Wall clock time and date at job start Tue Mar 31 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35318 * 126.12322 * 2 1 4 4 C 1.39869 * 107.91864 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.90023 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47115 * 124.99813 * 5 4 3 7 7 O 1.21297 * 119.99886 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.40151 * 120.00099 * 180.02562 * 8 6 5 10 10 C 1.40416 * 125.97476 * 0.02562 * 9 8 6 11 11 C 1.35237 * 107.86796 * 179.97438 * 10 9 8 12 12 N 1.34970 * 107.85941 * 0.26441 * 11 10 9 13 13 C 1.46504 * 125.96940 * 179.73198 * 12 11 10 14 14 C 1.50699 * 109.46610 * 125.00265 * 13 12 11 15 15 H 1.08001 * 120.00250 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99479 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00617 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46688 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47180 * 119.99918 * 18 16 14 21 21 H 1.48504 * 109.47157 * 240.00277 * 18 16 14 22 22 N 1.31213 * 125.97528 * 180.02562 * 9 8 6 23 23 N 1.30845 * 108.20405 * 0.26225 * 4 3 2 24 24 N 1.34951 * 126.13095 * 180.02562 * 2 1 3 25 25 H 0.97002 * 126.02928 * 359.96987 * 24 2 1 26 26 H 1.09004 * 109.46724 * 90.00388 * 1 2 3 27 27 H 1.09002 * 109.47249 * 209.99567 * 1 2 3 28 28 H 1.08992 * 109.47504 * 330.00036 * 1 2 3 29 29 H 1.07998 * 126.04472 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46960 * 4.99969 * 5 4 3 31 31 H 1.08996 * 109.47368 * 245.00073 * 5 4 3 32 32 H 0.96994 * 119.99525 * 0.02562 * 8 6 5 33 33 H 1.08000 * 126.06023 * 359.97438 * 10 9 8 34 34 H 1.08002 * 126.06518 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.46990 * 244.99353 * 13 12 11 36 36 H 1.08992 * 109.47218 * 5.00271 * 13 12 11 37 37 H 0.97001 * 119.99807 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 -0.0006 5 6 4.8542 1.5396 -0.0013 6 6 5.7395 1.1742 1.1622 7 8 5.4116 0.2835 1.9175 8 7 6.8957 1.8370 1.3636 9 6 7.7192 1.4968 2.4453 10 6 7.4642 0.4916 3.3920 11 6 8.4935 0.4770 4.2691 12 7 9.3660 1.4381 3.8996 13 6 10.6207 1.7689 4.5797 14 6 11.7596 1.6971 3.5954 15 1 11.5680 1.4312 2.5664 16 6 13.0462 1.9709 4.0086 17 7 13.2794 2.2952 5.2617 18 14 14.4581 1.8811 2.7888 19 1 13.9346 1.4969 1.4533 20 1 15.1196 3.2076 2.6989 21 1 15.4424 0.8669 3.2447 22 7 8.8635 2.0619 2.7505 23 7 3.6334 -0.6524 -0.0066 24 7 2.3027 -1.0900 -0.0005 25 1 2.0055 -2.0133 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.9740 2.1211 0.0004 30 1 4.5483 2.5820 0.0882 31 1 5.4027 1.4007 -0.9329 32 1 7.1576 2.5495 0.7598 33 1 6.5995 -0.1549 3.4155 34 1 8.5964 -0.1833 5.1176 35 1 10.5573 2.7772 4.9889 36 1 10.7939 1.0588 5.3882 37 1 14.1845 2.4881 5.5524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119181038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:39 Heat of formation + Delta-G solvation = 90.845912 kcal Electronic energy + Delta-G solvation = -21359.835132 eV Core-core repulsion = 17946.682432 eV Total energy + Delta-G solvation = -3413.152700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31422 -42.03864 -40.38198 -36.20515 -35.24865 -34.34039 -32.87915 -32.35339 -30.96248 -29.85929 -28.37733 -27.78027 -25.09645 -23.37614 -22.11590 -21.48421 -21.04795 -20.40432 -18.69260 -18.32199 -18.21883 -17.75390 -17.01786 -16.59526 -16.17725 -15.78900 -15.60964 -15.10360 -14.61184 -14.45894 -14.42588 -14.23985 -13.90360 -13.81251 -13.66168 -13.48440 -13.13123 -12.91161 -12.77566 -12.71891 -12.30857 -12.02674 -11.60346 -11.44967 -11.36616 -10.84823 -10.72281 -10.24403 -9.74397 -9.46796 -9.10373 -8.33292 -6.47370 0.97130 0.98669 1.36489 1.37458 1.39205 1.49549 1.53148 1.85620 2.03605 2.26662 2.33041 2.51208 2.98262 3.54813 3.73258 3.92260 4.10266 4.21944 4.28050 4.48041 4.53636 4.76537 4.80341 4.82485 4.89635 4.91960 4.93440 5.03051 5.15308 5.19240 5.31091 5.56790 5.72802 5.80025 5.95646 6.26321 6.34189 6.50932 6.65060 6.80560 7.04207 7.20902 7.22597 8.74567 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.042881 B = 0.002619 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.815521 B =10689.716505 C =10940.684951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.086 3.914 3 C -0.281 4.281 4 C 0.072 3.928 5 C -0.045 4.045 6 C 0.519 3.481 7 O -0.541 6.541 8 N -0.624 5.624 9 C 0.268 3.732 10 C -0.295 4.295 11 C 0.054 3.946 12 N -0.345 5.345 13 C 0.272 3.728 14 C -0.546 4.546 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.921 5.921 18 Si 0.973 3.027 19 H -0.275 1.275 20 H -0.272 1.272 21 H -0.270 1.270 22 N -0.344 5.344 23 N -0.316 5.316 24 N -0.477 5.477 25 H 0.445 0.555 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.172 0.828 30 H 0.158 0.842 31 H 0.139 0.861 32 H 0.427 0.573 33 H 0.161 0.839 34 H 0.199 0.801 35 H 0.023 0.977 36 H 0.057 0.943 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.287 -1.797 -12.151 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C -0.310 4.310 4 C -0.095 4.095 5 C -0.086 4.086 6 C 0.307 3.693 7 O -0.416 6.416 8 N -0.275 5.275 9 C 0.013 3.987 10 C -0.327 4.327 11 C -0.094 4.094 12 N -0.127 5.127 13 C 0.154 3.846 14 C -0.584 4.584 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.560 5.560 18 Si 0.798 3.202 19 H -0.199 1.199 20 H -0.197 1.197 21 H -0.196 1.196 22 N -0.175 5.175 23 N -0.140 5.140 24 N -0.187 5.187 25 H 0.290 0.710 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.189 0.811 30 H 0.176 0.824 31 H 0.157 0.843 32 H 0.266 0.734 33 H 0.179 0.821 34 H 0.216 0.784 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.740 -2.502 -11.760 26.611 hybrid contribution 0.097 -0.177 -0.119 0.235 sum -23.643 -2.679 -11.879 26.595 Atomic orbital electron populations 1.20590 0.84255 1.05154 1.04708 1.21783 0.96360 0.87024 0.99172 1.21463 0.90533 1.00773 1.18253 1.21872 0.95866 0.91458 1.00315 1.20133 0.90397 1.01309 0.96754 1.21316 0.80132 0.80810 0.87085 1.90662 1.72465 1.30901 1.47550 1.42624 1.19729 1.38620 1.26522 1.19481 0.91220 0.96265 0.91746 1.21675 1.04252 1.07020 0.99708 1.23128 0.90344 0.94400 1.01564 1.48843 1.18353 1.25959 1.19532 1.19343 0.76684 0.96759 0.91862 1.21420 0.92136 1.48752 0.96116 0.93003 1.25765 1.01200 0.93915 0.97457 1.70007 1.22622 1.46531 1.16801 0.85273 0.78179 0.78321 0.78470 1.19939 1.19685 1.19561 1.77242 1.11323 1.24291 1.04652 1.77355 0.97790 1.13767 1.25040 1.46399 1.03527 1.09240 1.59545 0.70994 0.88509 0.89996 0.88338 0.81091 0.82421 0.84334 0.73440 0.82129 0.78437 0.95936 0.92500 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.43 71.24 0.74 0.20 16 2 C 0.09 1.32 7.21 41.40 0.30 1.62 16 3 C -0.28 -4.92 10.64 21.99 0.23 -4.68 16 4 C 0.07 1.63 6.01 43.10 0.26 1.89 16 5 C -0.04 -0.78 6.28 29.10 0.18 -0.60 16 6 C 0.52 14.74 7.79 87.66 0.68 15.43 16 7 O -0.54 -20.14 12.70 -3.08 -0.04 -20.18 16 8 N -0.62 -18.77 5.45 -307.50 -1.68 -20.44 16 9 C 0.27 11.00 8.11 133.33 1.08 12.08 16 10 C -0.30 -12.24 9.61 22.11 0.21 -12.02 16 11 C 0.05 2.25 11.44 83.52 0.96 3.21 16 12 N -0.34 -16.73 3.67 -351.85 -1.29 -18.02 16 13 C 0.27 14.44 6.26 85.63 0.54 14.98 16 14 C -0.55 -31.34 9.23 25.60 0.24 -31.10 16 15 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 16 C 0.02 0.94 5.46 84.65 0.46 1.41 16 17 N -0.92 -52.71 13.29 21.45 0.28 -52.43 16 18 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 22 N -0.34 -16.36 12.42 -54.45 -0.68 -17.04 16 23 N -0.32 -8.66 12.06 -47.38 -0.57 -9.24 16 24 N -0.48 -9.32 7.36 -48.00 -0.35 -9.67 16 25 H 0.44 6.09 8.96 -213.33 -1.91 4.18 16 26 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.16 1.43 8.12 -2.39 -0.02 1.41 16 31 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.43 9.68 8.82 -92.71 -0.82 8.87 16 33 H 0.16 6.62 5.91 -2.91 -0.02 6.60 16 34 H 0.20 6.59 8.06 -2.91 -0.02 6.57 16 35 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 37 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -81.06 329.09 1.98 -79.07 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -1.60 Total: 19.39 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.88 Total: 2.40 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -4.28 Total: -126.84 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.04 Total: -20.18 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -81.06 1.98 -79.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119181038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.920 kcal (2) G-P(sol) polarization free energy of solvation -81.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds