Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39673 * 126.06746 * 2 1 4 4 C 1.38423 * 105.35643 * 180.14752 * 3 2 1 5 5 C 1.47129 * 126.88387 * 179.86252 * 4 3 2 6 6 O 1.21650 * 119.99842 * 184.98944 * 5 4 3 7 7 N 1.34771 * 120.00188 * 4.99207 * 5 4 3 8 8 C 1.40075 * 119.99963 * 174.75346 * 7 5 4 9 9 C 1.40423 * 125.97729 * 359.97438 * 8 7 5 10 10 C 1.35239 * 107.86719 * 179.75528 * 9 8 7 11 11 N 1.34970 * 107.86272 * 0.36825 * 10 9 8 12 12 C 1.46502 * 125.97339 * 179.89397 * 11 10 9 13 13 C 1.50705 * 109.47038 * 124.71499 * 12 11 10 14 14 H 1.07994 * 119.99774 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99886 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00053 * 359.71928 * 15 13 12 17 17 Si 1.86801 * 120.00075 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46971 * 269.72187 * 17 15 13 19 19 H 1.48501 * 109.46932 * 29.71938 * 17 15 13 20 20 H 1.48491 * 109.47292 * 149.72058 * 17 15 13 21 21 N 1.31239 * 125.97551 * 179.97438 * 8 7 5 22 22 N 1.36604 * 106.22914 * 359.59730 * 4 3 2 23 23 C 1.46500 * 125.19109 * 180.23696 * 22 4 3 24 24 N 1.28441 * 109.61822 * 0.26497 * 22 4 3 25 25 H 1.08994 * 109.47096 * 270.27881 * 1 2 3 26 26 H 1.08997 * 109.47012 * 30.28380 * 1 2 3 27 27 H 1.09001 * 109.46622 * 150.28093 * 1 2 3 28 28 H 1.07997 * 127.31993 * 0.02562 * 3 2 1 29 29 H 0.97002 * 119.99914 * 354.74298 * 7 5 4 30 30 H 1.07996 * 126.06516 * 359.97438 * 9 8 7 31 31 H 1.07999 * 126.07145 * 180.24729 * 10 9 8 32 32 H 1.09003 * 109.47050 * 4.71568 * 12 11 10 33 33 H 1.09000 * 109.47267 * 244.71590 * 12 11 10 34 34 H 0.97006 * 120.00428 * 0.28213 * 16 15 13 35 35 H 1.09010 * 109.46674 * 94.76735 * 23 22 4 36 36 H 1.08994 * 109.47186 * 214.76465 * 23 22 4 37 37 H 1.08996 * 109.47128 * 334.76836 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6241 0.6395 -0.0034 5 6 4.8663 1.4279 -0.0077 6 8 5.9420 0.8677 -0.1020 7 7 4.8124 2.7708 0.0931 8 6 5.9955 3.5131 0.1998 9 6 7.2988 2.9905 0.2151 10 6 8.1603 4.0272 0.3251 11 7 7.4348 5.1637 0.3861 12 6 7.9710 6.5213 0.5112 13 6 7.4459 7.3746 -0.6145 14 1 6.7798 6.9481 -1.3498 15 6 7.8168 8.6994 -0.7062 16 7 8.6244 9.2198 0.1918 17 14 7.1654 9.7573 -2.1012 18 1 8.0954 9.6806 -3.2564 19 1 5.8254 9.2657 -2.5110 20 1 7.0576 11.1663 -1.6451 21 7 6.0798 4.8188 0.3030 22 7 3.5174 -0.7224 0.0039 23 6 4.6450 -1.6576 0.0085 24 7 2.2775 -1.0578 0.0057 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3632 -0.8925 -0.5095 28 1 2.0206 2.1639 0.0004 29 1 3.9544 3.2233 0.0915 30 1 7.5659 1.9463 0.1471 31 1 9.2374 3.9578 0.3602 32 1 9.0595 6.4877 0.4645 33 1 7.6614 6.9478 1.4654 34 1 8.9625 8.6706 0.9164 35 1 4.8706 -1.9497 1.0342 36 1 4.3855 -2.5424 -0.5726 37 1 5.5179 -1.1764 -0.4326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117713914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = 102.037629 kcal Electronic energy + Delta-G solvation = -21761.338419 eV Core-core repulsion = 18348.671029 eV Total energy + Delta-G solvation = -3412.667391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.67175 -42.30658 -40.48710 -36.60191 -35.70788 -34.91974 -33.11164 -31.80971 -31.05459 -30.56248 -28.27092 -26.53493 -25.62388 -24.52370 -22.86043 -22.34735 -21.20553 -20.53652 -19.24611 -18.81060 -18.12574 -17.50739 -17.31043 -16.79273 -16.39589 -15.77296 -15.69723 -15.55149 -15.04879 -14.90581 -14.34349 -14.20633 -14.13897 -13.96434 -13.73422 -13.29869 -13.25901 -13.20175 -13.13578 -12.60897 -12.12324 -11.97147 -11.77906 -11.70719 -11.18278 -11.02326 -10.68724 -10.32181 -9.89989 -9.87350 -9.25773 -8.77959 -6.55880 -0.04850 0.92796 1.02627 1.43797 1.51636 1.58709 1.59648 1.68725 1.79215 2.21783 2.23820 2.48986 3.01551 3.23137 3.44846 3.82894 3.95869 4.10732 4.26842 4.29220 4.35659 4.51920 4.59110 4.60098 4.69754 4.76761 4.78924 4.90560 4.98034 5.05121 5.12193 5.48427 5.54561 5.69174 5.73760 5.90390 6.04240 6.25798 6.40930 6.72848 6.91057 6.97235 7.19690 8.58901 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024923 B = 0.003169 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.170390 B = 8834.588884 C = 9661.849630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.015 3.985 3 C -0.176 4.176 4 C -0.053 4.053 5 C 0.606 3.394 6 O -0.536 6.536 7 N -0.608 5.608 8 C 0.268 3.732 9 C -0.288 4.288 10 C 0.058 3.942 11 N -0.341 5.341 12 C 0.259 3.741 13 C -0.622 4.622 14 H 0.046 0.954 15 C -0.018 4.018 16 N -0.924 5.924 17 Si 1.121 2.879 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.276 1.276 21 N -0.340 5.340 22 N -0.261 5.261 23 C 0.075 3.925 24 N -0.290 5.290 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.188 0.812 29 H 0.427 0.573 30 H 0.174 0.826 31 H 0.204 0.796 32 H 0.056 0.944 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 -19.592 -0.164 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 C -0.205 4.205 4 C -0.181 4.181 5 C 0.393 3.607 6 O -0.412 6.412 7 N -0.257 5.257 8 C 0.013 3.987 9 C -0.319 4.319 10 C -0.090 4.090 11 N -0.123 5.123 12 C 0.139 3.861 13 C -0.660 4.660 14 H 0.064 0.936 15 C -0.218 4.218 16 N -0.560 5.560 17 Si 0.942 3.058 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.201 1.201 21 N -0.170 5.170 22 N -0.049 5.049 23 C -0.064 4.064 24 N -0.125 5.125 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.205 0.795 29 H 0.265 0.735 30 H 0.191 0.809 31 H 0.221 0.779 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.647 -18.566 -0.753 21.930 hybrid contribution 0.430 -1.103 0.876 1.473 sum -11.217 -19.668 0.123 22.642 Atomic orbital electron populations 1.20245 0.83789 1.04425 1.03944 1.22648 0.98777 0.88161 1.04432 1.22599 0.89374 1.01929 1.06593 1.20935 0.94749 0.85948 1.16457 1.16935 0.87408 0.80684 0.75717 1.90687 1.30436 1.70528 1.49521 1.41973 1.07134 1.05222 1.71334 1.19279 0.87999 0.89815 1.01562 1.21736 0.89400 1.01213 1.19510 1.23214 1.00455 0.84906 1.00472 1.48606 1.02267 1.07589 1.53830 1.19454 0.94220 0.75077 0.97314 1.22311 1.32943 0.98259 1.12455 0.93601 1.27252 0.94301 0.97230 1.03011 1.70918 1.31447 1.39675 1.13989 0.82852 0.76062 0.74420 0.72425 1.19422 1.20451 1.20112 1.77297 0.98511 1.11523 1.29706 1.45807 1.05654 1.04151 1.49302 1.22614 0.85169 0.92874 1.05755 1.73150 0.89640 1.28657 1.21064 0.89609 0.88532 0.90608 0.79468 0.73467 0.80921 0.77914 0.92662 0.96408 0.92884 0.88589 0.86980 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.45 71.24 0.74 -0.01 16 2 C 0.02 0.30 7.22 43.05 0.31 0.61 16 3 C -0.18 -3.42 10.44 22.66 0.24 -3.18 16 4 C -0.05 -1.26 6.96 40.78 0.28 -0.97 16 5 C 0.61 17.11 7.76 86.58 0.67 17.78 16 6 O -0.54 -16.91 11.73 -4.19 -0.05 -16.96 16 7 N -0.61 -18.13 5.43 -310.73 -1.69 -19.82 16 8 C 0.27 10.35 8.10 133.35 1.08 11.43 16 9 C -0.29 -10.66 9.61 22.11 0.21 -10.44 16 10 C 0.06 2.17 11.43 83.52 0.96 3.13 16 11 N -0.34 -15.62 3.67 -351.83 -1.29 -16.91 16 12 C 0.26 13.04 5.57 85.63 0.48 13.52 16 13 C -0.62 -34.89 9.24 25.60 0.24 -34.66 16 14 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 15 C -0.02 -1.01 5.46 84.66 0.46 -0.54 16 16 N -0.92 -53.45 13.65 21.45 0.29 -53.16 16 17 Si 1.12 49.20 29.90 68.60 2.05 51.25 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 N -0.34 -15.46 12.42 -54.48 -0.68 -16.14 16 22 N -0.26 -5.97 3.75 -356.04 -1.33 -7.31 16 23 C 0.07 1.28 11.01 127.77 1.41 2.69 16 24 N -0.29 -6.62 11.90 -47.49 -0.57 -7.18 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.19 2.50 7.58 -2.91 -0.02 2.48 16 29 H 0.43 10.36 7.85 -92.71 -0.73 9.63 16 30 H 0.17 5.98 5.93 -2.91 -0.02 5.96 16 31 H 0.20 5.91 8.06 -2.91 -0.02 5.89 16 32 H 0.06 2.66 7.94 -2.39 -0.02 2.64 16 33 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 34 H 0.26 14.92 7.22 -92.70 -0.67 14.25 16 35 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.11 2.07 5.96 -2.39 -0.01 2.06 16 Total: -1.00 -72.11 324.09 4.30 -67.81 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.49 Total: 19.09 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 7.08 Total: -0.67 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.26 Total: -120.52 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.05 Total: -16.96 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.25 kcal Total: -72.11 4.30 -67.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117713914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.847 kcal (2) G-P(sol) polarization free energy of solvation -72.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds