Wall clock time and date at job start Tue Mar 31 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34950 * 126.03150 * 2 1 4 4 C 1.35318 * 107.74293 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04202 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47115 * 89.99585 * 5 4 3 7 7 O 1.21297 * 119.99886 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.40151 * 120.00099 * 180.02562 * 8 6 5 10 10 C 1.40416 * 125.97476 * 0.02562 * 9 8 6 11 11 C 1.35237 * 107.86796 * 179.97438 * 10 9 8 12 12 N 1.34970 * 107.85941 * 0.26441 * 11 10 9 13 13 C 1.46504 * 125.96940 * 179.73198 * 12 11 10 14 14 C 1.50699 * 109.46610 * 125.00265 * 13 12 11 15 15 H 1.08001 * 120.00250 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00627 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99417 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47072 * 90.00326 * 18 16 14 20 20 H 1.48507 * 109.46536 * 209.99969 * 18 16 14 21 21 H 1.48498 * 109.47084 * 329.99528 * 18 16 14 22 22 N 1.31213 * 125.97528 * 180.02562 * 9 8 6 23 23 C 1.39873 * 107.92001 * 0.26037 * 4 3 2 24 24 N 1.30837 * 108.20192 * 359.55913 * 23 4 3 25 25 H 1.08998 * 109.47272 * 90.00291 * 1 2 3 26 26 H 1.09004 * 109.47288 * 209.99769 * 1 2 3 27 27 H 1.09003 * 109.47491 * 329.99747 * 1 2 3 28 28 H 1.07997 * 126.12913 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46960 * 329.99741 * 5 4 3 30 30 H 1.08996 * 109.47368 * 209.99845 * 5 4 3 31 31 H 0.96994 * 119.99525 * 0.02562 * 8 6 5 32 32 H 1.08000 * 126.06023 * 359.97438 * 10 9 8 33 33 H 1.08002 * 126.06518 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.46990 * 244.99353 * 13 12 11 35 35 H 1.08992 * 109.47218 * 5.00271 * 13 12 11 36 36 H 0.97001 * 120.00298 * 179.97438 * 17 16 14 37 37 H 1.08003 * 125.89601 * 179.74007 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0002 6 6 5.1763 1.8375 1.4207 7 8 4.5363 1.3769 2.3425 8 7 6.2525 2.6104 1.6673 9 6 6.6326 2.8816 2.9888 10 6 5.9867 2.4152 4.1451 11 6 6.6573 2.8949 5.2170 12 7 7.6852 3.6418 4.7619 13 6 8.6641 4.3530 5.5881 14 6 10.0555 3.9253 5.1982 15 1 10.1966 3.1964 4.4138 16 6 11.1485 4.4646 5.8427 17 7 12.3628 4.0911 5.5029 18 14 10.9045 5.7259 7.1989 19 1 10.7886 5.0311 8.5061 20 1 12.0668 6.6497 7.2307 21 1 9.6642 6.4997 6.9379 22 7 7.6542 3.6156 3.3618 23 6 3.5346 -0.7320 -0.0070 24 7 2.2892 -1.1327 -0.0006 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.9279 2.1194 0.0004 29 1 4.5440 2.4807 -0.5134 30 1 5.5819 1.0347 -0.5146 31 1 6.7639 2.9790 0.9302 32 1 5.1100 1.7851 4.1732 33 1 6.4108 2.7162 6.2533 34 1 8.5575 5.4268 5.4342 35 1 8.4925 4.1175 6.6383 36 1 13.1318 4.4708 5.9562 37 1 4.4054 -1.3708 -0.0130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:51 Heat of formation + Delta-G solvation = 107.565633 kcal Electronic energy + Delta-G solvation = -21428.364136 eV Core-core repulsion = 18015.936457 eV Total energy + Delta-G solvation = -3412.427679 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.27379 -41.99802 -40.30303 -36.15674 -35.14645 -34.52241 -33.23702 -32.51705 -30.95596 -29.54220 -28.70311 -26.74314 -24.57548 -23.07086 -21.99602 -21.94195 -21.13352 -20.67485 -19.09284 -18.28807 -17.77879 -17.64632 -16.92929 -16.54812 -16.21476 -16.08114 -15.44931 -15.21194 -14.97513 -14.78906 -14.34542 -14.24182 -13.95521 -13.80800 -13.76996 -13.38632 -13.18441 -12.97491 -12.68709 -12.51505 -12.25590 -11.82078 -11.55375 -11.50434 -11.40713 -10.86226 -10.78052 -10.30856 -9.72681 -9.29899 -9.05447 -8.36619 -6.46815 0.99538 1.01094 1.34767 1.37627 1.43708 1.50915 1.54827 1.76570 1.88901 2.29511 2.31475 2.55708 2.95885 3.67495 3.82673 4.04077 4.06074 4.21297 4.33528 4.35446 4.47233 4.53960 4.62504 4.71441 4.81414 4.87799 4.91544 4.93063 4.94343 5.21068 5.22871 5.26191 5.72933 5.94308 6.03778 6.19666 6.35257 6.43424 6.59512 6.77993 7.06996 7.16258 7.27095 8.80449 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.046492 B = 0.002657 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.103461 B =10535.321220 C =10787.166313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.072 3.928 4 C -0.240 4.240 5 C -0.040 4.040 6 C 0.518 3.482 7 O -0.548 6.548 8 N -0.628 5.628 9 C 0.267 3.733 10 C -0.295 4.295 11 C 0.057 3.943 12 N -0.346 5.346 13 C 0.240 3.760 14 C -0.546 4.546 15 H 0.026 0.974 16 C 0.014 3.986 17 N -0.942 5.942 18 Si 0.956 3.044 19 H -0.254 1.254 20 H -0.280 1.280 21 H -0.239 1.239 22 N -0.349 5.349 23 C 0.049 3.951 24 N -0.341 5.341 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.204 0.796 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.425 0.575 32 H 0.165 0.835 33 H 0.207 0.793 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.272 0.728 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.428 -2.499 -11.237 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.075 4.075 4 C -0.252 4.252 5 C -0.080 4.080 6 C 0.306 3.694 7 O -0.423 6.423 8 N -0.279 5.279 9 C 0.012 3.988 10 C -0.326 4.326 11 C -0.091 4.091 12 N -0.128 5.128 13 C 0.120 3.880 14 C -0.584 4.584 15 H 0.045 0.955 16 C -0.185 4.185 17 N -0.581 5.581 18 Si 0.777 3.223 19 H -0.178 1.178 20 H -0.206 1.206 21 H -0.162 1.162 22 N -0.180 5.180 23 C -0.136 4.136 24 N -0.163 5.163 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.220 0.780 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.263 0.737 32 H 0.182 0.818 33 H 0.224 0.776 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -23.647 -3.079 -10.890 26.216 hybrid contribution 0.865 0.536 0.482 1.126 sum -22.782 -2.543 -10.408 25.175 Atomic orbital electron populations 1.22160 0.72246 1.05610 1.04646 1.48761 1.07900 1.03494 1.56341 1.22832 0.90630 0.94488 0.99589 1.19626 0.94362 0.93401 1.17801 1.19906 0.96366 1.02068 0.89692 1.21796 0.77877 0.75980 0.93724 1.90622 1.53433 1.50788 1.47506 1.42812 1.30494 1.51012 1.03560 1.19587 0.93963 0.97651 0.87590 1.21732 1.07922 1.13580 0.89379 1.23222 0.89240 0.94721 1.01922 1.48499 1.22822 1.38685 1.02820 1.19867 0.85421 0.92645 0.90082 1.21231 0.90415 1.25894 1.20899 0.95534 1.25930 0.94040 0.98655 0.99891 1.70048 0.99289 1.45052 1.43697 0.85612 0.79435 0.78578 0.78724 1.17847 1.20587 1.16219 1.77304 1.21235 1.26936 0.92483 1.24084 0.95389 0.95472 0.98680 1.77267 1.02526 1.10017 1.26503 0.89137 0.89671 0.87124 0.77964 0.84425 0.85200 0.73704 0.81806 0.77618 0.93636 0.90266 0.91884 0.79223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.47 127.77 1.47 2.36 16 2 N -0.38 -7.20 4.01 -369.56 -1.48 -8.68 16 3 C 0.07 1.20 11.40 83.54 0.95 2.15 16 4 C -0.24 -4.55 4.59 -20.14 -0.09 -4.64 16 5 C -0.04 -0.57 6.19 29.10 0.18 -0.39 16 6 C 0.52 13.05 7.79 87.66 0.68 13.74 16 7 O -0.55 -18.30 13.17 -3.08 -0.04 -18.34 16 8 N -0.63 -17.81 5.45 -307.50 -1.68 -19.48 16 9 C 0.27 10.48 8.11 133.33 1.08 11.56 16 10 C -0.30 -11.32 9.61 22.11 0.21 -11.11 16 11 C 0.06 2.14 11.44 83.52 0.96 3.09 16 12 N -0.35 -15.65 3.67 -351.85 -1.29 -16.94 16 13 C 0.24 11.16 5.33 85.63 0.46 11.61 16 14 C -0.55 -31.66 9.79 25.60 0.25 -31.41 16 15 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 16 C 0.01 0.77 5.47 84.66 0.46 1.24 16 17 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 18 Si 0.96 40.73 27.47 68.60 1.88 42.62 16 19 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 22 N -0.35 -16.15 12.42 -54.45 -0.68 -16.82 16 23 C 0.05 1.09 11.96 85.24 1.02 2.11 16 24 N -0.34 -8.44 12.58 -57.02 -0.72 -9.16 16 25 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.43 9.36 8.82 -92.71 -0.82 8.54 16 32 H 0.16 6.18 5.91 -2.91 -0.02 6.16 16 33 H 0.21 5.77 8.06 -2.91 -0.02 5.74 16 34 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 35 H 0.08 3.18 7.50 -2.39 -0.02 3.16 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -86.09 327.29 4.16 -81.93 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.23 Total: 22.42 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 7.63 Total: 0.30 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -5.54 Total: -128.92 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.04 Total: -18.34 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.88 Total: 42.62 kcal Total: -86.09 4.16 -81.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.492 kcal (2) G-P(sol) polarization free energy of solvation -86.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds