Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81399 * 102.99910 * 2 1 4 4 H 1.09002 * 109.54776 * 305.18293 * 3 2 1 5 5 C 1.50761 * 109.61952 * 65.40752 * 3 2 1 6 6 C 1.54120 * 112.64255 * 212.86463 * 5 3 2 7 7 C 1.53818 * 112.00323 * 318.59483 * 6 5 3 8 8 C 1.50817 * 111.56579 * 318.93934 * 7 6 5 9 9 N 1.47631 * 108.03825 * 95.09102 * 8 7 6 10 10 C 1.46902 * 110.99790 * 150.33040 * 9 8 7 11 11 C 1.53002 * 109.47262 * 66.04714 * 10 9 8 12 12 C 1.52993 * 109.47069 * 179.97438 * 11 10 9 13 13 S 1.81007 * 109.46880 * 180.02562 * 12 11 10 14 14 C 1.76199 * 99.99936 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00325 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00348 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99431 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00317 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47259 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47051 * 120.00031 * 18 16 14 21 21 H 1.48507 * 109.47160 * 239.99808 * 18 16 14 22 22 C 1.39778 * 114.77260 * 277.19032 * 9 8 7 23 23 H 1.08997 * 109.46849 * 59.99607 * 1 2 3 24 24 H 1.08991 * 109.46895 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46987 * 300.00018 * 1 2 3 26 26 H 1.08995 * 108.85360 * 333.72432 * 5 3 2 27 27 H 1.08999 * 108.85433 * 92.21724 * 5 3 2 28 28 H 1.09001 * 109.01622 * 197.91313 * 6 5 3 29 29 H 1.08997 * 108.91373 * 79.21102 * 6 5 3 30 30 H 1.09002 * 109.05153 * 198.42245 * 7 6 5 31 31 H 1.09000 * 109.04747 * 79.45213 * 7 6 5 32 32 H 1.08994 * 109.74689 * 214.73036 * 8 7 6 33 33 H 1.09001 * 109.74559 * 335.46328 * 8 7 6 34 34 H 1.09004 * 109.46919 * 186.05084 * 10 9 8 35 35 H 1.09001 * 109.47059 * 306.05077 * 10 9 8 36 36 H 1.08993 * 109.47053 * 300.00685 * 11 10 9 37 37 H 1.09005 * 109.46563 * 59.99759 * 11 10 9 38 38 H 1.08998 * 109.47457 * 300.00050 * 12 11 10 39 39 H 1.09001 * 109.46855 * 60.00606 * 12 11 10 40 40 H 0.97002 * 120.00125 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.02439 * 182.86557 * 22 9 8 42 42 H 1.09003 * 109.01969 * 301.69053 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7275 2.2560 -0.8395 5 6 1.7601 2.3937 1.2913 6 6 1.3103 3.8570 1.1134 7 6 2.2470 4.6381 0.1762 8 6 3.6945 4.3001 0.4315 9 7 4.0915 3.2425 -0.5189 10 6 5.5211 3.3363 -0.8437 11 6 6.3492 3.0318 0.4063 12 6 7.8380 3.1288 0.0679 13 16 8.8176 2.7678 1.5466 14 6 10.4423 2.9466 0.8885 15 1 10.5783 3.2071 -0.1508 16 6 11.5473 2.7516 1.7054 17 7 11.3815 2.4336 2.9719 18 14 13.2697 2.9404 1.0075 19 1 13.1844 3.2987 -0.4311 20 1 13.9872 4.0123 1.7434 21 1 14.0069 1.6597 1.1553 22 6 3.7510 1.9448 -0.1269 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.9258 1.8136 1.6853 27 1 2.5793 2.3645 2.0097 28 1 1.2962 4.3451 2.0879 29 1 0.3026 3.8688 0.6980 30 1 2.0980 5.7063 0.3336 31 1 2.0014 4.3932 -0.8571 32 1 4.3120 5.1849 0.2771 33 1 3.8140 3.9405 1.4535 34 1 5.7642 2.6160 -1.6249 35 1 5.7489 4.3430 -1.1940 36 1 6.1060 3.7519 1.1875 37 1 6.1213 2.0250 0.7567 38 1 8.0809 2.4083 -0.7131 39 1 8.0661 4.1354 -0.2826 40 1 12.1538 2.2969 3.5427 41 1 4.1302 1.2393 -0.8661 42 1 4.2145 1.7315 0.8363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134582359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -35.488069 kcal Electronic energy + Delta-G solvation = -18916.375158 eV Core-core repulsion = 16147.188620 eV Total energy + Delta-G solvation = -2769.186538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73665 -36.60219 -34.62802 -33.45931 -33.18487 -29.78245 -28.37296 -27.71372 -26.24779 -25.36251 -23.40119 -21.25043 -20.45730 -19.57884 -17.91025 -16.91643 -16.87962 -16.63465 -16.25658 -15.94359 -15.73318 -15.55803 -15.07631 -14.75708 -14.53278 -14.23394 -13.86751 -13.52863 -13.43216 -13.34815 -13.10843 -13.05726 -12.92894 -12.65198 -12.54675 -12.34216 -11.97239 -11.81638 -11.66837 -11.54172 -11.34816 -11.26784 -11.16827 -10.72677 -10.36918 -9.19610 -8.70156 -8.69789 -8.39152 -6.16090 0.69362 1.30410 1.37263 1.48555 1.66851 1.73877 2.26691 2.95119 2.95791 3.29715 3.55596 3.70658 3.92020 4.03206 4.09640 4.11650 4.21246 4.29711 4.32632 4.36245 4.42474 4.43031 4.49031 4.64838 4.73695 4.74193 4.80359 4.85845 4.90085 4.93669 4.98091 5.07804 5.16782 5.23813 5.27005 5.34478 5.38212 5.47692 6.08324 6.16669 6.35089 7.03024 8.70558 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003006 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.570522 B = 9313.899966 C = 9762.426411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.316 6.316 3 C -0.029 4.029 4 H 0.103 0.897 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.114 4.114 8 C 0.057 3.943 9 N -0.542 5.542 10 C 0.075 3.925 11 C -0.119 4.119 12 C -0.083 4.083 13 S -0.207 6.207 14 C -0.535 4.535 15 H 0.073 0.927 16 C 0.013 3.987 17 N -0.908 5.908 18 Si 0.996 3.004 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.272 1.272 22 C 0.095 3.905 23 H 0.087 0.913 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.271 0.729 41 H 0.069 0.931 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.111 2.022 -7.379 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.090 6.090 3 C -0.158 4.158 4 H 0.121 0.879 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.070 4.070 9 N -0.265 5.265 10 C -0.055 4.055 11 C -0.159 4.159 12 C -0.233 4.233 13 S 0.021 5.979 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.191 4.191 17 N -0.545 5.545 18 Si 0.818 3.182 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.036 4.036 23 H 0.106 0.894 24 H 0.129 0.871 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -23.969 0.880 -6.559 24.865 hybrid contribution 1.364 0.896 -0.408 1.683 sum -22.605 1.776 -6.967 23.720 Atomic orbital electron populations 1.23443 0.90697 1.07357 1.05893 1.87170 1.11155 1.12588 1.98038 1.22895 0.98751 0.92047 1.02080 0.87908 1.21765 1.01355 0.96948 0.95477 1.21909 0.99422 0.93239 1.00376 1.21395 0.92868 1.00346 1.00566 1.21948 0.97651 0.93987 0.93380 1.59186 1.16396 1.04094 1.46811 1.22208 0.84512 1.03407 0.95358 1.21845 0.92301 1.01667 1.00128 1.23113 0.97681 1.02922 0.99550 1.84687 1.03199 1.92181 1.17821 1.23059 0.91399 1.54965 0.98893 0.90856 1.26104 1.04197 0.93846 0.94997 1.70170 1.32425 1.45549 1.06359 0.84942 0.76299 0.78318 0.78668 1.18541 1.19578 1.19719 1.20595 0.93002 0.90889 0.99142 0.89418 0.87106 0.89477 0.90945 0.92976 0.91348 0.90738 0.90317 0.90878 0.90289 0.94696 0.90328 0.89161 0.92037 0.92795 0.91976 0.91483 0.91980 0.91237 0.96583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.48 113.37 1.19 -0.12 16 2 S -0.32 -6.65 21.57 -56.49 -1.22 -7.87 16 3 C -0.03 -0.56 2.37 30.35 0.07 -0.49 16 4 H 0.10 1.91 7.11 -2.39 -0.02 1.89 16 5 C -0.12 -2.03 4.84 30.25 0.15 -1.88 16 6 C -0.11 -1.53 5.91 31.25 0.18 -1.34 16 7 C -0.11 -1.74 5.41 30.16 0.16 -1.58 16 8 C 0.06 1.15 4.31 85.45 0.37 1.52 16 9 N -0.54 -12.22 4.11 -913.22 -3.76 -15.97 16 10 C 0.07 1.87 5.15 86.30 0.44 2.31 16 11 C -0.12 -3.87 4.68 30.59 0.14 -3.73 16 12 C -0.08 -3.37 5.67 71.98 0.41 -2.96 16 13 S -0.21 -11.30 21.44 -56.49 -1.21 -12.51 16 14 C -0.54 -31.42 9.50 67.95 0.65 -30.77 16 15 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 16 C 0.01 0.76 5.49 84.86 0.47 1.23 16 17 N -0.91 -55.69 13.22 21.65 0.29 -55.40 16 18 Si 1.00 44.46 29.55 68.60 2.03 46.49 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.09 2.27 3.82 88.07 0.34 2.61 16 23 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.09 0.91 6.88 -2.39 -0.02 0.89 16 26 H 0.07 1.14 6.18 -2.39 -0.01 1.12 16 27 H 0.05 1.12 6.57 -2.39 -0.02 1.10 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.17 7.26 -2.39 -0.02 1.15 16 32 H 0.08 1.57 7.67 -2.39 -0.02 1.55 16 33 H 0.03 0.80 6.55 -2.39 -0.02 0.78 16 34 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 35 H 0.09 2.07 7.91 -2.39 -0.02 2.05 16 36 H 0.06 2.04 7.31 -2.39 -0.02 2.03 16 37 H 0.05 1.89 6.66 -2.38 -0.02 1.88 16 38 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.07 1.81 7.76 -2.39 -0.02 1.79 16 42 H 0.02 0.46 6.08 -2.39 -0.01 0.44 16 Total: -1.00 -67.38 343.88 1.67 -65.71 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.97 Total: 14.76 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 4.57 Total: -35.20 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -3.47 Total: -71.38 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -17.95 SS G_CDS: -2.43 Total: -20.38 kcal Total: -67.38 1.67 -65.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134582359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.224 kcal (2) G-P(sol) polarization free energy of solvation -67.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds