Wall clock time and date at job start Tue Mar 31 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48501 * 109.47135 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47333 * 240.00465 * 3 2 1 6 6 H 1.48493 * 109.47458 * 120.00045 * 3 2 1 7 7 C 1.37877 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47232 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47163 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47321 * 180.02562 * 11 10 9 13 13 C 1.47908 * 111.00042 * 189.84482 * 12 11 10 14 14 C 1.54606 * 102.62179 * 265.48524 * 13 12 11 15 15 H 1.09002 * 110.73871 * 92.80764 * 14 13 12 16 16 C 1.52996 * 110.89537 * 216.05839 * 14 13 12 17 17 C 1.50705 * 109.47447 * 287.92453 * 16 14 13 18 18 O 1.20831 * 119.99624 * 354.37203 * 17 16 14 19 19 O 1.34224 * 120.00249 * 174.37672 * 17 16 14 20 20 C 1.51569 * 102.83786 * 334.46809 * 14 13 12 21 21 C 1.37922 * 131.56310 * 196.29044 * 20 14 13 22 22 C 1.38297 * 120.08053 * 179.29876 * 21 20 14 23 23 C 1.38312 * 119.88402 * 359.97438 * 22 21 20 24 24 C 1.37908 * 120.26356 * 0.16599 * 23 22 21 25 25 C 1.38962 * 107.95502 * 15.93851 * 20 14 13 26 26 H 0.97002 * 119.99589 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47563 * 300.00520 * 9 7 2 28 28 H 1.09003 * 109.47295 * 60.00359 * 9 7 2 29 29 H 1.08999 * 109.47317 * 300.00178 * 10 9 7 30 30 H 1.08994 * 109.46795 * 60.00255 * 10 9 7 31 31 H 1.08998 * 109.47548 * 300.00538 * 11 10 9 32 32 H 1.09003 * 109.47378 * 60.00419 * 11 10 9 33 33 H 1.08999 * 110.78320 * 23.77362 * 13 12 11 34 34 H 1.09002 * 110.77774 * 147.20719 * 13 12 11 35 35 H 1.09003 * 109.47256 * 47.91980 * 16 14 13 36 36 H 1.08999 * 109.47489 * 167.92321 * 16 14 13 37 37 H 0.96705 * 117.00192 * 180.02562 * 19 17 16 38 38 H 1.07996 * 119.95689 * 359.29767 * 21 20 14 39 39 H 1.08001 * 120.06130 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.86545 * 180.14628 * 23 22 21 41 41 H 1.07996 * 119.89923 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 -1.2126 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 7 2.4351 -6.1036 -0.0031 13 6 1.7455 -7.3905 -0.2398 14 6 1.4965 -7.9093 1.1951 15 1 0.5137 -7.6012 1.5519 16 6 1.6407 -9.4312 1.2578 17 6 0.4631 -10.0761 0.5733 18 8 -0.4519 -9.3946 0.1753 19 8 0.4307 -11.4074 0.4057 20 6 2.5935 -7.2329 1.9929 21 6 3.1042 -7.4908 3.2479 22 6 4.1353 -6.7174 3.7490 23 6 4.6542 -5.6847 2.9892 24 6 4.1452 -5.4208 1.7350 25 6 3.1031 -6.1933 1.2245 26 1 -0.4849 -0.8401 -0.0004 27 1 0.6247 -2.5571 0.8896 28 1 0.6241 -2.5568 -0.8903 29 1 2.8714 -3.6039 -0.8922 30 1 2.8727 -3.6047 0.8877 31 1 0.8542 -5.0455 0.8877 32 1 0.8535 -5.0443 -0.8923 33 1 0.8024 -7.2333 -0.7633 34 1 2.3866 -8.0767 -0.7933 35 1 2.5610 -9.7300 0.7559 36 1 1.6749 -9.7504 2.2995 37 1 -0.3452 -11.7752 -0.0393 38 1 2.6983 -8.2977 3.8399 39 1 4.5347 -6.9194 4.7319 40 1 5.4611 -5.0824 3.3799 41 1 4.5546 -4.6128 1.1469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148087091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:20 Heat of formation + Delta-G solvation = -92.364895 kcal Electronic energy + Delta-G solvation = -22644.120748 eV Core-core repulsion = 19294.271024 eV Total energy + Delta-G solvation = -3349.849725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.20786 -41.01828 -37.97089 -37.20376 -36.49102 -35.02044 -33.00484 -31.19613 -30.47589 -28.81318 -27.08204 -24.97278 -24.10967 -22.99687 -22.72034 -21.65632 -21.01593 -19.10819 -18.95352 -17.92776 -17.46212 -17.05213 -16.65940 -16.38053 -16.27334 -15.68141 -15.65428 -15.26435 -15.06006 -14.47851 -14.12840 -14.02778 -13.82011 -13.65945 -13.43609 -13.33525 -12.81271 -12.73879 -12.61355 -12.48416 -12.44542 -12.12010 -11.99982 -11.85248 -11.70258 -11.61702 -11.58715 -10.73777 -10.57097 -10.36611 -9.75378 -8.92735 -8.72290 -6.42529 0.34168 0.44859 1.20224 1.50719 1.59995 1.79491 2.09731 2.53087 2.59284 2.83423 3.13096 3.44632 3.56185 3.68831 3.90207 4.03535 4.12219 4.14040 4.22515 4.36998 4.46483 4.47699 4.50280 4.59935 4.62621 4.69104 4.71239 4.76305 4.83966 4.95951 4.97765 5.13896 5.33881 5.43079 5.46314 5.48595 5.59642 5.62570 5.83055 5.87518 5.98821 6.14702 6.29375 6.53910 6.98706 7.39979 8.68450 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.003729 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.585745 B = 7506.703539 C = 8621.130130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.041 4.041 3 Si 1.119 2.881 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.618 4.618 8 H 0.051 0.949 9 C 0.012 3.988 10 C -0.086 4.086 11 C 0.072 3.928 12 N -0.504 5.504 13 C 0.053 3.947 14 C -0.058 4.058 15 H 0.080 0.920 16 C -0.091 4.091 17 C 0.484 3.516 18 O -0.552 6.552 19 O -0.511 6.511 20 C -0.145 4.145 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.107 4.107 24 C -0.131 4.131 25 C 0.073 3.927 26 H 0.254 0.746 27 H -0.016 1.016 28 H -0.012 1.012 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.427 0.573 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -24.605 6.571 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.940 3.060 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.656 4.656 8 H 0.069 0.931 9 C -0.025 4.025 10 C -0.124 4.124 11 C -0.053 4.053 12 N -0.221 5.221 13 C -0.073 4.073 14 C -0.077 4.077 15 H 0.098 0.902 16 C -0.128 4.128 17 C 0.328 3.672 18 O -0.443 6.443 19 O -0.325 6.325 20 C -0.147 4.147 21 C -0.105 4.105 22 C -0.148 4.148 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.023 4.023 26 H 0.063 0.937 27 H 0.002 0.998 28 H 0.007 0.993 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.289 0.711 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.162 0.838 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.695 -22.534 6.174 24.599 hybrid contribution -1.427 -1.671 -0.149 2.202 sum 6.268 -24.204 6.026 25.719 Atomic orbital electron populations 1.70919 1.07983 1.29738 1.48825 1.27541 0.96612 1.07017 0.92580 0.82925 0.74136 0.70811 0.78165 1.20725 1.19278 1.19193 1.22454 0.94675 0.93282 1.55147 0.93086 1.19116 0.94986 0.94591 0.93849 1.21367 0.97892 0.92101 1.00994 1.22122 0.92932 0.90130 1.00112 1.60188 1.26788 1.04765 1.30363 1.23336 0.98621 0.89147 0.96199 1.20977 0.97251 0.94463 0.95016 0.90156 1.21302 0.95623 0.91606 1.04310 1.23668 0.87575 0.80461 0.75500 1.90765 1.39767 1.64909 1.48838 1.84489 1.50952 1.22957 1.74101 1.20974 0.98208 0.99725 0.95831 1.20737 0.96215 1.00354 0.93199 1.21435 0.97120 0.95271 1.00951 1.21265 1.00202 0.98119 0.92977 1.20801 0.96585 1.00151 0.97505 1.19735 0.95902 0.97152 0.89487 0.93703 0.99759 0.99333 0.92970 0.92635 0.95772 0.90766 0.90290 0.88034 0.85426 0.84514 0.71090 0.82939 0.82503 0.83795 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.42 13.65 21.45 0.29 -60.13 16 2 C -0.04 -2.45 5.46 84.66 0.46 -1.99 16 3 Si 1.12 51.74 29.90 68.60 2.05 53.79 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.62 -37.11 9.11 25.60 0.23 -36.88 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.01 0.68 4.28 29.85 0.13 0.80 16 10 C -0.09 -3.89 5.02 30.59 0.15 -3.74 16 11 C 0.07 2.81 4.75 86.30 0.41 3.22 16 12 N -0.50 -16.61 5.06 -688.64 -3.48 -20.09 16 13 C 0.05 1.41 5.92 86.66 0.51 1.92 16 14 C -0.06 -1.29 2.56 -10.72 -0.03 -1.32 16 15 H 0.08 2.11 7.78 -2.39 -0.02 2.09 16 16 C -0.09 -1.27 5.22 29.85 0.16 -1.12 16 17 C 0.48 8.16 8.13 71.24 0.58 8.74 16 18 O -0.55 -13.94 16.12 21.95 0.35 -13.59 16 19 O -0.51 -5.71 13.42 -51.36 -0.69 -6.40 16 20 C -0.14 -3.55 5.67 -19.49 -0.11 -3.66 16 21 C -0.09 -1.66 9.77 22.21 0.22 -1.44 16 22 C -0.13 -2.44 10.06 22.30 0.22 -2.22 16 23 C -0.11 -2.52 10.02 22.21 0.22 -2.30 16 24 C -0.13 -3.96 8.54 22.47 0.19 -3.77 16 25 C 0.07 2.26 5.28 38.28 0.20 2.46 16 26 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 27 H -0.02 -0.94 8.01 -2.39 -0.02 -0.96 16 28 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 29 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 2.51 5.58 -2.39 -0.01 2.49 16 31 H 0.02 0.97 8.06 -2.39 -0.02 0.95 16 32 H 0.07 2.84 7.85 -2.39 -0.02 2.82 16 33 H 0.08 2.24 7.48 -2.39 -0.02 2.22 16 34 H 0.10 2.28 7.79 -2.39 -0.02 2.26 16 35 H 0.13 1.40 7.95 -2.39 -0.02 1.38 16 36 H 0.14 1.21 7.84 -2.39 -0.02 1.19 16 37 H 0.43 1.63 9.10 -74.05 -0.67 0.95 16 38 H 0.15 1.81 7.89 -2.91 -0.02 1.78 16 39 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.11 3.63 7.18 -2.91 -0.02 3.61 16 Total: -1.00 -77.94 338.99 2.54 -75.40 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.46 Total: 12.30 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.55 Total: -41.28 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -3.19 Total: -80.22 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.34 Total: -19.99 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.79 kcal Total: -77.94 2.54 -75.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148087091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.961 kcal (2) G-P(sol) polarization free energy of solvation -77.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds