.301 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 N -0.129 5.129 23 C -0.121 4.121 24 N -0.121 5.121 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.189 0.811 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.247 0.753 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.502 -4.530 -11.328 24.722 hybrid contribution 0.312 1.128 0.766 1.398 sum -21.190 -3.403 -10.562 23.919 Atomic orbital electron populations 1.21831 0.74320 1.04554 1.03143 1.48381 1.06568 1.03887 1.57155 1.22245 0.90806 0.93319 1.01216 1.19366 0.93290 0.93674 1.16890 1.19838 0.96262 1.00363 0.93087 1.20805 0.79288 0.77678 0.92056 1.90645 1.52389 1.49545 1.45776 1.42579 1.29884 1.50778 1.05012 1.19160 0.95313 0.99425 0.85356 1.21544 1.07588 1.13210 0.89137 1.22553 0.90811 0.96615 1.00005 1.48605 1.21824 1.37067 1.02698 1.20035 0.87779 0.92363 0.88509 1.21111 0.87199 1.26768 1.22124 0.89630 1.24836 0.94911 0.96217 0.96821 1.69870 0.97931 1.43055 1.41641 0.86908 0.78642 0.81954 0.82606 1.19722 1.20537 1.18876 1.77385 1.19193 1.24505 0.91822 1.23751 0.95217 0.94384 0.98717 1.77345 1.01660 1.08204 1.24913 0.90873 0.89344 0.89521 0.81084 0.88057 0.87649 0.75349 0.82206 0.81503 0.94065 0.93390 0.92187 0.80092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.58 11.47 59.85 0.69 1.27 16 2 N -0.38 -3.82 4.01 -68.16 -0.27 -4.10 16 3 C 0.07 0.67 11.40 -17.22 -0.20 0.47 16 4 C -0.22 -2.29 4.59 -105.05 -0.48 -2.78 16 5 C -0.05 -0.47 6.19 -29.03 -0.18 -0.65 16 6 C 0.52 6.92 7.79 -10.98 -0.09 6.84 16 7 O -0.51 -8.76 13.17 5.54 0.07 -8.69 16 8 N -0.63 -9.31 5.45 -11.13 -0.06 -9.37 16 9 C 0.26 5.15 8.11 -154.40 -1.25 3.90 16 10 C -0.28 -5.55 9.61 -39.83 -0.38 -5.93 16 11 C 0.05 0.96 11.44 -17.24 -0.20 0.77 16 12 N -0.32 -7.28 3.67 -62.56 -0.23 -7.51 16 13 C 0.23 5.52 5.33 -5.19 -0.03 5.49 16 14 C -0.53 -15.09 9.79 -34.44 -0.34 -15.43 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 18 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 22 N -0.30 -6.81 12.42 31.44 0.39 -6.42 16 23 C 0.07 0.75 11.96 -17.36 -0.21 0.54 16 24 N -0.30 -3.76 12.58 30.63 0.39 -3.38 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.41 4.77 8.82 -40.82 -0.36 4.41 16 32 H 0.16 3.07 5.91 -52.49 -0.31 2.76 16 33 H 0.17 2.59 8.06 -52.49 -0.42 2.16 16 34 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 35 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.18 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -37.51 327.29 -5.84 -43.35 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.41 Total: 5.04 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.76 Total: -3.47 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.99 Total: -56.62 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.51 -5.84 -43.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.324 kcal (2) G-P(sol) polarization free energy of solvation -37.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds