Wall clock time and date at job start Tue Mar 31 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.38817 * 59.78689 * 16 15 14 18 18 C 1.52639 * 109.38301 * 179.47078 * 16 15 14 19 19 S 1.81181 * 109.99284 * 187.00997 * 18 16 15 20 20 C 1.81176 * 103.30971 * 297.38377 * 19 18 16 21 21 C 1.52626 * 109.99488 * 62.61495 * 20 19 18 22 22 S 1.81176 * 109.99570 * 293.14815 * 21 20 19 23 23 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 24 24 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 25 25 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 28 28 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 29 29 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 31 31 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 33 33 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 34 34 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 35 35 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 36 36 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 37 37 H 1.09000 * 109.38415 * 307.16193 * 18 16 15 38 38 H 1.09003 * 109.38390 * 66.84810 * 18 16 15 39 39 H 1.09007 * 109.38640 * 302.45118 * 20 19 18 40 40 H 1.09002 * 109.37946 * 182.77845 * 20 19 18 41 41 H 1.09001 * 109.38800 * 172.98828 * 21 20 19 42 42 H 1.08999 * 109.38883 * 53.30876 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.4925 0.0531 4.8955 17 1 0.4027 0.0547 4.8754 18 6 1.9727 -0.6479 6.1635 19 16 1.1900 0.0974 7.6176 20 6 1.7944 1.8052 7.5873 21 6 1.3143 2.5062 6.3194 22 16 2.0968 1.7609 4.8652 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1299 -0.7209 -1.2496 30 1 1.6766 -1.7490 -1.2493 31 1 1.6670 -0.1929 -5.6868 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2494 34 1 1.8199 0.9435 2.4401 35 1 1.6588 -1.7222 3.6873 36 1 3.1119 -0.6941 3.6867 37 1 1.7109 -1.7048 6.1137 38 1 3.0551 -0.5482 6.2442 39 1 2.8842 1.8037 7.6094 40 1 1.4172 2.3379 8.4602 41 1 1.5760 3.5631 6.3691 42 1 0.2319 2.4066 6.2386 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131149845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:31 Heat of formation + Delta-G solvation = -37.041173 kcal Electronic energy + Delta-G solvation = -19114.652877 eV Core-core repulsion = 16345.398992 eV Total energy + Delta-G solvation = -2769.253886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.35720 -36.94823 -34.77770 -34.18850 -32.95193 -29.68793 -27.93264 -27.70237 -25.64111 -24.82788 -23.53831 -22.84668 -19.47855 -18.86204 -18.20502 -17.70765 -16.87635 -16.43105 -15.95106 -15.87995 -15.57434 -15.10584 -14.88975 -14.71065 -14.61181 -14.27480 -14.11819 -13.91158 -13.57089 -13.43287 -13.14493 -12.83182 -12.73683 -12.62146 -12.32236 -12.24502 -12.07123 -11.75807 -11.66165 -11.36513 -11.25960 -10.98269 -10.84742 -10.69301 -10.60226 -9.32299 -9.01262 -8.70351 -8.20981 -6.21336 0.50768 0.65213 1.33371 1.36504 1.38015 1.49095 1.52352 2.40232 3.12255 3.14046 3.63204 3.72039 3.87845 3.99045 4.01931 4.11086 4.18839 4.28612 4.33289 4.35733 4.58544 4.61413 4.66882 4.73895 4.75012 4.78277 4.87593 4.93010 5.03841 5.09193 5.18861 5.36490 5.45474 5.52693 5.62134 5.75352 5.81899 6.06869 6.42180 6.47441 6.86107 7.41078 8.95386 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038707 B = 0.003112 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.215658 B = 8995.337158 C = 9325.196645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.049 4.049 3 C -0.123 4.123 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.043 0.957 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.249 1.249 13 C 0.079 3.921 14 N -0.686 5.686 15 C 0.080 3.920 16 C -0.038 4.038 17 H 0.099 0.901 18 C -0.074 4.074 19 S -0.280 6.280 20 C -0.079 4.079 21 C -0.080 4.080 22 S -0.285 6.285 23 H 0.064 0.936 24 H 0.027 0.973 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.013 0.987 30 H 0.014 0.986 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.346 0.654 35 H 0.098 0.902 36 H 0.039 0.961 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 0.364 28.367 28.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.049 4.049 3 C -0.181 4.181 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.062 0.938 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.172 1.172 13 C -0.050 4.050 14 N -0.320 5.320 15 C -0.051 4.051 16 C -0.169 4.169 17 H 0.117 0.883 18 C -0.225 4.225 19 S -0.052 6.052 20 C -0.229 4.229 21 C -0.230 4.230 22 S -0.058 6.058 23 H 0.083 0.917 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.168 0.832 35 H 0.116 0.884 36 H 0.057 0.943 37 H 0.147 0.853 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.852 0.056 28.234 28.295 hybrid contribution 1.181 -0.146 -0.972 1.537 sum 3.033 -0.090 27.262 27.430 Atomic orbital electron populations 1.21501 0.94562 1.00459 1.00006 1.20354 0.96135 0.95244 0.93200 1.21679 0.99648 0.96155 1.00589 1.19590 0.95606 0.95455 0.93352 1.21436 1.30050 1.12156 0.90530 0.93841 1.25938 0.97624 1.00272 0.95733 1.70072 1.48332 1.42906 0.98453 0.85779 0.79681 0.79972 0.77913 1.19520 1.21520 1.17245 1.21889 0.96316 0.97954 0.88843 1.60563 1.63676 1.06989 1.00751 1.21799 0.97629 0.98511 0.87210 1.23292 1.03838 0.92806 0.96981 0.88252 1.23545 1.03590 1.03439 0.91914 1.86962 1.67465 1.12892 1.37891 1.23570 1.04817 0.93215 1.01312 1.23566 1.03557 1.03553 0.92287 1.87066 1.66435 1.12487 1.39791 0.91723 0.95409 0.94067 0.93907 0.94448 0.91991 0.96918 0.96791 0.92909 0.90927 0.95601 0.83228 0.88424 0.94287 0.85328 0.88230 0.88263 0.84730 0.85008 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 2 C -0.05 -1.85 0.60 -52.18 -0.03 -1.89 16 3 C -0.12 -4.61 7.89 71.98 0.57 -4.04 16 4 C 0.00 -0.10 3.11 29.85 0.09 -0.01 16 5 C -0.50 -28.53 8.20 25.60 0.21 -28.32 16 6 H 0.04 2.71 5.92 -2.91 -0.02 2.69 16 7 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 8 N -0.96 -60.57 13.96 21.45 0.30 -60.27 16 9 Si 0.94 44.85 27.47 68.60 1.88 46.74 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 C 0.08 2.39 4.65 86.30 0.40 2.79 16 14 N -0.69 -17.46 5.70 -513.88 -2.93 -20.40 16 15 C 0.08 1.56 5.18 86.30 0.45 2.01 16 16 C -0.04 -0.65 2.65 30.47 0.08 -0.57 16 17 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 18 C -0.07 -1.03 5.53 71.86 0.40 -0.63 16 19 S -0.28 -4.22 22.05 -56.49 -1.25 -5.46 16 20 C -0.08 -0.86 6.25 71.86 0.45 -0.41 16 21 C -0.08 -1.00 6.25 71.86 0.45 -0.55 16 22 S -0.29 -5.29 20.03 -56.49 -1.13 -6.42 16 23 H 0.06 2.19 7.60 -2.39 -0.02 2.17 16 24 H 0.03 1.21 6.62 -2.39 -0.02 1.20 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.04 1.62 6.62 -2.38 -0.02 1.60 16 28 H 0.06 1.99 6.57 -2.39 -0.02 1.97 16 29 H 0.01 0.58 7.20 -2.39 -0.02 0.57 16 30 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 31 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.35 9.19 5.37 -89.69 -0.48 8.71 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.13 1.49 8.13 -2.39 -0.02 1.47 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -65.14 341.44 1.42 -63.72 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.44 Total: 16.79 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 4.11 Total: -34.70 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -2.63 Total: -80.67 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Atomic # 16 Polarization: -9.50 SS G_CDS: -2.38 Total: -11.88 kcal Total: -65.14 1.42 -63.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131149845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.675 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds