Wall clock time and date at job start Tue Mar 31 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 C 1.50696 * 109.47276 * 120.00529 * 2 1 3 5 5 C 1.35365 * 126.38351 * 144.99505 * 4 2 1 6 6 C 1.41516 * 105.50207 * 180.02562 * 5 4 2 7 7 C 1.47687 * 126.51869 * 180.02562 * 6 5 4 8 8 O 1.21603 * 120.00354 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99984 * 180.02562 * 7 6 5 10 10 C 1.40535 * 120.00225 * 180.02562 * 9 7 6 11 11 C 1.40667 * 126.08164 * 359.97438 * 10 9 7 12 12 N 1.30909 * 108.38386 * 179.71870 * 11 10 9 13 13 N 1.40065 * 108.41100 * 0.43844 * 12 11 10 14 14 C 1.37320 * 126.06888 * 179.81749 * 13 12 11 15 15 H 1.08002 * 120.00430 * 179.69737 * 14 13 12 16 16 C 1.38992 * 119.99664 * 359.41613 * 14 13 12 17 17 N 1.31294 * 120.00157 * 0.27652 * 16 14 13 18 18 Si 1.86803 * 119.99838 * 180.27798 * 16 14 13 19 19 H 1.48504 * 109.47034 * 59.99910 * 18 16 14 20 20 H 1.48498 * 109.47326 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 299.99983 * 18 16 14 22 22 C 1.35694 * 126.08854 * 179.97438 * 10 9 7 23 23 N 1.31813 * 106.96057 * 0.26030 * 6 5 4 24 24 N 1.28472 * 110.07050 * 359.56096 * 23 6 5 25 25 H 0.97001 * 124.88444 * 180.17424 * 24 23 6 26 26 H 1.09002 * 109.46529 * 299.99706 * 1 2 3 27 27 H 1.08997 * 109.46871 * 59.99272 * 1 2 3 28 28 H 1.08995 * 109.47345 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46529 * 240.00294 * 2 1 3 30 30 H 1.08998 * 109.46647 * 60.00460 * 3 2 1 31 31 H 1.09004 * 109.47028 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47238 * 300.00232 * 3 2 1 33 33 H 1.07997 * 127.25480 * 0.05950 * 5 4 2 34 34 H 0.96997 * 119.99819 * 359.97438 * 9 7 6 35 35 H 1.07995 * 125.80699 * 0.02562 * 11 10 9 36 36 H 0.97005 * 119.99961 * 179.97438 * 17 16 14 37 37 H 1.08003 * 126.24502 * 0.04244 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 3.1417 -1.4816 1.3156 6 6 3.1926 -1.9238 2.6590 7 6 4.2220 -2.7968 3.2584 8 8 5.1419 -3.2081 2.5778 9 7 4.1412 -3.1385 4.5597 10 6 5.1210 -3.9688 5.1303 11 6 6.2346 -4.5136 4.4657 12 7 6.9198 -5.2261 5.3240 13 7 6.2683 -5.1730 6.5628 14 6 6.6746 -5.7960 7.7172 15 1 6.0973 -5.6841 8.6231 16 6 7.8255 -6.5752 7.7183 17 7 8.5272 -6.7113 6.6170 18 14 8.3738 -7.4289 9.2867 19 1 7.3099 -8.3597 9.7416 20 1 9.6209 -8.1917 9.0252 21 1 8.6270 -6.4136 10.3404 22 6 5.1613 -4.3875 6.4204 23 7 2.1437 -1.4125 3.2721 24 7 1.4597 -0.6971 2.4531 25 1 0.6463 -0.2194 2.6794 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6768 1.9562 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 3.8409 -1.7107 0.5252 34 1 3.4072 -2.8107 5.1025 35 1 6.4847 -4.3650 3.4257 36 1 9.3307 -7.2549 6.6179 37 1 4.4472 -4.1442 7.1933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139382423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:50 Heat of formation + Delta-G solvation = 87.581151 kcal Electronic energy + Delta-G solvation = -21622.693277 eV Core-core repulsion = 18209.399006 eV Total energy + Delta-G solvation = -3413.294271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.75414 -41.66859 -40.00575 -36.61452 -35.95329 -34.97449 -32.96307 -32.20746 -30.86139 -29.56943 -28.01656 -27.00017 -25.12540 -23.57531 -22.82723 -21.97243 -21.38868 -20.88492 -19.30025 -18.38878 -17.81072 -17.37237 -16.90287 -16.82075 -15.88747 -15.81369 -15.67311 -15.15991 -14.97808 -14.91577 -14.73110 -14.44540 -13.87763 -13.48149 -13.32303 -13.02562 -12.88042 -12.86806 -12.36401 -12.15712 -12.12458 -12.07965 -11.87498 -11.65392 -11.04415 -11.01046 -10.81751 -10.44016 -10.09907 -9.96475 -8.54529 -8.46289 -6.23793 0.45654 1.09007 1.33294 1.40485 1.57435 1.75901 1.84722 2.09048 2.14450 2.32184 2.66864 2.89501 3.09725 3.42482 3.57433 3.89839 4.20642 4.28383 4.42205 4.45312 4.57501 4.62041 4.72421 4.80076 4.98505 4.99997 5.03833 5.07487 5.18807 5.28054 5.30688 5.37445 5.40440 5.42781 5.95157 6.09820 6.30051 6.61587 6.72406 6.89793 7.29889 7.45587 7.66554 8.53094 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.060177 B = 0.002696 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.179891 B =10381.460890 C =10688.618895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.045 3.955 5 C -0.199 4.199 6 C -0.024 4.024 7 C 0.583 3.417 8 O -0.566 6.566 9 N -0.603 5.603 10 C -0.047 4.047 11 C -0.057 4.057 12 N -0.307 5.307 13 N -0.165 5.165 14 C -0.354 4.354 15 H 0.142 0.858 16 C -0.007 4.007 17 N -0.824 5.824 18 Si 1.022 2.978 19 H -0.253 1.253 20 H -0.277 1.277 21 H -0.253 1.253 22 C -0.080 4.080 23 N -0.266 5.266 24 N -0.359 5.359 25 H 0.460 0.540 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.419 0.581 35 H 0.170 0.830 36 H 0.277 0.723 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.261 15.053 -8.582 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.044 4.044 3 C -0.203 4.203 4 C -0.082 4.082 5 C -0.228 4.228 6 C -0.183 4.183 7 C 0.370 3.630 8 O -0.444 6.444 9 N -0.247 5.247 10 C -0.154 4.154 11 C -0.233 4.233 12 N -0.140 5.140 13 N 0.066 4.934 14 C -0.485 4.485 15 H 0.159 0.841 16 C -0.219 4.219 17 N -0.452 5.452 18 Si 0.840 3.160 19 H -0.177 1.177 20 H -0.202 1.202 21 H -0.177 1.177 22 C -0.230 4.230 23 N -0.103 5.103 24 N -0.076 5.076 25 H 0.308 0.692 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.177 0.823 34 H 0.256 0.744 35 H 0.186 0.814 36 H 0.087 0.913 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.896 13.940 -7.935 23.298 hybrid contribution -0.381 0.283 -0.073 0.480 sum -17.277 14.223 -8.008 23.768 Atomic orbital electron populations 1.21919 0.92493 1.02650 1.03931 1.19925 0.97142 0.95847 0.91444 1.21876 1.01266 0.93876 1.03280 1.21734 0.95021 1.01758 0.89716 1.21666 1.01103 1.03750 0.96231 1.21529 0.96677 1.05151 0.94950 1.17278 0.84320 0.80202 0.81235 1.90661 1.35395 1.56170 1.62147 1.42269 1.25785 1.46818 1.09833 1.17351 0.96937 1.08133 0.92934 1.24181 0.96158 1.02530 1.00385 1.78143 1.20964 1.24980 0.89873 1.44848 1.13595 1.27546 1.07415 1.20616 1.11457 1.29234 0.87214 0.84096 1.26927 0.95312 0.96974 1.02704 1.70399 1.13623 1.31968 1.29188 0.84625 0.78036 0.78181 0.75165 1.17687 1.20227 1.17686 1.21956 0.97415 1.06154 0.97497 1.73482 1.05864 1.09549 1.21450 1.43302 1.22558 1.35704 1.05992 0.69190 0.91615 0.89648 0.92523 0.87715 0.92340 0.93117 0.89729 0.82258 0.74413 0.81358 0.91307 0.79522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.95 71.98 0.64 -0.22 16 2 C -0.02 -0.23 3.32 -11.54 -0.04 -0.27 16 3 C -0.15 -1.23 9.18 71.98 0.66 -0.57 16 4 C 0.04 0.79 5.92 41.40 0.25 1.03 16 5 C -0.20 -5.23 10.73 22.41 0.24 -4.99 16 6 C -0.02 -0.75 7.13 42.45 0.30 -0.45 16 7 C 0.58 23.86 7.79 86.74 0.68 24.54 16 8 O -0.57 -27.34 14.07 -4.04 -0.06 -27.39 16 9 N -0.60 -24.34 5.46 -306.63 -1.67 -26.01 16 10 C -0.05 -2.36 6.90 37.75 0.26 -2.10 16 11 C -0.06 -3.30 10.85 85.42 0.93 -2.38 16 12 N -0.31 -19.24 10.40 -56.46 -0.59 -19.83 16 13 N -0.17 -9.52 3.74 -190.00 -0.71 -10.23 16 14 C -0.35 -19.24 10.25 84.01 0.86 -18.38 16 15 H 0.14 6.61 7.83 -2.91 -0.02 6.59 16 16 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 17 N -0.82 -48.57 11.81 21.66 0.26 -48.31 16 18 Si 1.02 39.28 29.55 68.60 2.03 41.31 16 19 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 20 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 22 C -0.08 -3.91 11.49 83.38 0.96 -2.96 16 23 N -0.27 -6.83 11.92 -48.18 -0.57 -7.40 16 24 N -0.36 -6.12 6.64 -47.93 -0.32 -6.44 16 25 H 0.46 4.05 8.14 -219.99 -1.79 2.26 16 26 H 0.06 0.21 7.43 -2.39 -0.02 0.19 16 27 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.42 13.86 8.55 -92.71 -0.79 13.07 16 35 H 0.17 9.74 5.91 -2.91 -0.02 9.72 16 36 H 0.28 15.01 8.31 -92.70 -0.77 14.24 16 37 H 0.19 7.32 8.06 -2.91 -0.02 7.29 16 Total: -1.00 -80.21 324.06 3.11 -77.09 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -1.45 Total: 33.88 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 6.20 Total: -6.67 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -3.61 Total: -118.22 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -80.21 3.11 -77.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139382423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.675 kcal (2) G-P(sol) polarization free energy of solvation -80.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds