Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48501 * 109.47135 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47333 * 240.00465 * 3 2 1 6 6 H 1.48493 * 109.47458 * 120.00045 * 3 2 1 7 7 C 1.37877 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47232 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47163 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47321 * 180.02562 * 11 10 9 13 13 C 1.47908 * 111.00042 * 189.84482 * 12 11 10 14 14 C 1.54606 * 102.62179 * 265.48524 * 13 12 11 15 15 H 1.09002 * 110.73871 * 92.80764 * 14 13 12 16 16 C 1.52996 * 110.89537 * 216.05839 * 14 13 12 17 17 C 1.50705 * 109.47447 * 287.92453 * 16 14 13 18 18 O 1.20831 * 119.99624 * 354.37203 * 17 16 14 19 19 O 1.34224 * 120.00249 * 174.37672 * 17 16 14 20 20 C 1.51569 * 102.83786 * 334.46809 * 14 13 12 21 21 C 1.37922 * 131.56310 * 196.29044 * 20 14 13 22 22 C 1.38297 * 120.08053 * 179.29876 * 21 20 14 23 23 C 1.38312 * 119.88402 * 359.97438 * 22 21 20 24 24 C 1.37908 * 120.26356 * 0.16599 * 23 22 21 25 25 C 1.38962 * 107.95502 * 15.93851 * 20 14 13 26 26 H 0.97002 * 119.99589 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47563 * 300.00520 * 9 7 2 28 28 H 1.09003 * 109.47295 * 60.00359 * 9 7 2 29 29 H 1.08999 * 109.47317 * 300.00178 * 10 9 7 30 30 H 1.08994 * 109.46795 * 60.00255 * 10 9 7 31 31 H 1.08998 * 109.47548 * 300.00538 * 11 10 9 32 32 H 1.09003 * 109.47378 * 60.00419 * 11 10 9 33 33 H 1.08999 * 110.78320 * 23.77362 * 13 12 11 34 34 H 1.09002 * 110.77774 * 147.20719 * 13 12 11 35 35 H 1.09003 * 109.47256 * 47.91980 * 16 14 13 36 36 H 1.08999 * 109.47489 * 167.92321 * 16 14 13 37 37 H 0.96705 * 117.00192 * 180.02562 * 19 17 16 38 38 H 1.07996 * 119.95689 * 359.29767 * 21 20 14 39 39 H 1.08001 * 120.06130 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.86545 * 180.14628 * 23 22 21 41 41 H 1.07996 * 119.89923 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 -1.2126 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 7 2.4351 -6.1036 -0.0031 13 6 1.7455 -7.3905 -0.2398 14 6 1.4965 -7.9093 1.1951 15 1 0.5137 -7.6012 1.5519 16 6 1.6407 -9.4312 1.2578 17 6 0.4631 -10.0761 0.5733 18 8 -0.4519 -9.3946 0.1753 19 8 0.4307 -11.4074 0.4057 20 6 2.5935 -7.2329 1.9929 21 6 3.1042 -7.4908 3.2479 22 6 4.1353 -6.7174 3.7490 23 6 4.6542 -5.6847 2.9892 24 6 4.1452 -5.4208 1.7350 25 6 3.1031 -6.1933 1.2245 26 1 -0.4849 -0.8401 -0.0004 27 1 0.6247 -2.5571 0.8896 28 1 0.6241 -2.5568 -0.8903 29 1 2.8714 -3.6039 -0.8922 30 1 2.8727 -3.6047 0.8877 31 1 0.8542 -5.0455 0.8877 32 1 0.8535 -5.0443 -0.8923 33 1 0.8024 -7.2333 -0.7633 34 1 2.3866 -8.0767 -0.7933 35 1 2.5610 -9.7300 0.7559 36 1 1.6749 -9.7504 2.2995 37 1 -0.3452 -11.7752 -0.0393 38 1 2.6983 -8.2977 3.8399 39 1 4.5347 -6.9194 4.7319 40 1 5.4611 -5.0824 3.3799 41 1 4.5546 -4.6128 1.1469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148087091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = -69.939605 kcal Electronic energy + Delta-G solvation = -22643.148315 eV Core-core repulsion = 19294.271024 eV Total energy + Delta-G solvation = -3348.877291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22565 -40.21725 -36.92464 -36.44650 -34.85643 -33.44331 -31.28251 -30.28330 -29.36051 -27.43969 -25.58088 -23.24001 -22.97373 -22.13911 -21.21551 -20.27866 -20.05033 -18.40759 -17.13804 -16.75151 -16.48271 -16.13117 -15.63089 -15.34219 -15.03929 -14.43179 -14.04621 -13.69198 -13.57608 -13.26656 -13.05634 -12.99028 -12.68468 -12.42406 -12.07279 -11.89703 -11.80655 -11.55791 -11.42986 -11.29078 -10.91780 -10.77655 -10.73669 -10.56015 -10.09753 -9.80898 -9.71443 -9.26603 -8.77005 -8.49445 -8.28176 -7.80148 -6.31841 -4.00287 1.33476 1.44309 1.89866 2.70732 3.46320 3.48705 3.66194 3.67524 3.85002 4.33288 4.44393 4.57576 4.59579 4.87430 4.98801 5.08136 5.15963 5.17933 5.23451 5.43743 5.45454 5.53065 5.67138 5.69360 5.70779 5.82268 5.86763 6.07476 6.16656 6.18570 6.39373 6.44097 6.55396 6.56361 6.68313 6.80425 7.01210 7.13984 7.40386 7.45940 7.56979 7.59452 8.27035 8.51080 8.93201 9.71938 11.08848 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.003729 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.585745 B = 7506.703539 C = 8621.130130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.048 0.952 9 C 0.010 3.990 10 C -0.103 4.103 11 C 0.058 3.942 12 N -0.495 5.495 13 C 0.055 3.945 14 C -0.065 4.065 15 H 0.099 0.901 16 C -0.098 4.098 17 C 0.477 3.523 18 O -0.509 6.509 19 O -0.519 6.519 20 C -0.145 4.145 21 C -0.090 4.090 22 C -0.138 4.138 23 C -0.100 4.100 24 C -0.106 4.106 25 C 0.110 3.890 26 H 0.268 0.732 27 H 0.005 0.995 28 H 0.006 0.994 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.410 0.590 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -22.814 4.967 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.637 4.637 8 H 0.067 0.933 9 C -0.028 4.028 10 C -0.141 4.141 11 C -0.066 4.066 12 N -0.211 5.211 13 C -0.072 4.072 14 C -0.084 4.084 15 H 0.117 0.883 16 C -0.136 4.136 17 C 0.319 3.681 18 O -0.396 6.396 19 O -0.332 6.332 20 C -0.148 4.148 21 C -0.108 4.108 22 C -0.157 4.157 23 C -0.119 4.119 24 C -0.126 4.126 25 C 0.014 3.986 26 H 0.078 0.922 27 H 0.023 0.977 28 H 0.025 0.975 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.269 0.731 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.977 -20.674 4.568 22.000 hybrid contribution -0.908 -2.121 0.306 2.327 sum 5.070 -22.794 4.874 23.855 Atomic orbital electron populations 1.70779 1.06893 1.30549 1.46862 1.25855 0.96573 1.02732 0.93872 0.83552 0.74888 0.75368 0.76498 1.20802 1.21436 1.21466 1.22028 0.94253 0.91956 1.55454 0.93342 1.19187 0.94621 0.93150 0.95804 1.21634 0.99095 0.91966 1.01373 1.22465 0.93034 0.90320 1.00806 1.60251 1.27285 1.04525 1.29062 1.23266 0.99024 0.90124 0.94798 1.21116 0.98650 0.92012 0.96642 0.88342 1.21322 0.95394 0.94397 1.02465 1.23541 0.88080 0.80031 0.76445 1.90762 1.38121 1.63878 1.46887 1.84533 1.49944 1.24378 1.74317 1.20786 0.98277 1.00518 0.95214 1.20292 0.96809 0.99790 0.93944 1.20983 0.98007 0.96714 1.00001 1.20975 0.99750 0.97312 0.93863 1.20717 0.95661 0.99954 0.96224 1.19547 0.94797 0.95324 0.88953 0.92158 0.97722 0.97530 0.92390 0.92625 0.94583 0.90545 0.89143 0.89801 0.87232 0.87248 0.73105 0.86518 0.85955 0.85611 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.74 13.65 55.43 0.76 -27.99 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.85 29.90 -169.99 -5.08 20.77 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.60 -17.55 9.11 -34.44 -0.31 -17.86 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 10 C -0.10 -2.23 5.02 -26.73 -0.13 -2.36 16 11 C 0.06 1.07 4.75 -3.83 -0.02 1.05 16 12 N -0.49 -7.95 5.06 -169.01 -0.86 -8.80 16 13 C 0.06 0.73 5.92 -2.42 -0.01 0.71 16 14 C -0.06 -0.76 2.56 -90.50 -0.23 -0.99 16 15 H 0.10 1.29 7.78 -51.93 -0.40 0.89 16 16 C -0.10 -0.83 5.22 -27.88 -0.15 -0.97 16 17 C 0.48 4.48 8.13 36.01 0.29 4.77 16 18 O -0.51 -6.54 16.12 -18.75 -0.30 -6.85 16 19 O -0.52 -3.59 13.42 -39.24 -0.53 -4.12 16 20 C -0.15 -1.90 5.67 -104.04 -0.59 -2.49 16 21 C -0.09 -1.01 9.77 -39.68 -0.39 -1.40 16 22 C -0.14 -1.55 10.06 -39.53 -0.40 -1.95 16 23 C -0.10 -1.26 10.02 -39.67 -0.40 -1.66 16 24 C -0.11 -1.59 8.54 -39.27 -0.34 -1.93 16 25 C 0.11 1.70 5.28 -83.40 -0.44 1.26 16 26 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 27 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 28 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.20 5.58 -51.93 -0.29 0.91 16 31 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.08 1.37 7.85 -51.93 -0.41 0.97 16 33 H 0.09 1.23 7.48 -51.93 -0.39 0.85 16 34 H 0.08 0.98 7.79 -51.93 -0.40 0.57 16 35 H 0.11 0.80 7.95 -51.93 -0.41 0.39 16 36 H 0.11 0.73 7.84 -51.93 -0.41 0.32 16 37 H 0.41 1.25 9.10 45.56 0.41 1.66 16 38 H 0.12 1.00 7.89 -52.49 -0.41 0.59 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.13 2.03 7.18 -52.49 -0.38 1.65 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -34.82 338.99 -9.34 -44.15 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.10 Total: 1.10 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -3.33 Total: -23.38 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.10 Total: -36.79 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.83 Total: -10.96 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.82 -9.34 -44.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148087091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.786 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds