Wall clock time and date at job start Tue Mar 31 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.38817 * 59.78689 * 16 15 14 18 18 C 1.52639 * 109.38301 * 179.47078 * 16 15 14 19 19 S 1.81181 * 109.99284 * 187.00997 * 18 16 15 20 20 C 1.81176 * 103.30971 * 297.38377 * 19 18 16 21 21 C 1.52626 * 109.99488 * 62.61495 * 20 19 18 22 22 S 1.81176 * 109.99570 * 293.14815 * 21 20 19 23 23 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 24 24 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 25 25 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 28 28 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 29 29 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 31 31 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 33 33 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 34 34 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 35 35 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 36 36 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 37 37 H 1.09000 * 109.38415 * 307.16193 * 18 16 15 38 38 H 1.09003 * 109.38390 * 66.84810 * 18 16 15 39 39 H 1.09007 * 109.38640 * 302.45118 * 20 19 18 40 40 H 1.09002 * 109.37946 * 182.77845 * 20 19 18 41 41 H 1.09001 * 109.38800 * 172.98828 * 21 20 19 42 42 H 1.08999 * 109.38883 * 53.30876 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.4925 0.0531 4.8955 17 1 0.4027 0.0547 4.8754 18 6 1.9727 -0.6479 6.1635 19 16 1.1900 0.0974 7.6176 20 6 1.7944 1.8052 7.5873 21 6 1.3143 2.5062 6.3194 22 16 2.0968 1.7609 4.8652 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1299 -0.7209 -1.2496 30 1 1.6766 -1.7490 -1.2493 31 1 1.6670 -0.1929 -5.6868 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2494 34 1 1.8199 0.9435 2.4401 35 1 1.6588 -1.7222 3.6873 36 1 3.1119 -0.6941 3.6867 37 1 1.7109 -1.7048 6.1137 38 1 3.0551 -0.5482 6.2442 39 1 2.8842 1.8037 7.6094 40 1 1.4172 2.3379 8.4602 41 1 1.5760 3.5631 6.3691 42 1 0.2319 2.4066 6.2386 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131149845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:31 Heat of formation + Delta-G solvation = -20.124392 kcal Electronic energy + Delta-G solvation = -19113.919311 eV Core-core repulsion = 16345.398992 eV Total energy + Delta-G solvation = -2768.520319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -37.98514 -35.82412 -33.79268 -32.67118 -31.68928 -27.81490 -26.57669 -26.33107 -24.38006 -24.14295 -22.13196 -21.73083 -17.94619 -17.44054 -16.94411 -16.74974 -16.06058 -15.13851 -14.95654 -14.57255 -14.22914 -14.14170 -13.90719 -13.71478 -13.39043 -13.10792 -12.72241 -12.59053 -12.36527 -12.19725 -11.97906 -11.68448 -11.08089 -11.04140 -10.91302 -10.83275 -10.56701 -10.47878 -10.35585 -9.97425 -9.76926 -9.66851 -9.27564 -8.88634 -8.48044 -8.32493 -8.23037 -7.96232 -5.98261 -3.94249 1.14238 1.29394 1.95065 2.17724 3.33198 3.40795 3.44094 4.01567 4.19734 4.49698 4.50538 4.53555 4.63363 4.74651 4.87657 5.02689 5.10703 5.24469 5.28968 5.34804 5.45349 5.59613 5.61910 5.73425 5.90242 6.15247 6.26149 6.44463 6.63220 6.71388 6.82496 7.08707 7.14119 7.19979 7.27709 7.35275 7.47605 7.61886 7.87231 8.61928 9.07973 9.64898 11.14919 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038707 B = 0.003112 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.215658 B = 8995.337158 C = 9325.196645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.683 5.683 15 C 0.079 3.921 16 C -0.052 4.052 17 H 0.109 0.891 18 C -0.083 4.083 19 S -0.253 6.253 20 C -0.088 4.088 21 C -0.092 4.092 22 S -0.241 6.241 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.349 0.651 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 1.445 25.796 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.189 4.189 4 C -0.042 4.042 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.062 4.062 14 N -0.317 5.317 15 C -0.053 4.053 16 C -0.184 4.184 17 H 0.128 0.872 18 C -0.234 4.234 19 S -0.024 6.024 20 C -0.239 4.239 21 C -0.242 4.242 22 S -0.014 6.014 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.170 0.830 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.916 1.140 25.630 25.671 hybrid contribution 1.545 -0.602 -0.230 1.674 sum 2.461 0.538 25.400 25.524 Atomic orbital electron populations 1.21614 0.94488 1.00620 1.00771 1.20413 0.96239 0.95106 0.93114 1.21782 0.99585 0.96416 1.01070 1.19629 0.95799 0.95435 0.93331 1.21142 1.31365 1.13231 0.88671 0.90393 1.25019 0.95826 0.96741 0.96032 1.69914 1.46174 1.40666 0.97814 0.86846 0.81298 0.84061 0.77441 1.20454 1.21592 1.19207 1.22154 0.96347 0.98125 0.89543 1.60618 1.63515 1.07092 1.00515 1.21739 0.97387 0.98059 0.88120 1.23449 1.04702 0.93328 0.96871 0.87238 1.23614 1.03565 1.03096 0.93076 1.86842 1.66934 1.11048 1.37616 1.23548 1.04650 0.94650 1.01015 1.23539 1.04091 1.02959 0.93621 1.86946 1.65703 1.11304 1.37416 0.93633 0.92109 0.94258 0.94193 0.91134 0.94406 0.96966 0.97170 0.92911 0.91517 0.95833 0.82964 0.89566 0.94600 0.86433 0.88599 0.88613 0.86707 0.86619 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 2 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 3 C -0.13 -2.47 7.89 37.16 0.29 -2.18 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 5 C -0.51 -14.02 8.20 -34.44 -0.28 -14.31 16 6 H 0.08 2.31 5.92 -52.48 -0.31 2.00 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.89 13.96 55.43 0.77 -27.12 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.07 1.09 4.65 -3.82 -0.02 1.07 16 14 N -0.68 -9.49 5.70 -113.78 -0.65 -10.14 16 15 C 0.08 0.87 5.18 -3.82 -0.02 0.85 16 16 C -0.05 -0.50 2.65 -26.92 -0.07 -0.58 16 17 H 0.11 1.16 8.14 -51.92 -0.42 0.74 16 18 C -0.08 -0.67 5.53 36.97 0.20 -0.46 16 19 S -0.25 -2.16 22.05 -107.50 -2.37 -4.53 16 20 C -0.09 -0.59 6.25 36.97 0.23 -0.36 16 21 C -0.09 -0.68 6.25 36.97 0.23 -0.45 16 22 S -0.24 -2.46 20.03 -107.50 -2.15 -4.61 16 23 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 24 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 28 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 29 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 4.99 5.37 -39.29 -0.21 4.78 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.83 8.13 -51.92 -0.42 0.41 16 38 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.10 0.63 8.14 -51.91 -0.42 0.21 16 40 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.12 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -29.82 341.44 -10.71 -40.52 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.37 Total: 1.38 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 0.59 Total: -17.82 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.12 Total: -37.25 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -4.52 Total: -9.14 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.82 -10.71 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131149845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.399 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds