Wall clock time and date at job start Tue Mar 31 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35318 * 126.12322 * 2 1 4 4 C 1.39869 * 107.91864 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.90023 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47115 * 124.99813 * 5 4 3 7 7 O 1.21297 * 119.99886 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.40151 * 120.00099 * 180.02562 * 8 6 5 10 10 C 1.40416 * 125.97476 * 0.02562 * 9 8 6 11 11 C 1.35237 * 107.86796 * 179.97438 * 10 9 8 12 12 N 1.34970 * 107.85941 * 0.26441 * 11 10 9 13 13 C 1.46504 * 125.96940 * 179.73198 * 12 11 10 14 14 C 1.50699 * 109.46610 * 125.00265 * 13 12 11 15 15 H 1.08001 * 120.00250 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99479 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00617 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46688 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47180 * 119.99918 * 18 16 14 21 21 H 1.48504 * 109.47157 * 240.00277 * 18 16 14 22 22 N 1.31213 * 125.97528 * 180.02562 * 9 8 6 23 23 N 1.30845 * 108.20405 * 0.26225 * 4 3 2 24 24 N 1.34951 * 126.13095 * 180.02562 * 2 1 3 25 25 H 0.97002 * 126.02928 * 359.96987 * 24 2 1 26 26 H 1.09004 * 109.46724 * 90.00388 * 1 2 3 27 27 H 1.09002 * 109.47249 * 209.99567 * 1 2 3 28 28 H 1.08992 * 109.47504 * 330.00036 * 1 2 3 29 29 H 1.07998 * 126.04472 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46960 * 4.99969 * 5 4 3 31 31 H 1.08996 * 109.47368 * 245.00073 * 5 4 3 32 32 H 0.96994 * 119.99525 * 0.02562 * 8 6 5 33 33 H 1.08000 * 126.06023 * 359.97438 * 10 9 8 34 34 H 1.08002 * 126.06518 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.46990 * 244.99353 * 13 12 11 36 36 H 1.08992 * 109.47218 * 5.00271 * 13 12 11 37 37 H 0.97001 * 119.99807 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 -0.0006 5 6 4.8542 1.5396 -0.0013 6 6 5.7395 1.1742 1.1622 7 8 5.4116 0.2835 1.9175 8 7 6.8957 1.8370 1.3636 9 6 7.7192 1.4968 2.4453 10 6 7.4642 0.4916 3.3920 11 6 8.4935 0.4770 4.2691 12 7 9.3660 1.4381 3.8996 13 6 10.6207 1.7689 4.5797 14 6 11.7596 1.6971 3.5954 15 1 11.5680 1.4312 2.5664 16 6 13.0462 1.9709 4.0086 17 7 13.2794 2.2952 5.2617 18 14 14.4581 1.8811 2.7888 19 1 13.9346 1.4969 1.4533 20 1 15.1196 3.2076 2.6989 21 1 15.4424 0.8669 3.2447 22 7 8.8635 2.0619 2.7505 23 7 3.6334 -0.6524 -0.0066 24 7 2.3027 -1.0900 -0.0005 25 1 2.0055 -2.0133 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.9740 2.1211 0.0004 30 1 4.5483 2.5820 0.0882 31 1 5.4027 1.4007 -0.9329 32 1 7.1576 2.5495 0.7598 33 1 6.5995 -0.1549 3.4155 34 1 8.5964 -0.1833 5.1176 35 1 10.5573 2.7772 4.9889 36 1 10.7939 1.0588 5.3882 37 1 14.1845 2.4881 5.5524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119181038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:39 Heat of formation + Delta-G solvation = 117.032297 kcal Electronic energy + Delta-G solvation = -21358.699605 eV Core-core repulsion = 17946.682432 eV Total energy + Delta-G solvation = -3412.017173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45683 -40.55098 -39.05943 -34.67969 -33.58033 -33.28734 -31.85126 -30.94467 -29.30064 -28.84557 -27.21111 -26.51580 -23.25815 -22.00746 -20.84434 -20.47410 -19.68511 -19.29441 -17.57401 -16.84794 -16.57827 -16.41059 -15.44581 -15.26985 -14.99814 -14.32020 -14.20107 -13.96818 -13.79418 -13.54784 -13.25075 -13.01420 -12.73082 -12.58299 -12.32030 -12.22537 -12.09620 -11.69471 -11.01907 -10.85485 -10.68026 -10.36008 -10.23850 -9.94355 -9.58711 -9.44988 -9.36597 -8.76009 -8.61706 -8.07056 -7.40842 -6.22367 -4.27129 1.71176 2.42027 2.47352 2.68188 2.95420 3.03705 3.23936 3.31322 3.38453 3.78955 3.96046 4.30297 4.34315 4.43988 4.73758 4.88471 4.97990 5.07686 5.12827 5.21839 5.42506 5.47724 5.54770 5.61749 5.86599 5.91977 6.32782 6.43549 6.55643 6.69224 6.90042 7.08388 7.11814 7.48088 7.56400 7.64105 7.74393 7.92296 8.08903 8.36544 8.68777 8.83580 9.38425 10.86389 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.042881 B = 0.002619 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.815521 B =10689.716505 C =10940.684951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.080 3.920 3 C -0.264 4.264 4 C 0.089 3.911 5 C -0.055 4.055 6 C 0.520 3.480 7 O -0.501 6.501 8 N -0.633 5.633 9 C 0.259 3.741 10 C -0.287 4.287 11 C 0.050 3.950 12 N -0.320 5.320 13 C 0.258 3.742 14 C -0.526 4.526 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.908 3.092 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 N -0.305 5.305 23 N -0.258 5.258 24 N -0.475 5.475 25 H 0.436 0.564 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.411 0.589 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.924 -2.149 -10.758 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.293 4.293 4 C -0.079 4.079 5 C -0.097 4.097 6 C 0.304 3.696 7 O -0.373 6.373 8 N -0.281 5.281 9 C 0.006 3.994 10 C -0.318 4.318 11 C -0.100 4.100 12 N -0.102 5.102 13 C 0.141 3.859 14 C -0.565 4.565 15 H 0.088 0.912 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 N -0.136 5.136 23 N -0.080 5.080 24 N -0.184 5.184 25 H 0.280 0.720 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.165 0.835 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.246 0.754 33 H 0.176 0.824 34 H 0.184 0.816 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.354 -2.863 -10.346 24.798 hybrid contribution -0.144 -0.018 -0.533 0.552 sum -22.497 -2.882 -10.879 25.155 Atomic orbital electron populations 1.20443 0.87341 1.03975 1.03274 1.21082 0.94549 0.87814 1.01408 1.21073 0.91293 0.99206 1.17759 1.21443 0.94349 0.91592 1.00524 1.19978 0.91781 0.99556 0.98401 1.20344 0.80638 0.82046 0.86574 1.90685 1.71708 1.29152 1.45761 1.42450 1.20079 1.38000 1.27603 1.19105 0.91834 0.97386 0.91083 1.21523 1.04167 1.06705 0.99397 1.22551 0.91306 0.95171 1.00971 1.49068 1.18152 1.24384 1.18598 1.19740 0.76049 0.98015 0.92145 1.21305 0.90769 1.47909 0.96505 0.91240 1.24958 0.98919 0.94648 0.95665 1.69934 1.21658 1.46416 1.15405 0.86270 0.81336 0.77779 0.81105 1.19553 1.20697 1.20792 1.77318 1.09761 1.22714 1.03854 1.77455 0.95546 1.12390 1.22660 1.46341 1.04170 1.08205 1.59665 0.72008 0.90223 0.91140 0.89562 0.83481 0.86500 0.86807 0.75418 0.82390 0.81584 0.93721 0.92581 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.43 36.00 0.38 -0.04 16 2 C 0.08 0.69 7.21 -82.26 -0.59 0.10 16 3 C -0.26 -2.59 10.64 -40.01 -0.43 -3.02 16 4 C 0.09 1.07 6.01 -82.40 -0.50 0.58 16 5 C -0.06 -0.55 6.28 -29.03 -0.18 -0.73 16 6 C 0.52 7.67 7.79 -10.98 -0.09 7.58 16 7 O -0.50 -9.35 12.70 5.54 0.07 -9.28 16 8 N -0.63 -9.82 5.45 -11.13 -0.06 -9.89 16 9 C 0.26 5.33 8.11 -154.40 -1.25 4.07 16 10 C -0.29 -5.93 9.61 -39.83 -0.38 -6.31 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 12 N -0.32 -7.62 3.67 -62.56 -0.23 -7.85 16 13 C 0.26 6.66 6.26 -5.19 -0.03 6.63 16 14 C -0.53 -14.83 9.23 -34.44 -0.32 -15.15 16 15 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 18 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 N -0.31 -7.15 12.42 31.44 0.39 -6.76 16 23 N -0.26 -3.58 12.06 33.67 0.41 -3.17 16 24 N -0.47 -4.82 7.36 33.48 0.25 -4.57 16 25 H 0.44 3.08 8.96 -182.61 -1.64 1.44 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.41 4.96 8.82 -40.82 -0.36 4.60 16 33 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 34 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 35 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -36.66 329.09 -7.84 -44.50 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.65 Total: 4.20 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -3.69 Total: -3.85 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 1.49 Total: -57.07 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.66 -7.84 -44.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119181038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.536 kcal (2) G-P(sol) polarization free energy of solvation -36.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds