Wall clock time and date at job start Tue Mar 31 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30444 * 125.98446 * 2 1 4 4 N 1.39938 * 108.89731 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.75452 * 180.02562 * 4 3 2 6 6 C 1.34271 * 108.48918 * 359.76011 * 4 3 2 7 7 C 1.38049 * 107.41720 * 0.38035 * 6 4 3 8 8 C 1.47406 * 126.41739 * 179.89253 * 7 6 4 9 9 O 1.21623 * 119.99963 * 179.67913 * 8 7 6 10 10 N 1.34776 * 119.99981 * 359.68510 * 8 7 6 11 11 C 1.40115 * 120.00025 * 180.02562 * 10 8 7 12 12 C 1.40421 * 125.97227 * 359.71479 * 11 10 8 13 13 C 1.35244 * 107.86367 * 179.86369 * 12 11 10 14 14 N 1.34972 * 107.86258 * 0.39250 * 13 12 11 15 15 C 1.46504 * 125.97387 * 179.74842 * 14 13 12 16 16 C 1.50696 * 109.46921 * 124.97709 * 15 14 13 17 17 H 1.08001 * 120.00093 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00011 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99977 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47164 * 60.00336 * 20 18 16 22 22 H 1.48504 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47122 * 299.99946 * 20 18 16 24 24 N 1.31218 * 125.97576 * 180.02562 * 11 10 8 25 25 H 1.09001 * 109.46846 * 269.99560 * 1 2 3 26 26 H 1.09000 * 109.47128 * 30.00047 * 1 2 3 27 27 H 1.09001 * 109.47314 * 149.99778 * 1 2 3 28 28 H 1.09004 * 109.47147 * 89.97586 * 5 4 3 29 29 H 1.09000 * 109.46954 * 209.97169 * 5 4 3 30 30 H 1.08997 * 109.47455 * 329.97406 * 5 4 3 31 31 H 1.08005 * 126.28803 * 180.24843 * 6 4 3 32 32 H 0.96998 * 120.00028 * 359.97438 * 10 8 7 33 33 H 1.07994 * 126.06890 * 0.02562 * 12 11 10 34 34 H 1.08000 * 126.06883 * 180.14367 * 13 12 11 35 35 H 1.08999 * 109.46750 * 244.97685 * 15 14 13 36 36 H 1.08996 * 109.46610 * 4.97526 * 15 14 13 37 37 H 0.96998 * 119.99671 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7786 1.5292 -0.0003 6 6 3.6439 -0.6980 0.0044 7 6 2.3373 -1.1433 -0.0006 8 6 1.8916 -2.5484 -0.0001 9 8 0.7038 -2.8096 0.0010 10 7 2.8005 -3.5436 -0.0007 11 6 2.3769 -4.8792 -0.0007 12 6 1.0443 -5.3219 0.0055 13 6 1.0563 -6.6742 0.0002 14 7 2.3446 -7.0768 -0.0003 15 6 2.8125 -8.4651 -0.0002 16 6 3.7442 -8.6812 -1.1647 17 1 3.9654 -7.8661 -1.8379 18 6 4.3134 -9.9199 -1.3715 19 7 4.0429 -10.9129 -0.5527 20 14 5.4678 -10.1880 -2.8154 21 1 6.6319 -9.2738 -2.6949 22 1 5.9411 -11.5955 -2.8160 23 1 4.7476 -9.9079 -4.0835 24 7 3.1561 -5.9350 -0.0007 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 5.0682 1.7483 1.0275 29 1 5.6058 1.0395 -0.5142 30 1 4.5307 2.4581 -0.5138 31 1 4.5299 -1.3157 0.0090 32 1 3.7478 -3.3353 -0.0018 33 1 0.1657 -4.6939 0.0108 34 1 0.1891 -7.3179 0.0006 35 1 3.3408 -8.6704 0.9308 36 1 1.9582 -9.1363 -0.0888 37 1 4.4431 -11.7843 -0.6984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117712433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:27 Heat of formation + Delta-G solvation = 124.587212 kcal Electronic energy + Delta-G solvation = -21666.252677 eV Core-core repulsion = 18254.563109 eV Total energy + Delta-G solvation = -3411.689568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66159 -40.49371 -38.79585 -34.80282 -34.13935 -33.35918 -31.41309 -30.35446 -29.57159 -29.25108 -26.83809 -26.03466 -23.52933 -22.57565 -21.31730 -20.55161 -19.65820 -19.34695 -17.68109 -16.58202 -16.42777 -16.05756 -16.05163 -15.25479 -14.87238 -14.63809 -14.23834 -13.98190 -13.83034 -13.51089 -13.39055 -12.84856 -12.70962 -12.40121 -12.32146 -12.22930 -12.11290 -11.74173 -11.09293 -11.01318 -10.84957 -10.40456 -10.24539 -9.95189 -9.61053 -9.52360 -9.47198 -8.91113 -8.62278 -8.08239 -7.41216 -6.23633 -4.28745 1.23967 1.96363 2.05060 2.78482 2.89303 3.25592 3.26728 3.28919 3.33548 3.90303 3.94140 4.09207 4.32115 4.33028 4.63667 4.71307 4.93886 4.97807 5.11302 5.12473 5.23064 5.61287 5.61612 5.77536 5.83068 5.90173 6.31396 6.37950 6.48586 6.54682 6.69945 6.89117 7.07022 7.33529 7.47258 7.64253 7.72901 7.91271 8.07665 8.38010 8.66771 8.81286 9.36751 10.85053 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.003181 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.894767 B = 8800.067130 C = 9668.931616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.137 3.863 3 N -0.304 5.304 4 N -0.362 5.362 5 C 0.097 3.903 6 C 0.102 3.898 7 C -0.282 4.282 8 C 0.601 3.399 9 O -0.518 6.518 10 N -0.630 5.630 11 C 0.260 3.740 12 C -0.286 4.286 13 C 0.051 3.949 14 N -0.320 5.320 15 C 0.259 3.741 16 C -0.529 4.529 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 N -0.307 5.307 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.185 0.815 32 H 0.406 0.594 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 21.775 1.919 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.031 4.031 3 N -0.126 5.126 4 N -0.140 5.140 5 C -0.044 4.044 6 C -0.050 4.050 7 C -0.298 4.298 8 C 0.388 3.612 9 O -0.393 6.393 10 N -0.276 5.276 11 C 0.007 3.993 12 C -0.317 4.317 13 C -0.099 4.099 14 N -0.102 5.102 15 C 0.141 3.859 16 C -0.567 4.567 17 H 0.086 0.914 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 N -0.138 5.138 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.202 0.798 32 H 0.241 0.759 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.182 22.239 1.958 22.326 hybrid contribution 0.664 -0.822 -0.717 1.278 sum 0.482 21.417 1.241 21.458 Atomic orbital electron populations 1.20377 0.85449 1.04196 1.03685 1.22479 0.97352 0.88480 0.94781 1.77203 0.85891 1.22588 1.26936 1.48293 1.06227 1.04725 1.54726 1.22005 0.83756 0.94736 1.03930 1.23167 0.99066 0.85350 0.97419 1.20108 0.92209 0.93892 1.23556 1.17095 0.85302 0.82906 0.75866 1.90678 1.16121 1.83384 1.49131 1.42268 1.10024 1.02166 1.73185 1.19065 0.92661 0.84257 1.03309 1.21542 0.96762 0.93499 1.19886 1.22570 0.89229 0.95662 1.02483 1.49063 1.02623 1.06686 1.51810 1.19727 0.96810 0.70114 0.99214 1.21226 1.27588 0.96790 1.11116 0.91355 1.24943 0.96632 0.95471 0.97023 1.69910 1.44035 1.02255 1.37201 0.86387 0.80866 0.77122 0.82113 1.19962 1.21056 1.20037 1.77311 1.17774 0.90520 1.28225 0.90084 0.91092 0.88320 0.90182 0.88925 0.88846 0.79775 0.75938 0.82142 0.81513 0.93759 0.92547 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.92 36.01 0.36 -0.49 16 2 C 0.14 1.71 7.26 -82.02 -0.60 1.11 16 3 N -0.30 -3.66 12.50 33.90 0.42 -3.24 16 4 N -0.36 -3.34 3.98 -67.59 -0.27 -3.61 16 5 C 0.10 0.43 11.44 59.85 0.68 1.11 16 6 C 0.10 0.94 10.99 -16.55 -0.18 0.76 16 7 C -0.28 -3.53 6.13 -105.07 -0.64 -4.18 16 8 C 0.60 9.16 7.78 -12.53 -0.10 9.06 16 9 O -0.52 -9.10 12.04 5.26 0.06 -9.03 16 10 N -0.63 -9.86 5.44 -12.11 -0.07 -9.93 16 11 C 0.26 5.23 8.11 -154.43 -1.25 3.98 16 12 C -0.29 -5.67 9.61 -39.83 -0.38 -6.05 16 13 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 14 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 15 C 0.26 6.57 6.26 -5.19 -0.03 6.54 16 16 C -0.53 -14.68 9.24 -34.44 -0.32 -15.00 16 17 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -25.30 13.29 55.43 0.74 -24.57 16 20 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 N -0.31 -7.05 12.42 31.43 0.39 -6.65 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.17 6.55 -51.93 -0.34 0.83 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.19 0.99 7.46 -52.48 -0.39 0.60 16 32 H 0.41 5.04 7.75 -40.82 -0.32 4.73 16 33 H 0.16 3.07 5.91 -52.49 -0.31 2.76 16 34 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 35 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -34.78 326.58 -6.09 -40.87 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.28 Total: 3.40 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.76 Total: -0.73 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.99 Total: -55.66 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.03 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.78 -6.09 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117712433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.458 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds