Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39673 * 126.06746 * 2 1 4 4 C 1.38423 * 105.35643 * 180.14752 * 3 2 1 5 5 C 1.47129 * 126.88387 * 179.86252 * 4 3 2 6 6 O 1.21650 * 119.99842 * 184.98944 * 5 4 3 7 7 N 1.34771 * 120.00188 * 4.99207 * 5 4 3 8 8 C 1.40075 * 119.99963 * 174.75346 * 7 5 4 9 9 C 1.40423 * 125.97729 * 359.97438 * 8 7 5 10 10 C 1.35239 * 107.86719 * 179.75528 * 9 8 7 11 11 N 1.34970 * 107.86272 * 0.36825 * 10 9 8 12 12 C 1.46502 * 125.97339 * 179.89397 * 11 10 9 13 13 C 1.50705 * 109.47038 * 124.71499 * 12 11 10 14 14 H 1.07994 * 119.99774 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99886 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00053 * 359.71928 * 15 13 12 17 17 Si 1.86801 * 120.00075 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46971 * 269.72187 * 17 15 13 19 19 H 1.48501 * 109.46932 * 29.71938 * 17 15 13 20 20 H 1.48491 * 109.47292 * 149.72058 * 17 15 13 21 21 N 1.31239 * 125.97551 * 179.97438 * 8 7 5 22 22 N 1.36604 * 106.22914 * 359.59730 * 4 3 2 23 23 C 1.46500 * 125.19109 * 180.23696 * 22 4 3 24 24 N 1.28441 * 109.61822 * 0.26497 * 22 4 3 25 25 H 1.08994 * 109.47096 * 270.27881 * 1 2 3 26 26 H 1.08997 * 109.47012 * 30.28380 * 1 2 3 27 27 H 1.09001 * 109.46622 * 150.28093 * 1 2 3 28 28 H 1.07997 * 127.31993 * 0.02562 * 3 2 1 29 29 H 0.97002 * 119.99914 * 354.74298 * 7 5 4 30 30 H 1.07996 * 126.06516 * 359.97438 * 9 8 7 31 31 H 1.07999 * 126.07145 * 180.24729 * 10 9 8 32 32 H 1.09003 * 109.47050 * 4.71568 * 12 11 10 33 33 H 1.09000 * 109.47267 * 244.71590 * 12 11 10 34 34 H 0.97006 * 120.00428 * 0.28213 * 16 15 13 35 35 H 1.09010 * 109.46674 * 94.76735 * 23 22 4 36 36 H 1.08994 * 109.47186 * 214.76465 * 23 22 4 37 37 H 1.08996 * 109.47128 * 334.76836 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6241 0.6395 -0.0034 5 6 4.8663 1.4279 -0.0077 6 8 5.9420 0.8677 -0.1020 7 7 4.8124 2.7708 0.0931 8 6 5.9955 3.5131 0.1998 9 6 7.2988 2.9905 0.2151 10 6 8.1603 4.0272 0.3251 11 7 7.4348 5.1637 0.3861 12 6 7.9710 6.5213 0.5112 13 6 7.4459 7.3746 -0.6145 14 1 6.7798 6.9481 -1.3498 15 6 7.8168 8.6994 -0.7062 16 7 8.6244 9.2198 0.1918 17 14 7.1654 9.7573 -2.1012 18 1 8.0954 9.6806 -3.2564 19 1 5.8254 9.2657 -2.5110 20 1 7.0576 11.1663 -1.6451 21 7 6.0798 4.8188 0.3030 22 7 3.5174 -0.7224 0.0039 23 6 4.6450 -1.6576 0.0085 24 7 2.2775 -1.0578 0.0057 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3632 -0.8925 -0.5095 28 1 2.0206 2.1639 0.0004 29 1 3.9544 3.2233 0.0915 30 1 7.5659 1.9463 0.1471 31 1 9.2374 3.9578 0.3602 32 1 9.0595 6.4877 0.4645 33 1 7.6614 6.9478 1.4654 34 1 8.9625 8.6706 0.9164 35 1 4.8706 -1.9497 1.0342 36 1 4.3855 -2.5424 -0.5726 37 1 5.5179 -1.1764 -0.4326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117713914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = 124.082760 kcal Electronic energy + Delta-G solvation = -21760.382471 eV Core-core repulsion = 18348.671029 eV Total energy + Delta-G solvation = -3411.711442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.79373 -40.79793 -39.19860 -35.21270 -34.18146 -33.72804 -31.68690 -30.48664 -29.91539 -29.47376 -26.46946 -25.76564 -24.17899 -22.88187 -21.74575 -20.94042 -19.85616 -19.43067 -17.79288 -17.24192 -16.61965 -16.58607 -16.24389 -15.28457 -15.11930 -14.52721 -14.10171 -14.04618 -13.81704 -13.73414 -13.49904 -13.25935 -12.69670 -12.61305 -12.52221 -12.45653 -12.29744 -11.89227 -11.21319 -10.92968 -10.85735 -10.59217 -10.22438 -10.19689 -9.85287 -9.39219 -9.09779 -9.04633 -8.61214 -8.31103 -7.62680 -6.61682 -4.36060 0.96507 2.04060 2.26994 2.53588 2.72806 2.92567 3.35012 3.39075 3.55174 3.60553 3.65776 4.19733 4.32266 4.38452 4.73705 4.92026 4.98752 5.10159 5.12106 5.30177 5.32483 5.37378 5.39354 5.58001 5.61123 5.72783 6.04613 6.23478 6.29939 6.39525 6.47899 6.52545 6.69123 7.17715 7.33023 7.62598 7.75392 7.81277 7.97436 8.30259 8.44407 8.57368 9.32241 10.76099 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024923 B = 0.003169 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.170390 B = 8834.588884 C = 9661.849630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.022 3.978 3 C -0.184 4.184 4 C -0.031 4.031 5 C 0.600 3.400 6 O -0.519 6.519 7 N -0.613 5.613 8 C 0.258 3.742 9 C -0.284 4.284 10 C 0.052 3.948 11 N -0.315 5.315 12 C 0.248 3.752 13 C -0.609 4.609 14 H 0.064 0.936 15 C 0.023 3.977 16 N -0.905 5.905 17 Si 1.079 2.921 18 H -0.285 1.285 19 H -0.286 1.286 20 H -0.281 1.281 21 N -0.296 5.296 22 N -0.255 5.255 23 C 0.079 3.921 24 N -0.276 5.276 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.415 0.585 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.267 0.733 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -18.691 0.460 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.134 4.134 3 C -0.213 4.213 4 C -0.160 4.160 5 C 0.386 3.614 6 O -0.394 6.394 7 N -0.260 5.260 8 C 0.005 3.995 9 C -0.315 4.315 10 C -0.097 4.097 11 N -0.096 5.096 12 C 0.130 3.870 13 C -0.647 4.647 14 H 0.083 0.917 15 C -0.181 4.181 16 N -0.540 5.540 17 Si 0.906 3.094 18 H -0.212 1.212 19 H -0.212 1.212 20 H -0.207 1.207 21 N -0.127 5.127 22 N -0.042 5.042 23 C -0.060 4.060 24 N -0.110 5.110 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.181 0.819 29 H 0.251 0.749 30 H 0.179 0.821 31 H 0.187 0.813 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.485 -17.622 -0.139 20.506 hybrid contribution 0.139 -1.201 0.651 1.373 sum -10.345 -18.823 0.512 21.485 Atomic orbital electron populations 1.20097 0.86254 1.03297 1.02857 1.22016 0.97202 0.88676 1.05468 1.22197 0.90200 1.00574 1.08348 1.21107 0.95130 0.85477 1.14255 1.16688 0.86844 0.81125 0.76782 1.90709 1.29468 1.70311 1.48878 1.41933 1.07770 1.05052 1.71210 1.18977 0.86366 0.90349 1.03792 1.21504 0.89570 1.00773 1.19639 1.22575 0.98765 0.86078 1.02322 1.48831 1.01656 1.07682 1.51453 1.19800 0.93980 0.74010 0.99176 1.22128 1.33139 0.97454 1.11998 0.91745 1.25930 0.94785 0.95866 1.01559 1.70825 1.30277 1.39541 1.13375 0.83384 0.75950 0.75672 0.74377 1.21193 1.21191 1.20685 1.77383 0.98161 1.09852 1.27283 1.45531 1.05180 1.04104 1.49374 1.22469 0.86106 0.92734 1.04724 1.73139 0.89419 1.27832 1.20645 0.90757 0.90365 0.90999 0.81911 0.74859 0.82111 0.81337 0.93527 0.94650 0.92232 0.89710 0.88912 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.45 36.01 0.38 -0.09 16 2 C 0.02 0.24 7.22 -82.47 -0.60 -0.36 16 3 C -0.18 -1.98 10.44 -38.98 -0.41 -2.39 16 4 C -0.03 -0.39 6.96 -82.07 -0.57 -0.96 16 5 C 0.60 8.77 7.76 -12.65 -0.10 8.67 16 6 O -0.52 -8.39 11.73 5.23 0.06 -8.33 16 7 N -0.61 -9.40 5.43 -12.19 -0.07 -9.47 16 8 C 0.26 5.04 8.10 -154.45 -1.25 3.79 16 9 C -0.28 -5.38 9.61 -39.83 -0.38 -5.77 16 10 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 11 N -0.31 -7.17 3.67 -62.56 -0.23 -7.40 16 12 C 0.25 6.16 5.57 -5.19 -0.03 6.13 16 13 C -0.61 -16.89 9.24 -34.44 -0.32 -17.21 16 14 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 15 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 16 N -0.90 -26.06 13.65 55.43 0.76 -25.30 16 17 Si 1.08 24.68 29.90 -169.99 -5.08 19.60 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 N -0.30 -6.69 12.42 31.43 0.39 -6.30 16 22 N -0.25 -3.07 3.75 -63.89 -0.24 -3.31 16 23 C 0.08 0.72 11.01 59.85 0.66 1.38 16 24 N -0.28 -3.37 11.90 33.64 0.40 -2.97 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.16 1.30 7.58 -52.49 -0.40 0.91 16 29 H 0.42 5.26 7.85 -40.82 -0.32 4.94 16 30 H 0.16 2.89 5.93 -52.49 -0.31 2.57 16 31 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 32 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 33 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16 34 H 0.27 7.51 7.22 -40.82 -0.29 7.22 16 35 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.12 1.17 5.96 -51.93 -0.31 0.86 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -33.68 324.09 -6.24 -39.92 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.20 Total: 4.12 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.91 Total: -5.44 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 1.01 Total: -54.76 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.06 Total: -8.33 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.60 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.68 -6.24 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117713914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.004 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds