Wall clock time and date at job start Tue Mar 31 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 C 1.50696 * 109.47276 * 120.00529 * 2 1 3 5 5 C 1.35365 * 126.38351 * 144.99505 * 4 2 1 6 6 C 1.41516 * 105.50207 * 180.02562 * 5 4 2 7 7 C 1.47687 * 126.51869 * 180.02562 * 6 5 4 8 8 O 1.21603 * 120.00354 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99984 * 180.02562 * 7 6 5 10 10 C 1.40535 * 120.00225 * 180.02562 * 9 7 6 11 11 C 1.40667 * 126.08164 * 359.97438 * 10 9 7 12 12 N 1.30909 * 108.38386 * 179.71870 * 11 10 9 13 13 N 1.40065 * 108.41100 * 0.43844 * 12 11 10 14 14 C 1.37320 * 126.06888 * 179.81749 * 13 12 11 15 15 H 1.08002 * 120.00430 * 179.69737 * 14 13 12 16 16 C 1.38992 * 119.99664 * 359.41613 * 14 13 12 17 17 N 1.31294 * 120.00157 * 0.27652 * 16 14 13 18 18 Si 1.86803 * 119.99838 * 180.27798 * 16 14 13 19 19 H 1.48504 * 109.47034 * 59.99910 * 18 16 14 20 20 H 1.48498 * 109.47326 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 299.99983 * 18 16 14 22 22 C 1.35694 * 126.08854 * 179.97438 * 10 9 7 23 23 N 1.31813 * 106.96057 * 0.26030 * 6 5 4 24 24 N 1.28472 * 110.07050 * 359.56096 * 23 6 5 25 25 H 0.97001 * 124.88444 * 180.17424 * 24 23 6 26 26 H 1.09002 * 109.46529 * 299.99706 * 1 2 3 27 27 H 1.08997 * 109.46871 * 59.99272 * 1 2 3 28 28 H 1.08995 * 109.47345 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46529 * 240.00294 * 2 1 3 30 30 H 1.08998 * 109.46647 * 60.00460 * 3 2 1 31 31 H 1.09004 * 109.47028 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47238 * 300.00232 * 3 2 1 33 33 H 1.07997 * 127.25480 * 0.05950 * 5 4 2 34 34 H 0.96997 * 119.99819 * 359.97438 * 9 7 6 35 35 H 1.07995 * 125.80699 * 0.02562 * 11 10 9 36 36 H 0.97005 * 119.99961 * 179.97438 * 17 16 14 37 37 H 1.08003 * 126.24502 * 0.04244 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 3.1417 -1.4816 1.3156 6 6 3.1926 -1.9238 2.6590 7 6 4.2220 -2.7968 3.2584 8 8 5.1419 -3.2081 2.5778 9 7 4.1412 -3.1385 4.5597 10 6 5.1210 -3.9688 5.1303 11 6 6.2346 -4.5136 4.4657 12 7 6.9198 -5.2261 5.3240 13 7 6.2683 -5.1730 6.5628 14 6 6.6746 -5.7960 7.7172 15 1 6.0973 -5.6841 8.6231 16 6 7.8255 -6.5752 7.7183 17 7 8.5272 -6.7113 6.6170 18 14 8.3738 -7.4289 9.2867 19 1 7.3099 -8.3597 9.7416 20 1 9.6209 -8.1917 9.0252 21 1 8.6270 -6.4136 10.3404 22 6 5.1613 -4.3875 6.4204 23 7 2.1437 -1.4125 3.2721 24 7 1.4597 -0.6971 2.4531 25 1 0.6463 -0.2194 2.6794 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6768 1.9562 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 3.8409 -1.7107 0.5252 34 1 3.4072 -2.8107 5.1025 35 1 6.4847 -4.3650 3.4257 36 1 9.3307 -7.2549 6.6179 37 1 4.4472 -4.1442 7.1933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139382423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:50 Heat of formation + Delta-G solvation = 112.796517 kcal Electronic energy + Delta-G solvation = -21621.599857 eV Core-core repulsion = 18209.399006 eV Total energy + Delta-G solvation = -3412.200850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.73946 -39.73288 -38.26206 -36.01089 -34.12545 -33.08880 -31.82885 -30.20809 -29.85452 -27.75450 -27.56434 -25.11201 -23.71496 -22.72538 -21.04335 -20.85575 -19.66630 -19.22217 -17.73343 -17.22563 -16.34588 -15.82638 -15.41178 -15.31313 -14.92472 -14.27427 -14.17457 -14.06251 -13.72005 -13.42097 -13.27404 -13.01265 -12.82529 -12.67936 -11.75654 -11.66823 -11.60480 -11.51576 -11.35958 -11.20340 -10.91748 -10.79551 -10.52008 -10.09536 -9.34445 -9.31958 -9.09396 -9.02643 -8.74623 -7.99103 -6.61308 -6.50086 -4.16434 1.68285 2.11735 2.78068 3.01043 3.08500 3.12488 3.49732 3.66013 3.91315 3.92267 4.25132 4.37580 4.55086 4.58969 4.66495 4.93352 4.97689 5.07886 5.13174 5.26852 5.34072 5.47040 5.53773 5.66637 5.68427 5.82417 5.92547 6.32220 6.37151 6.55744 6.88127 6.98153 7.03683 7.20563 7.30578 7.82701 7.92461 8.29012 8.37183 8.69696 8.94097 9.44214 9.73568 10.45952 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.060177 B = 0.002696 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.179891 B =10381.460890 C =10688.618895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.026 4.026 3 C -0.146 4.146 4 C 0.017 3.983 5 C -0.176 4.176 6 C 0.007 3.993 7 C 0.583 3.417 8 O -0.529 6.529 9 N -0.608 5.608 10 C -0.059 4.059 11 C -0.032 4.032 12 N -0.260 5.260 13 N -0.143 5.143 14 C -0.323 4.323 15 H 0.116 0.884 16 C 0.046 3.954 17 N -0.770 5.770 18 Si 0.935 3.065 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.082 4.082 23 N -0.265 5.265 24 N -0.383 5.383 25 H 0.440 0.560 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.162 0.838 34 H 0.403 0.597 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.541 13.485 -9.367 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.109 4.109 5 C -0.204 4.204 6 C -0.154 4.154 7 C 0.367 3.633 8 O -0.404 6.404 9 N -0.250 5.250 10 C -0.164 4.164 11 C -0.208 4.208 12 N -0.091 5.091 13 N 0.089 4.911 14 C -0.455 4.455 15 H 0.133 0.867 16 C -0.171 4.171 17 N -0.397 5.397 18 Si 0.758 3.242 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.233 4.233 23 N -0.101 5.101 24 N -0.096 5.096 25 H 0.284 0.716 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.179 0.821 34 H 0.236 0.764 35 H 0.194 0.806 36 H 0.086 0.914 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.108 12.327 -8.723 20.666 hybrid contribution -1.058 0.610 0.311 1.260 sum -15.166 12.937 -8.412 21.636 Atomic orbital electron populations 1.21902 0.94336 1.02510 1.02352 1.19752 0.95711 0.95801 0.93294 1.21876 1.02102 0.94411 1.02034 1.21314 0.96856 1.03850 0.88899 1.21517 0.99410 1.02291 0.97139 1.22081 0.96066 1.03519 0.93767 1.16705 0.84143 0.80735 0.81727 1.90690 1.33578 1.54782 1.61343 1.42338 1.26098 1.47159 1.09386 1.17273 0.97240 1.08799 0.93117 1.24138 0.94626 1.01434 1.00563 1.78244 1.19110 1.23297 0.88467 1.44535 1.12587 1.26381 1.07549 1.19817 1.10358 1.28697 0.86643 0.86686 1.25639 0.95839 0.96838 0.98800 1.70212 1.12810 1.30576 1.26106 0.85901 0.78575 0.79368 0.80313 1.19191 1.20168 1.19191 1.21262 0.97853 1.07610 0.96548 1.73574 1.06343 1.09280 1.20875 1.43214 1.22698 1.37330 1.06397 0.71571 0.92926 0.91326 0.91954 0.88353 0.92742 0.91733 0.91741 0.82068 0.76353 0.80607 0.91445 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.95 37.16 0.33 -0.39 16 2 C -0.03 -0.16 3.32 -91.77 -0.30 -0.47 16 3 C -0.15 -0.84 9.18 37.16 0.34 -0.50 16 4 C 0.02 0.17 5.92 -82.21 -0.49 -0.32 16 5 C -0.18 -2.35 10.73 -39.36 -0.42 -2.77 16 6 C 0.01 0.12 7.13 -82.77 -0.59 -0.47 16 7 C 0.58 11.65 7.79 -12.40 -0.10 11.55 16 8 O -0.53 -12.17 14.07 5.28 0.07 -12.09 16 9 N -0.61 -12.21 5.46 -10.89 -0.06 -12.27 16 10 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 11 C -0.03 -0.87 10.85 -17.03 -0.18 -1.06 16 12 N -0.26 -7.78 10.40 30.80 0.32 -7.46 16 13 N -0.14 -4.04 3.74 -11.41 -0.04 -4.08 16 14 C -0.32 -8.74 10.25 -14.81 -0.15 -8.89 16 15 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 16 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 17 N -0.77 -21.93 11.81 55.50 0.66 -21.28 16 18 Si 0.93 19.27 29.55 -169.99 -5.02 14.25 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 23 N -0.27 -3.62 11.92 33.42 0.40 -3.22 16 24 N -0.38 -3.78 6.64 33.50 0.22 -3.56 16 25 H 0.44 2.75 8.14 -190.44 -1.55 1.20 16 26 H 0.05 0.20 7.43 -51.93 -0.39 -0.19 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.40 6.84 8.55 -40.82 -0.35 6.49 16 35 H 0.18 4.74 5.91 -52.49 -0.31 4.43 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.15 3.01 8.06 -52.48 -0.42 2.58 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -34.87 324.06 -6.52 -41.39 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.52 Total: 9.84 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.43 Total: -6.42 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 1.49 Total: -51.86 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.87 -6.52 -41.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139382423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.189 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds