Wall clock time and date at job start Tue Mar 31 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30444 * 125.98446 * 2 1 4 4 N 1.39938 * 108.89731 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.75452 * 180.02562 * 4 3 2 6 6 C 1.34271 * 108.48918 * 359.76011 * 4 3 2 7 7 C 1.38049 * 107.41720 * 0.38035 * 6 4 3 8 8 C 1.47406 * 126.41739 * 179.89253 * 7 6 4 9 9 O 1.21623 * 119.99963 * 179.67913 * 8 7 6 10 10 N 1.34776 * 119.99981 * 359.68510 * 8 7 6 11 11 C 1.40115 * 120.00025 * 180.02562 * 10 8 7 12 12 C 1.40421 * 125.97227 * 359.71479 * 11 10 8 13 13 C 1.35244 * 107.86367 * 179.86369 * 12 11 10 14 14 N 1.34972 * 107.86258 * 0.39250 * 13 12 11 15 15 C 1.46504 * 125.97387 * 179.74842 * 14 13 12 16 16 C 1.50696 * 109.46921 * 124.97709 * 15 14 13 17 17 H 1.08001 * 120.00093 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00011 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99977 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47164 * 60.00336 * 20 18 16 22 22 H 1.48504 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47122 * 299.99946 * 20 18 16 24 24 N 1.31218 * 125.97576 * 180.02562 * 11 10 8 25 25 H 1.09001 * 109.46846 * 269.99560 * 1 2 3 26 26 H 1.09000 * 109.47128 * 30.00047 * 1 2 3 27 27 H 1.09001 * 109.47314 * 149.99778 * 1 2 3 28 28 H 1.09004 * 109.47147 * 89.97586 * 5 4 3 29 29 H 1.09000 * 109.46954 * 209.97169 * 5 4 3 30 30 H 1.08997 * 109.47455 * 329.97406 * 5 4 3 31 31 H 1.08005 * 126.28803 * 180.24843 * 6 4 3 32 32 H 0.96998 * 120.00028 * 359.97438 * 10 8 7 33 33 H 1.07994 * 126.06890 * 0.02562 * 12 11 10 34 34 H 1.08000 * 126.06883 * 180.14367 * 13 12 11 35 35 H 1.08999 * 109.46750 * 244.97685 * 15 14 13 36 36 H 1.08996 * 109.46610 * 4.97526 * 15 14 13 37 37 H 0.96998 * 119.99671 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7786 1.5292 -0.0003 6 6 3.6439 -0.6980 0.0044 7 6 2.3373 -1.1433 -0.0006 8 6 1.8916 -2.5484 -0.0001 9 8 0.7038 -2.8096 0.0010 10 7 2.8005 -3.5436 -0.0007 11 6 2.3769 -4.8792 -0.0007 12 6 1.0443 -5.3219 0.0055 13 6 1.0563 -6.6742 0.0002 14 7 2.3446 -7.0768 -0.0003 15 6 2.8125 -8.4651 -0.0002 16 6 3.7442 -8.6812 -1.1647 17 1 3.9654 -7.8661 -1.8379 18 6 4.3134 -9.9199 -1.3715 19 7 4.0429 -10.9129 -0.5527 20 14 5.4678 -10.1880 -2.8154 21 1 6.6319 -9.2738 -2.6949 22 1 5.9411 -11.5955 -2.8160 23 1 4.7476 -9.9079 -4.0835 24 7 3.1561 -5.9350 -0.0007 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 5.0682 1.7483 1.0275 29 1 5.6058 1.0395 -0.5142 30 1 4.5307 2.4581 -0.5138 31 1 4.5299 -1.3157 0.0090 32 1 3.7478 -3.3353 -0.0018 33 1 0.1657 -4.6939 0.0108 34 1 0.1891 -7.3179 0.0006 35 1 3.3408 -8.6704 0.9308 36 1 1.9582 -9.1363 -0.0888 37 1 4.4431 -11.7843 -0.6984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117712433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:26 Heat of formation + Delta-G solvation = 101.114494 kcal Electronic energy + Delta-G solvation = -21667.270530 eV Core-core repulsion = 18254.563109 eV Total energy + Delta-G solvation = -3412.707421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.54819 -42.00529 -40.08007 -36.21859 -35.27303 -34.90177 -32.97862 -31.50171 -30.85310 -30.31188 -28.57701 -26.93803 -25.10364 -23.87442 -22.50366 -21.95781 -20.74830 -20.62460 -18.72615 -18.64012 -17.93789 -17.06351 -16.85972 -16.83497 -16.25233 -15.99550 -15.51513 -15.32381 -14.94581 -14.46296 -14.34492 -14.17294 -14.04806 -13.78114 -13.62700 -13.36555 -13.00374 -12.96046 -12.90901 -12.69836 -12.26186 -12.04569 -11.90074 -11.55699 -11.35887 -10.81673 -10.69921 -10.39109 -9.80721 -9.66834 -9.04119 -8.30944 -6.45285 0.39239 0.96574 1.24633 1.34626 1.40263 1.41882 1.50235 1.54597 1.92367 2.33376 2.49498 2.57502 3.00713 3.32641 3.68396 3.89557 4.05927 4.19918 4.30410 4.40434 4.43118 4.45386 4.72575 4.79580 4.82506 4.93967 4.97379 4.99273 5.02154 5.06697 5.23502 5.51517 5.58666 5.82366 5.86087 5.98333 6.28747 6.35085 6.54823 6.67259 7.08221 7.19899 7.24672 8.76395 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.003181 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.894767 B = 8800.067130 C = 9668.931616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.123 3.877 3 N -0.327 5.327 4 N -0.356 5.356 5 C 0.085 3.915 6 C 0.126 3.874 7 C -0.315 4.315 8 C 0.603 3.397 9 O -0.546 6.546 10 N -0.622 5.622 11 C 0.269 3.731 12 C -0.293 4.293 13 C 0.055 3.945 14 N -0.345 5.345 15 C 0.273 3.727 16 C -0.548 4.548 17 H 0.053 0.947 18 C 0.018 3.982 19 N -0.922 5.922 20 Si 0.972 3.028 21 H -0.271 1.271 22 H -0.274 1.274 23 H -0.270 1.270 24 N -0.345 5.345 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.226 0.774 32 H 0.421 0.579 33 H 0.169 0.831 34 H 0.200 0.800 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 23.166 1.283 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 N -0.150 5.150 4 N -0.132 5.132 5 C -0.054 4.054 6 C -0.028 4.028 7 C -0.330 4.330 8 C 0.393 3.607 9 O -0.423 6.423 10 N -0.271 5.271 11 C 0.014 3.986 12 C -0.324 4.324 13 C -0.093 4.093 14 N -0.127 5.127 15 C 0.154 3.846 16 C -0.586 4.586 17 H 0.072 0.928 18 C -0.182 4.182 19 N -0.560 5.560 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.195 1.195 24 N -0.176 5.176 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.242 0.758 32 H 0.259 0.741 33 H 0.186 0.814 34 H 0.217 0.783 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.179 23.691 1.329 23.758 hybrid contribution 0.257 -1.070 -0.479 1.200 sum 1.436 22.622 0.850 22.683 Atomic orbital electron populations 1.20348 0.85142 1.04044 1.03942 1.22703 0.98039 0.88723 0.94938 1.77156 0.87355 1.22741 1.27702 1.48721 1.06344 1.05389 1.52792 1.22460 0.82778 0.94627 1.05538 1.23700 0.99088 0.85685 0.94354 1.19936 0.93918 0.92097 1.27056 1.17512 0.84816 0.83698 0.74665 1.90649 1.17361 1.83918 1.50412 1.42323 1.11171 1.00443 1.73126 1.19392 0.92645 0.85472 1.01059 1.21743 0.97069 0.93575 1.19986 1.23164 0.89068 0.96369 1.00739 1.48829 1.03699 1.06091 1.54093 1.19322 0.96208 0.71683 0.97368 1.21387 1.28696 0.96753 1.11777 0.92839 1.25746 0.97908 0.95029 0.99531 1.69993 1.44804 1.02681 1.38552 0.85401 0.78756 0.77447 0.78841 1.19657 1.19898 1.19531 1.77231 1.18858 0.91066 1.30482 0.89619 0.89724 0.89883 0.88617 0.85838 0.88457 0.75794 0.74134 0.81405 0.78295 0.96072 0.92466 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.92 71.24 0.71 -0.93 16 2 C 0.12 2.98 7.26 43.52 0.32 3.30 16 3 N -0.33 -7.38 12.50 -46.67 -0.58 -7.96 16 4 N -0.36 -5.56 3.98 -367.76 -1.46 -7.02 16 5 C 0.08 0.45 11.44 127.77 1.46 1.91 16 6 C 0.13 1.95 10.99 84.28 0.93 2.88 16 7 C -0.31 -7.46 6.13 -20.16 -0.12 -7.59 16 8 C 0.60 17.99 7.78 86.66 0.67 18.67 16 9 O -0.55 -19.23 12.04 -4.10 -0.05 -19.28 16 10 N -0.62 -18.87 5.44 -310.47 -1.69 -20.56 16 11 C 0.27 10.74 8.11 133.34 1.08 11.82 16 12 C -0.29 -11.54 9.61 22.11 0.21 -11.33 16 13 C 0.06 2.19 11.44 83.52 0.96 3.14 16 14 N -0.35 -16.25 3.67 -351.84 -1.29 -17.54 16 15 C 0.27 14.18 6.26 85.63 0.54 14.71 16 16 C -0.55 -30.83 9.24 25.60 0.24 -30.60 16 17 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 18 C 0.02 1.00 5.46 84.65 0.46 1.46 16 19 N -0.92 -52.18 13.29 21.45 0.28 -51.89 16 20 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 N -0.35 -15.96 12.42 -54.47 -0.68 -16.64 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 2.03 6.55 -2.39 -0.02 2.02 16 28 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.23 1.44 7.46 -2.91 -0.02 1.42 16 32 H 0.42 9.74 7.75 -92.71 -0.72 9.02 16 33 H 0.17 6.39 5.91 -2.91 -0.02 6.37 16 34 H 0.20 6.27 8.06 -2.91 -0.02 6.25 16 35 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 2.91 8.07 -2.39 -0.02 2.89 16 37 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -76.01 326.58 4.40 -71.61 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.40 Total: 16.55 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 7.44 Total: 7.46 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.42 Total: -121.61 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -76.01 4.40 -71.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117712433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.724 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds