Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81399 * 102.99910 * 2 1 4 4 H 1.09002 * 109.54776 * 305.18293 * 3 2 1 5 5 C 1.50761 * 109.61952 * 65.40752 * 3 2 1 6 6 C 1.54120 * 112.64255 * 212.86463 * 5 3 2 7 7 C 1.53818 * 112.00323 * 318.59483 * 6 5 3 8 8 C 1.50817 * 111.56579 * 318.93934 * 7 6 5 9 9 N 1.47631 * 108.03825 * 95.09102 * 8 7 6 10 10 C 1.46902 * 110.99790 * 150.33040 * 9 8 7 11 11 C 1.53002 * 109.47262 * 66.04714 * 10 9 8 12 12 C 1.52993 * 109.47069 * 179.97438 * 11 10 9 13 13 S 1.81007 * 109.46880 * 180.02562 * 12 11 10 14 14 C 1.76199 * 99.99936 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00325 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00348 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99431 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00317 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47259 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47051 * 120.00031 * 18 16 14 21 21 H 1.48507 * 109.47160 * 239.99808 * 18 16 14 22 22 C 1.39778 * 114.77260 * 277.19032 * 9 8 7 23 23 H 1.08997 * 109.46849 * 59.99607 * 1 2 3 24 24 H 1.08991 * 109.46895 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46987 * 300.00018 * 1 2 3 26 26 H 1.08995 * 108.85360 * 333.72432 * 5 3 2 27 27 H 1.08999 * 108.85433 * 92.21724 * 5 3 2 28 28 H 1.09001 * 109.01622 * 197.91313 * 6 5 3 29 29 H 1.08997 * 108.91373 * 79.21102 * 6 5 3 30 30 H 1.09002 * 109.05153 * 198.42245 * 7 6 5 31 31 H 1.09000 * 109.04747 * 79.45213 * 7 6 5 32 32 H 1.08994 * 109.74689 * 214.73036 * 8 7 6 33 33 H 1.09001 * 109.74559 * 335.46328 * 8 7 6 34 34 H 1.09004 * 109.46919 * 186.05084 * 10 9 8 35 35 H 1.09001 * 109.47059 * 306.05077 * 10 9 8 36 36 H 1.08993 * 109.47053 * 300.00685 * 11 10 9 37 37 H 1.09005 * 109.46563 * 59.99759 * 11 10 9 38 38 H 1.08998 * 109.47457 * 300.00050 * 12 11 10 39 39 H 1.09001 * 109.46855 * 60.00606 * 12 11 10 40 40 H 0.97002 * 120.00125 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.02439 * 182.86557 * 22 9 8 42 42 H 1.09003 * 109.01969 * 301.69053 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7275 2.2560 -0.8395 5 6 1.7601 2.3937 1.2913 6 6 1.3103 3.8570 1.1134 7 6 2.2470 4.6381 0.1762 8 6 3.6945 4.3001 0.4315 9 7 4.0915 3.2425 -0.5189 10 6 5.5211 3.3363 -0.8437 11 6 6.3492 3.0318 0.4063 12 6 7.8380 3.1288 0.0679 13 16 8.8176 2.7678 1.5466 14 6 10.4423 2.9466 0.8885 15 1 10.5783 3.2071 -0.1508 16 6 11.5473 2.7516 1.7054 17 7 11.3815 2.4336 2.9719 18 14 13.2697 2.9404 1.0075 19 1 13.1844 3.2987 -0.4311 20 1 13.9872 4.0123 1.7434 21 1 14.0069 1.6597 1.1553 22 6 3.7510 1.9448 -0.1269 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.9258 1.8136 1.6853 27 1 2.5793 2.3645 2.0097 28 1 1.2962 4.3451 2.0879 29 1 0.3026 3.8688 0.6980 30 1 2.0980 5.7063 0.3336 31 1 2.0014 4.3932 -0.8571 32 1 4.3120 5.1849 0.2771 33 1 3.8140 3.9405 1.4535 34 1 5.7642 2.6160 -1.6249 35 1 5.7489 4.3430 -1.1940 36 1 6.1060 3.7519 1.1875 37 1 6.1213 2.0250 0.7567 38 1 8.0809 2.4083 -0.7131 39 1 8.0661 4.1354 -0.2826 40 1 12.1538 2.2969 3.5427 41 1 4.1302 1.2393 -0.8661 42 1 4.2145 1.7315 0.8363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134582359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -18.356289 kcal Electronic energy + Delta-G solvation = -18915.632268 eV Core-core repulsion = 16147.188620 eV Total energy + Delta-G solvation = -2768.443648 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79654 -35.62213 -32.47028 -32.41778 -32.09592 -29.17732 -27.25320 -25.62449 -25.39843 -24.22826 -22.17312 -20.21580 -19.66153 -17.48379 -16.99546 -15.88706 -15.67613 -15.08386 -14.88163 -14.80005 -14.49812 -14.45603 -13.92751 -13.86041 -13.54096 -13.12651 -12.77353 -12.56860 -12.40698 -12.06661 -11.88649 -11.58353 -11.51684 -11.13679 -11.05867 -10.99352 -10.73951 -10.71339 -10.66883 -10.52554 -10.27180 -9.95490 -9.66998 -9.06174 -8.34960 -8.09433 -7.85611 -6.52749 -6.22391 -3.92679 1.45323 2.38527 3.21329 3.22949 3.30504 3.58364 3.94064 4.22851 4.41064 4.51468 4.77159 4.84905 4.87067 4.90605 4.98219 5.13595 5.16744 5.22269 5.24290 5.32896 5.42039 5.51231 5.53744 5.56684 5.67301 5.70916 5.73637 5.80142 5.85191 5.91845 5.95988 6.07462 6.10432 6.20978 6.33749 6.51987 6.71672 7.08374 7.34539 7.61414 8.37501 9.24077 10.85903 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003006 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.570522 B = 9313.899966 C = 9762.426411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.258 6.258 3 C -0.047 4.047 4 H 0.097 0.903 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.119 4.119 8 C 0.060 3.940 9 N -0.550 5.550 10 C 0.065 3.935 11 C -0.134 4.134 12 C -0.109 4.109 13 S -0.138 6.138 14 C -0.514 4.514 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.092 3.908 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.266 0.734 41 H 0.080 0.920 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.918 1.077 -6.015 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.030 6.030 3 C -0.176 4.176 4 H 0.115 0.885 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.067 4.067 9 N -0.274 5.274 10 C -0.063 4.063 11 C -0.174 4.174 12 C -0.258 4.258 13 S 0.090 5.910 14 C -0.662 4.662 15 H 0.091 0.909 16 C -0.139 4.139 17 N -0.506 5.506 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.039 4.039 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.753 -0.069 -5.195 23.338 hybrid contribution 1.097 1.215 -0.835 1.838 sum -21.656 1.146 -6.030 22.509 Atomic orbital electron populations 1.23398 0.94554 1.06248 1.04784 1.86951 1.06822 1.11355 1.97891 1.23063 1.00411 0.92689 1.01412 0.88493 1.21795 1.01764 0.95766 0.96525 1.21926 0.98855 0.94532 1.00080 1.21441 0.94413 0.99312 1.00529 1.21846 0.95998 0.94503 0.94326 1.59078 1.17724 1.03988 1.46570 1.22290 0.84213 1.02618 0.97213 1.21938 0.94555 1.02416 0.98474 1.23174 0.96715 1.02815 1.03088 1.84642 1.01988 1.91654 1.12681 1.22725 0.90303 1.54540 0.98680 0.90908 1.25025 0.99461 0.94649 0.94740 1.70036 1.30866 1.44796 1.04866 0.86111 0.82369 0.77964 0.79069 1.19585 1.20579 1.20566 1.20641 0.91497 0.90989 1.00730 0.90637 0.88199 0.90567 0.91841 0.91036 0.91860 0.92458 0.91816 0.90772 0.90528 0.93478 0.90683 0.90488 0.91658 0.91544 0.92115 0.92139 0.92385 0.90202 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.48 101.05 1.06 0.18 16 2 S -0.26 -2.77 21.57 -107.50 -2.32 -5.08 16 3 C -0.05 -0.48 2.37 -27.10 -0.06 -0.54 16 4 H 0.10 0.99 7.11 -51.92 -0.37 0.62 16 5 C -0.12 -1.11 4.84 -27.27 -0.13 -1.24 16 6 C -0.11 -0.93 5.91 -25.72 -0.15 -1.08 16 7 C -0.12 -1.05 5.41 -27.40 -0.15 -1.19 16 8 C 0.06 0.64 4.31 -4.52 -0.02 0.62 16 9 N -0.55 -6.45 4.11 -240.00 -0.99 -7.44 16 10 C 0.07 0.85 5.15 -3.82 -0.02 0.83 16 11 C -0.13 -2.16 4.68 -26.73 -0.13 -2.29 16 12 C -0.11 -2.19 5.67 37.15 0.21 -1.98 16 13 S -0.14 -3.65 21.44 -107.50 -2.30 -5.95 16 14 C -0.51 -14.89 9.50 30.94 0.29 -14.60 16 15 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 16 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 17 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 18 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.09 1.10 3.82 -6.74 -0.03 1.08 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.50 6.88 -51.92 -0.36 0.14 16 26 H 0.06 0.55 6.18 -51.93 -0.32 0.23 16 27 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.70 7.26 -51.93 -0.38 0.32 16 32 H 0.08 0.82 7.67 -51.93 -0.40 0.42 16 33 H 0.05 0.55 6.55 -51.93 -0.34 0.21 16 34 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 35 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 36 H 0.06 1.07 7.31 -51.93 -0.38 0.70 16 37 H 0.07 1.13 6.66 -51.93 -0.35 0.78 16 38 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 39 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 1.02 7.76 -51.93 -0.40 0.62 16 42 H 0.04 0.52 6.08 -51.93 -0.32 0.20 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -30.73 343.88 -11.21 -41.95 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.28 Total: -1.55 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 0.78 Total: -18.29 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: -0.25 Total: -32.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -4.62 Total: -11.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.73 -11.21 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134582359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.591 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds