Wall clock time and date at job start Tue Mar 31 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34947 * 126.03651 * 2 1 4 4 C 1.35316 * 107.74509 * 180.15014 * 3 2 1 5 5 C 1.50700 * 126.03835 * 179.87618 * 4 3 2 6 6 C 1.53004 * 109.47208 * 269.71378 * 5 4 3 7 7 C 1.50700 * 109.47208 * 180.02562 * 6 5 4 8 8 O 1.21303 * 119.99816 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.40595 * 119.99527 * 179.72943 * 9 7 6 11 11 C 1.40649 * 126.08553 * 359.68015 * 10 9 7 12 12 N 1.30903 * 108.38945 * 179.87998 * 11 10 9 13 13 N 1.40074 * 108.40705 * 0.38914 * 12 11 10 14 14 C 1.37320 * 126.07077 * 179.73305 * 13 12 11 15 15 H 1.07999 * 120.00028 * 180.02562 * 14 13 12 16 16 C 1.38983 * 120.00055 * 0.02562 * 14 13 12 17 17 N 1.31296 * 119.99923 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00025 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47382 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46738 * 120.00166 * 18 16 14 21 21 H 1.48494 * 109.47440 * 239.99960 * 18 16 14 22 22 C 1.35679 * 126.07814 * 179.97438 * 10 9 7 23 23 C 1.39864 * 107.92112 * 359.61228 * 4 3 2 24 24 N 1.30842 * 108.20475 * 0.24224 * 23 4 3 25 25 H 1.09004 * 109.47010 * 270.25710 * 1 2 3 26 26 H 1.09001 * 109.47398 * 30.25799 * 1 2 3 27 27 H 1.09004 * 109.47121 * 150.25552 * 1 2 3 28 28 H 1.08001 * 126.12463 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.47322 * 149.71795 * 5 4 3 30 30 H 1.08998 * 109.47585 * 29.71377 * 5 4 3 31 31 H 1.09009 * 109.46730 * 59.99906 * 6 5 4 32 32 H 1.08998 * 109.46846 * 300.00451 * 6 5 4 33 33 H 0.97001 * 120.00485 * 359.71840 * 9 7 6 34 34 H 1.07999 * 125.80209 * 0.02562 * 11 10 9 35 35 H 0.97004 * 120.00252 * 179.97438 * 17 16 14 36 36 H 1.07996 * 126.24944 * 359.92772 * 22 10 9 37 37 H 1.07994 * 125.90153 * 180.26206 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7679 1.5453 -0.0073 6 6 5.1824 1.8361 -1.4511 7 6 6.4071 2.7144 -1.4549 8 8 6.8996 3.0729 -0.4060 9 7 6.9514 3.1065 -2.6239 10 6 8.0905 3.9305 -2.6275 11 6 8.7596 4.4239 -1.4930 12 7 9.7723 5.1500 -1.8940 13 7 9.7848 5.1564 -3.2947 14 6 10.6906 5.8114 -4.0922 15 1 10.6075 5.7496 -5.1672 16 6 11.7145 6.5539 -3.5160 17 7 11.8159 6.6285 -2.2091 18 14 12.9472 7.4443 -4.6008 19 1 12.6160 7.2025 -6.0281 20 1 12.8915 8.9015 -4.3202 21 1 14.3137 6.9374 -4.3166 22 6 8.7366 4.3958 -3.7261 23 6 3.5347 -0.7320 0.0035 24 7 2.2891 -1.1328 0.0055 25 1 -0.3633 0.0046 1.0277 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 1.9280 2.1193 0.0004 29 1 5.5820 1.0366 0.5089 30 1 4.5441 2.4825 0.5023 31 1 4.3683 2.3449 -1.9673 32 1 5.4062 0.8989 -1.9606 33 1 6.5573 2.8201 -3.4627 34 1 8.4859 4.2339 -0.4657 35 1 12.5307 7.1464 -1.8068 36 1 8.4705 4.1999 -4.7543 37 1 4.4053 -1.3709 0.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139314265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:46 Heat of formation + Delta-G solvation = 122.634290 kcal Electronic energy + Delta-G solvation = -21225.412503 eV Core-core repulsion = 17813.638251 eV Total energy + Delta-G solvation = -3411.774253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35464 -39.82992 -38.53851 -34.50728 -34.03597 -33.09588 -32.65281 -30.24776 -29.62712 -27.87496 -26.86591 -24.93730 -23.70450 -21.26220 -20.98073 -20.38698 -19.80926 -19.32749 -17.51540 -16.95933 -16.25112 -15.62331 -15.41076 -15.29373 -15.14042 -14.58365 -14.06516 -13.76527 -13.52923 -13.28884 -13.08422 -12.95306 -12.85782 -12.56725 -12.18534 -11.88098 -11.63919 -11.35989 -11.25838 -11.08375 -10.89319 -10.57182 -10.48763 -10.08357 -9.60124 -9.12409 -9.10962 -8.75871 -8.47588 -8.00999 -6.63639 -6.52182 -4.18641 1.70193 2.32603 2.63711 2.89959 3.07067 3.09669 3.12928 3.71772 3.73427 3.94688 4.29153 4.48424 4.66119 4.79747 4.80240 4.92674 5.05400 5.05608 5.12511 5.19150 5.29757 5.51160 5.58653 5.75067 5.79799 6.23837 6.28111 6.29528 6.51783 6.52728 6.81716 6.96284 7.02349 7.19772 7.30733 7.51708 7.90642 8.25925 8.36319 8.69337 8.96345 9.42814 9.72317 10.44015 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.064145 B = 0.002359 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.403885 B =11865.691601 C =12008.430524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.054 3.946 4 C -0.230 4.230 5 C -0.024 4.024 6 C -0.128 4.128 7 C 0.496 3.504 8 O -0.538 6.538 9 N -0.628 5.628 10 C -0.058 4.058 11 C -0.034 4.034 12 N -0.261 5.261 13 N -0.145 5.145 14 C -0.323 4.323 15 H 0.116 0.884 16 C 0.045 3.955 17 N -0.771 5.771 18 Si 0.934 3.066 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.085 4.085 23 C 0.053 3.947 24 N -0.302 5.302 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.173 0.827 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.396 0.604 34 H 0.176 0.824 35 H 0.274 0.726 36 H 0.144 0.856 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.548 -9.867 0.038 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.164 5.164 3 C -0.092 4.092 4 C -0.241 4.241 5 C -0.063 4.063 6 C -0.169 4.169 7 C 0.282 3.718 8 O -0.416 6.416 9 N -0.271 5.271 10 C -0.164 4.164 11 C -0.210 4.210 12 N -0.092 5.092 13 N 0.087 4.913 14 C -0.455 4.455 15 H 0.133 0.867 16 C -0.172 4.172 17 N -0.398 5.398 18 Si 0.758 3.242 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.199 1.199 22 C -0.236 4.236 23 C -0.133 4.133 24 N -0.124 5.124 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.190 0.810 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.229 0.771 34 H 0.193 0.807 35 H 0.084 0.916 36 H 0.162 0.838 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.031 -9.798 1.340 20.565 hybrid contribution 0.044 0.433 -1.343 1.412 sum -17.987 -9.364 -0.003 20.279 Atomic orbital electron populations 1.21824 0.74429 1.04385 1.03241 1.48445 1.06530 1.03953 1.57430 1.22384 0.90947 0.93332 1.02493 1.20200 0.94606 0.94017 1.15311 1.19588 0.93337 0.98418 0.94974 1.21606 0.95954 0.99893 0.99411 1.20523 0.85655 0.81935 0.83642 1.90591 1.62984 1.56545 1.31467 1.42602 1.27769 1.48648 1.08064 1.17313 0.96035 1.08915 0.94114 1.24121 0.96167 1.01841 0.98879 1.78240 1.19979 1.22897 0.88090 1.44546 1.15502 1.26848 1.04381 1.19894 1.06674 1.28848 0.90109 0.86653 1.25638 0.98297 0.97002 0.96222 1.70231 1.28366 1.31807 1.09353 0.85773 0.79616 0.79042 0.79752 1.18727 1.19957 1.19946 1.21273 0.97323 1.08055 0.96980 1.23866 0.95103 0.94777 0.99529 1.77340 1.01828 1.08343 1.24873 0.90910 0.89522 0.89431 0.80952 0.90239 0.90589 0.89602 0.89376 0.77124 0.80695 0.91571 0.83803 0.79988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.47 59.85 0.69 1.22 16 2 N -0.38 -3.63 4.01 -68.16 -0.27 -3.90 16 3 C 0.05 0.50 11.40 -17.22 -0.20 0.30 16 4 C -0.23 -2.41 5.35 -105.06 -0.56 -2.97 16 5 C -0.02 -0.27 4.99 -27.88 -0.14 -0.41 16 6 C -0.13 -1.45 5.68 -27.88 -0.16 -1.61 16 7 C 0.50 8.35 7.80 -10.98 -0.09 8.27 16 8 O -0.54 -11.28 13.13 5.54 0.07 -11.20 16 9 N -0.63 -11.05 5.47 -10.00 -0.05 -11.11 16 10 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 11 C -0.03 -0.92 10.85 -17.04 -0.18 -1.11 16 12 N -0.26 -7.69 10.40 30.80 0.32 -7.37 16 13 N -0.14 -4.03 3.74 -11.41 -0.04 -4.07 16 14 C -0.32 -8.64 10.25 -14.82 -0.15 -8.79 16 15 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 16 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 17 N -0.77 -21.79 11.81 55.49 0.66 -21.13 16 18 Si 0.93 19.10 29.55 -169.99 -5.02 14.08 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.09 -2.03 11.49 -16.39 -0.19 -2.22 16 23 C 0.05 0.58 11.96 -17.36 -0.21 0.37 16 24 N -0.30 -3.58 12.58 30.62 0.39 -3.19 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 5.33 8.83 -40.82 -0.36 4.97 16 34 H 0.18 4.62 5.92 -52.49 -0.31 4.31 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 37 H 0.18 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -36.32 327.62 -5.33 -41.64 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -4.44 Total: 9.14 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.86 Total: -7.82 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.99 Total: -50.77 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.32 -5.33 -41.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139314265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.277 kcal (2) G-P(sol) polarization free energy of solvation -36.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds